Diff of the two buildlogs: -- --- b1/build.log 2024-04-29 07:46:25.771998069 +0000 +++ b2/build.log 2024-04-29 08:06:09.837545844 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 1 01:54:22 -12 2025 -I: pbuilder-time-stamp: 1748786062 +I: Current time: Mon Apr 29 21:46:30 +14 2024 +I: pbuilder-time-stamp: 1714376790 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -37,54 +37,86 @@ dpkg-source: info: applying ignore-m32-m64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/128066/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 29 07:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='d2e3d9808cb54d3c84ce44e9110c3853' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='128066' - PS1='# ' - PS2='> ' + INVOCATION_ID=8d172bb7e3ff46afa548b2130e309fba + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20936 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aFhCqAKx/pbuilderrc_JJZG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aFhCqAKx/b1 --logfile b1/build.log genometools_1.6.5+ds-2.2.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aFhCqAKx/pbuilderrc_WZC1 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aFhCqAKx/b2 --logfile b2/build.log genometools_1.6.5+ds-2.2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/128066/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 21 07:13 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -97,7 +129,7 @@ Depends: dpkg-dev (>= 1.22.5), debhelper (>= 13), debhelper-compat (= 13), dh-python, liblua5.1-0-dev, lua-md5-dev, lua-filesystem-dev, lua-lpeg-dev, libcairo2-dev, zlib1g-dev, libbz2-dev, libexpat1-dev, libsqlite3-dev, libbam-dev, libpango1.0-dev, libtre-dev, texlive-latex-base, texlive-latex-extra, texlive-fonts-extra, texlive-latex-recommended, texlive-fonts-recommended, python3-all, python3-setuptools, asciidoc-base, libxml2-utils, xsltproc, ruby, docbook-xsl, docbook-xml, faketime, imagemagick dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19709 files and directories currently installed.) +(Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -574,31 +606,32 @@ Get: 253 http://deb.debian.org/debian trixie/main i386 texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 254 http://deb.debian.org/debian trixie/main i386 texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 255 http://deb.debian.org/debian trixie/main i386 texlive-latex-extra all 2023.20240207-1 [19.7 MB] -Fetched 824 MB in 37s (22.0 MB/s) +Fetched 824 MB in 18s (45.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:i386: dependency problems, but removing anyway as you requested: libperl5.38:i386 depends on libdb5.3. libpam-modules:i386 depends on libdb5.3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19709 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Removing libdb5.3:i386 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libdb5.3t64:i386. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19702 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19878 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_i386.deb ... Unpacking libdb5.3t64:i386 (5.3.28+dfsg2-7) ... Setting up libdb5.3t64:i386 (5.3.28+dfsg2-7) ... dpkg: libssl3:i386: dependency problems, but removing anyway as you requested: + libkrb5-3:i386 depends on libssl3 (>= 3.0.0). coreutils depends on libssl3 (>= 3.0.0). -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19708 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19884 files and directories currently installed.) Removing libssl3:i386 (3.1.5-1) ... Selecting previously unselected package libssl3t64:i386. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19871 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_i386.deb ... Unpacking libssl3t64:i386 (3.2.1-3) ... Setting up libssl3t64:i386 (3.2.1-3) ... Selecting previously unselected package libfftw3-double3:i386. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19710 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19886 files and directories currently installed.) Preparing to unpack .../00-libfftw3-double3_3.3.10-1+b1_i386.deb ... Unpacking libfftw3-double3:i386 (3.3.10-1+b1) ... Selecting previously unselected package libexpat1:i386. @@ -731,7 +764,7 @@ Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20984 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21160 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_i386.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. @@ -764,7 +797,7 @@ Unpacking libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21976 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22152 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_i386.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:i386. @@ -1409,8 +1442,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Jun 1 13:57:31 UTC 2025. -Universal Time is now: Sun Jun 1 13:57:31 UTC 2025. +Local time is now: Mon Apr 29 07:50:48 UTC 2024. +Universal Time is now: Mon Apr 29 07:50:48 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up lua-filesystem:i386 (1.8.0-3+b1) ... @@ -1687,7 +1720,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/genometools-1.6.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../genometools_1.6.5+ds-2.2_source.changes +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/genometools-1.6.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../genometools_1.6.5+ds-2.2_source.changes dpkg-buildpackage: info: source package genometools dpkg-buildpackage: info: source version 1.6.5+ds-2.2 dpkg-buildpackage: info: source distribution unstable @@ -1771,15 +1808,12 @@ cp debian/doc-imgs/*png www/genometools.org/htdocs/images cp www/genometools.org/htdocs/docs.html debian/ faketime -f "`TZ=UTC date -d @1714182112 +'%Y-%m-%d %H:%M:%S'`" dh_auto_build -- verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals - make -j22 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals + make -j10 "INSTALL=install --strip-program=true" verbose=yes useshared=yes x32=no 64bit=no errorcheck=no all docs manuals make[2]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds' echo '[create obj/gt_config.h]' [create obj/gt_config.h] test -d obj || mkdir -p obj test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core (echo '#ifndef GT_CONFIG_H' ;\ echo '#define GT_CONFIG_H' ;\ echo '#define GT_CC "'`cc --version | head -n 1`\" ;\ @@ -1789,891 +1823,901 @@ -e 's/^/#define GT_CPPFLAGS "/'; \ echo '#define GT_VERSION "'`cat VERSION`\" ) > obj/gt_config.h cc -c src/core/alphabet.c -o obj/src/core/alphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/array.c -o obj/src/core/array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/array2dim.c -o obj/src/core/array2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cat VERSION | \ + sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cat VERSION | \ + sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h +cat VERSION | \ + sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h +test -d obj/src/core || mkdir -p obj/src/core +echo '#endif' >> obj/gt_config.h cc -c src/core/array3dim.c -o obj/src/core/array3dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/basename.c -o obj/src/core/basename.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bioseq.c -o obj/src/core/bioseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o +cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o +cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim_sparse.o +cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core -cat VERSION | \ - sed 's/\([0-9]*\)\.[0-9]*\.[0-9]*/#define GT_MAJOR_VERSION \1/' >> obj/gt_config.h cc -c src/core/bittab.c -o obj/src/core/bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core -cat VERSION | \ - sed 's/[0-9]*\.\([0-9]*\)\.[0-9]*/#define GT_MINOR_VERSION \1/' >> obj/gt_config.h +cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o +cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o cc -c src/core/bsearch.c -o obj/src/core/bsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cat VERSION | \ - sed 's/[0-9]*\.[0-9]*\.\([0-9]*\)/#define GT_MICRO_VERSION \1/' >> obj/gt_config.h test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/byte_select.c -o obj/src/core/byte_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -echo '#endif' >> obj/gt_config.h +cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o +cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o +cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o +cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_select.c -o obj/src/core/byte_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_select.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/byte_popcount.c -o obj/src/core/byte_popcount.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/byte_popcount.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array2dim.c -o obj/src/core/array2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o +cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o +cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bioseq_iterator.c -o obj/src/core/bioseq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_iterator.o -cc -c src/core/array2dim_sparse.c -o obj/src/core/array2dim_sparse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array2dim_sparse.o +cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o +cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/array3dim.c -o obj/src/core/array3dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array3dim.o +cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bool_matrix.c -o obj/src/core/bool_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bool_matrix.o -cc -c src/core/bitbuffer.c -o obj/src/core/bitbuffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitbuffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring.c -o obj/src/core/checkbitpackstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackarray.c -o obj/src/core/checkbitpackarray.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackarray.o +cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o +cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/colorspace.c -o obj/src/core/colorspace.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/basename.c -o obj/src/core/basename.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/basename.o -cc -c src/core/bioseq_col.c -o obj/src/core/bioseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq_col.o -cc -c src/core/bitpackstringop16.c -o obj/src/core/bitpackstringop16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop16.o -cc -c src/core/class_alloc.c -o obj/src/core/class_alloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc.o -cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_simple.o -cc -c src/core/class_alloc_lock.c -o obj/src/core/class_alloc_lock.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/class_alloc_lock.o -cc -c src/core/bioseq.c -o obj/src/core/bioseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bioseq.o +cc -c src/core/bsearch.c -o obj/src/core/bsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bsearch.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o +cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/codon_iterator_simple.c -o obj/src/core/codon_iterator_simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_simple.o +cc -c src/core/codon_iterator_encseq.c -o obj/src/core/codon_iterator_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator_encseq.o +cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/compat.c -o obj/src/core/compat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/complement.c -o obj/src/core/complement.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/countingsort.c -o obj/src/core/countingsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o +cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr.c -o obj/src/core/cstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop64.c -o obj/src/core/bitpackstringop64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop64.o +cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o +cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/codon_iterator.c -o obj/src/core/codon_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/codon_iterator.o -cc -c src/core/colorspace.c -o obj/src/core/colorspace.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/colorspace.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/countingsort.c -o obj/src/core/countingsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/countingsort.o -cc -c src/core/complement.c -o obj/src/core/complement.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/complement.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o +cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/combinatorics.c -o obj/src/core/combinatorics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/combinatorics.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o cc -c src/core/dlist.c -o obj/src/core/dlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o +cc -c src/core/checkbitpackstring32.c -o obj/src/core/checkbitpackstring32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring32.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/compat.c -o obj/src/core/compat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compat.o +cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o +cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o +cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/eansi.c -o obj/src/core/eansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o -cc -c src/core/cstr.c -o obj/src/core/cstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq.c -o obj/src/core/encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o -cc -c src/core/cstr_table.c -o obj/src/core/cstr_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_table.o -cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o +cc -c src/core/dynalloc.c -o obj/src/core/dynalloc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dynalloc.o +cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o +cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o +cc -c src/core/ebzlib.c -o obj/src/core/ebzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ebzlib.o cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o +test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o +cc -c src/core/dlist.c -o obj/src/core/dlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dlist.o cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring-int.c -o obj/src/core/checkbitpackstring-int.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring-int.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/csvline_reader.c -o obj/src/core/csvline_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/csvline_reader.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/desc_buffer.c -o obj/src/core/desc_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/desc_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/endianess.c -o obj/src/core/endianess.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o -cc -c src/core/bittab.c -o obj/src/core/bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bittab.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/error.c -o obj/src/core/error.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o -cc -c src/core/bitpackstringop32.c -o obj/src/core/bitpackstringop32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop32.o -cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example.c -o obj/src/core/example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/endianess.c -o obj/src/core/endianess.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/endianess.o +cc -c src/core/encseq_access_type.c -o obj/src/core/encseq_access_type.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_access_type.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_a.c -o obj/src/core/example_a.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/example_b.c -o obj/src/core/example_b.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/encseq_ptr.c -o obj/src/core/encseq_ptr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_ptr.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/ezlib.c -o obj/src/core/ezlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/example_a.c -o obj/src/core/example_a.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_a.o -cc -c src/core/example.c -o obj/src/core/example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example.o -cc -c src/core/checkbitpackstring16.c -o obj/src/core/checkbitpackstring16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring16.o +cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o +cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fa.c -o obj/src/core/fa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/error.c -o obj/src/core/error.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/error.o -cc -c src/core/cstr_array.c -o obj/src/core/cstr_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/cstr_array.o -cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_b.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/example_b.c -o obj/src/core/example_b.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/example_b.o cc -c src/core/fasta.c -o obj/src/core/fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o -cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/ezlib.c -o obj/src/core/ezlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ezlib.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o +cc -c src/core/encseq_metadata.c -o obj/src/core/encseq_metadata.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_metadata.o +cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/fastq.c -o obj/src/core/fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/file.c -o obj/src/core/file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta_reader.c -o obj/src/core/fasta_reader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader.o -cc -c src/core/eansi.c -o obj/src/core/eansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/eansi.o -cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o -cc -c src/core/checkbitpackstring64.c -o obj/src/core/checkbitpackstring64.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring64.o -cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o -cc -c src/core/encseq_options.c -o obj/src/core/encseq_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_options.o -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o -cc -c src/core/disc_distri.c -o obj/src/core/disc_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/disc_distri.o cc -c src/core/fasta.c -o obj/src/core/fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta.o -cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/fileutils.c -o obj/src/core/fileutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o +cc -c src/core/encseq_col.c -o obj/src/core/encseq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq_col.o cc -c src/core/gc_content.c -o obj/src/core/gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/fasta_reader_rec.c -o obj/src/core/fasta_reader_rec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_rec.o +cc -c src/core/fasta_reader_fsm.c -o obj/src/core/fasta_reader_fsm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_fsm.o +cc -c src/core/fasta_reader_seqit.c -o obj/src/core/fasta_reader_seqit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fasta_reader_seqit.o +cc -c src/core/fastq.c -o obj/src/core/fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fastq.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/grep.c -o obj/src/core/grep.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/hashmap.c -o obj/src/core/hashmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/hashtable.c -o obj/src/core/hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/compact_ulong_store.c -o obj/src/core/compact_ulong_store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/compact_ulong_store.o -cc -c src/core/dual-pivot-qsort.c -o obj/src/core/dual-pivot-qsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dual-pivot-qsort.o -cc -c src/core/gc_content.c -o obj/src/core/gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gc_content.o +cc -c src/core/init.c -o obj/src/core/init.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/gtdatapath.c -o obj/src/core/gtdatapath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/gtdatapath.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/io.c -o obj/src/core/io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o +cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fileutils.o +cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o +cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashmap.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/log.c -o obj/src/core/log.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/init.c -o obj/src/core/init.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/init.o cc -c src/core/logger.c -o obj/src/core/logger.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/alphabet.c -o obj/src/core/alphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/alphabet.o -cc -c src/core/dyn_bittab.c -o obj/src/core/dyn_bittab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/dyn_bittab.o -cc -c src/core/bitpackstringop.c -o obj/src/core/bitpackstringop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop.o -cc -c src/core/array.c -o obj/src/core/array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/array.o -cc -c src/core/file.c -o obj/src/core/file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/file.o cc -c src/core/ma.c -o obj/src/core/ma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/hashmap.c -o obj/src/core/hashmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashmap.o -cc -c src/core/fileutils.c -o obj/src/core/fileutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fileutils.o +cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o cc -c src/core/log.c -o obj/src/core/log.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/log.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mapspec.c -o obj/src/core/mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o -cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/bitpackstringop8.c -o obj/src/core/bitpackstringop8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/bitpackstringop8.o -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/io.c -o obj/src/core/io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/io.o +cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/logger.c -o obj/src/core/logger.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/logger.o +cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/grep.c -o obj/src/core/grep.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/grep.o cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/msort.c -o obj/src/core/msort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/md5_fingerprint.c -o obj/src/core/md5_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_fingerprint.o cc -c src/core/multithread.c -o obj/src/core/multithread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_seqid.c -o obj/src/core/md5_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_seqid.o +cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o +cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/fa.c -o obj/src/core/fa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/fa.o cc -c src/core/option.c -o obj/src/core/option.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/orf.c -o obj/src/core/orf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ma.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/multithread.c -o obj/src/core/multithread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/multithread.o cc -c src/core/output_file.c -o obj/src/core/output_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o +cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/orf.o +cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/md5_tab.c -o obj/src/core/md5_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_tab.o cc -c src/core/parseutils.c -o obj/src/core/parseutils.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/password_entry.c -o obj/src/core/password_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/checkbitpackstring8.c -o obj/src/core/checkbitpackstring8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/checkbitpackstring8.o -cc -c src/core/ma.c -o obj/src/core/ma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/ma.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/phase.c -o obj/src/core/phase.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/orf.c -o obj/src/core/orf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/orf.o -cc -c src/core/mathsupport.c -o obj/src/core/mathsupport.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mathsupport.o cc -c src/core/process.c -o obj/src/core/process.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/md5_encoder.c -o obj/src/core/md5_encoder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/md5_encoder.o -test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/hashtable.c -o obj/src/core/hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/hashtable.o -cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o cc -c src/core/output_file.c -o obj/src/core/output_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/output_file.o +cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o +cc -c src/core/process.c -o obj/src/core/process.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/process.o +test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/progressbar.c -o obj/src/core/progressbar.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/password_entry.c -o obj/src/core/password_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/password_entry.o -cc -c src/core/phase.c -o obj/src/core/phase.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/phase.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/quality.c -o obj/src/core/quality.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/queue.c -o obj/src/core/queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o +cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/range.c -o obj/src/core/range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/progressbar.c -o obj/src/core/progressbar.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/progressbar.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/readmode.c -o obj/src/core/readmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o +cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort-ulong.o cc -c src/core/safearith.c -o obj/src/core/safearith.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core -test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/score_function.c -o obj/src/core/score_function.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq.c -o obj/src/core/seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/seq_col.c -o obj/src/core/seq_col.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o +cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o +cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o +cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o +cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/readmode.c -o obj/src/core/readmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/readmode.o -cc -c src/core/seq_info_cache.c -o obj/src/core/seq_info_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_info_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq.c -o obj/src/core/seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq.o -cc -c src/core/score_function.c -o obj/src/core/score_function.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_function.o -cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o +cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/quality.c -o obj/src/core/quality.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/quality.o +cc -c src/core/seq_iterator.c -o obj/src/core/seq_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator.o +cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o +cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_col.c -o obj/src/core/seq_col.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_col.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator_sequence_buffer.c -o obj/src/core/seq_iterator_sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o +cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/showtime.c -o obj/src/core/showtime.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/score_matrix.c -o obj/src/core/score_matrix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/score_matrix.o -cc -c src/core/msort.c -o obj/src/core/msort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/msort.o +cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o +cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o +cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o +cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/sig.c -o obj/src/core/sig.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer.c -o obj/src/core/sequence_buffer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer.o -cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o -cc -c src/core/showtime.c -o obj/src/core/showtime.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/showtime.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o cc -c src/core/splitter.c -o obj/src/core/splitter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str.c -o obj/src/core/str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_fastq.c -o obj/src/core/sequence_buffer_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_array.c -o obj/src/core/str_array.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/parseutils.c -o obj/src/core/parseutils.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/parseutils.o -cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o +cc -c src/core/sig.c -o obj/src/core/sig.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sig.o +cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/str_cache.c -o obj/src/core/str_cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_dust.c -o obj/src/core/sequence_buffer_dust.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_dust.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strand.c -o obj/src/core/strand.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/strcmp.c -o obj/src/core/strcmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o -cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/string_distri.c -o obj/src/core/string_distri.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/str_cache.c -o obj/src/core/str_cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_cache.o +cc -c src/core/strand.c -o obj/src/core/strand.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strand.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/symbol.c -o obj/src/core/symbol.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/str_array.c -o obj/src/core/str_array.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str_array.o +cc -c src/core/strcmp.c -o obj/src/core/strcmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/strcmp.o cc -c src/core/thread.c -o obj/src/core/thread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/spacepeak.c -o obj/src/core/spacepeak.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/spacepeak.o -cc -c src/core/sequence_buffer_fasta.c -o obj/src/core/sequence_buffer_fasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_fasta.o -cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/timer.c -o obj/src/core/timer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/symbol.c -o obj/src/core/symbol.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/symbol.o +cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool.c -o obj/src/core/tool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/string_distri.c -o obj/src/core/string_distri.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/string_distri.o +cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/toolbox.c -o obj/src/core/toolbox.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/mapspec.c -o obj/src/core/mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/mapspec.o -cc -c src/core/thread.c -o obj/src/core/thread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/thread.o +cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tokenizer.o +cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o cc -c src/core/tool.c -o obj/src/core/tool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool_iterator.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/trans_table.c -o obj/src/core/trans_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/translator.c -o obj/src/core/translator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/seq_iterator_fastq.c -o obj/src/core/seq_iterator_fastq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/seq_iterator_fastq.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/tool_iterator.c -o obj/src/core/tool_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tool_iterator.o -cc -c src/core/tokenizer.c -o obj/src/core/tokenizer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tokenizer.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/version.c -o obj/src/core/version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o +cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o +cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/version.o +cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o +cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o test -d obj/src/core || mkdir -p obj/src/core +cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/timer.c -o obj/src/core/timer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/timer.o -cc -c src/core/tooldriver.c -o obj/src/core/tooldriver.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/tooldriver.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/warning.c -o obj/src/core/warning.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/unit_testing.c -o obj/src/core/unit_testing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/unit_testing.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/version.c -o obj/src/core/version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/version.o cc -c src/core/xansi.c -o obj/src/core/xansi.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/versionfunc.o -cc -c src/core/toolbox.c -o obj/src/core/toolbox.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/toolbox.o -test -d obj/src/core || mkdir -p obj/src/core test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbsd.c -o obj/src/core/xbsd.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o +cc -c src/core/versionfunc.c -o obj/src/core/versionfunc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/versionfunc.o +test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xposix.c -o obj/src/core/xposix.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/warning.c -o obj/src/core/warning.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/warning.o test -d obj/src/core || mkdir -p obj/src/core cc -c src/core/xzlib.c -o obj/src/core/xzlib.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o test -d obj/src/core || mkdir -p obj/src/core -cc -c src/core/sequence_buffer_embl.c -o obj/src/core/sequence_buffer_embl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_embl.o cc -c src/core/yarandom.c -o obj/src/core/yarandom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/safearith.c -o obj/src/core/safearith.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/safearith.o -cc -c src/core/sequence_buffer_plain.c -o obj/src/core/sequence_buffer_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_plain.o -cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbsd.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/core/xbsd.c -o obj/src/core/xbsd.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbsd.o +cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/core/xbzlib.c -o obj/src/core/xbzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xbzlib.o +cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/xansi.c -o obj/src/core/xansi.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xansi.o cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/xzlib.c -o obj/src/core/xzlib.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xzlib.o cc -c src/core/translator.c -o obj/src/core/translator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/translator.o -cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o cc -c src/core/yarandom.c -o obj/src/core/yarandom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/yarandom.o -cc -c src/core/interval_tree.c -o obj/src/core/interval_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/interval_tree.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/splitter.c -o obj/src/core/splitter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/splitter.o -cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/core/trans_table.c -o obj/src/core/trans_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/trans_table.o cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o +cc -c src/core/xposix.c -o obj/src/core/xposix.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/xposix.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/add_ids_stream.c -o obj/src/extended/add_ids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_stream.o +cc -c src/extended/add_introns_stream.c -o obj/src/extended/add_introns_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_introns_stream.o cc -c src/extended/alignment.c -o obj/src/extended/alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/sequence_buffer_gb.c -o obj/src/core/sequence_buffer_gb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/sequence_buffer_gb.o -cc -c src/core/qsort-ulong.c -o obj/src/core/qsort-ulong.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort-ulong.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/qsort_r.c -o obj/src/core/qsort_r.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/qsort_r.o +cc -c src/extended/add_ids_visitor.c -o obj/src/extended/add_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/add_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/queue.c -o obj/src/core/queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/queue.o -cc -c src/core/str.c -o obj/src/core/str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/str.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/core/option.c -o obj/src/core/option.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/option.o cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o +cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/array_in_stream.c -o obj/src/extended/array_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_in_stream.o -cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/core/range.c -o obj/src/core/range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/range.o -cc -c src/extended/anno_db_schema.c -o obj/src/extended/anno_db_schema.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_schema.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/array_out_stream.c -o obj/src/extended/array_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/array_out_stream.o -cc -c src/core/radix_sort.c -o obj/src/core/radix_sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/radix_sort.o +cc -c src/extended/aligned_segments_pile.c -o obj/src/extended/aligned_segments_pile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segments_pile.o +cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/bed_in_stream.c -o obj/src/extended/bed_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_in_stream.o +cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o +cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o +cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o +cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/aligned_segment.c -o obj/src/extended/aligned_segment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/aligned_segment.o -cc -c src/extended/bitinstream.c -o obj/src/extended/bitinstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitinstream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/buffer_stream.o cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/assembly_stats_calculator.c -o obj/src/extended/assembly_stats_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/assembly_stats_calculator.o -cc -c src/extended/bitoutstream.c -o obj/src/extended/bitoutstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bitoutstream.o +cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o cc -c src/extended/cds_check_stream.c -o obj/src/extended/cds_check_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/cds_stream.c -o obj/src/extended/cds_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_stream.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/chain.c -o obj/src/extended/chain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/buffer_stream.c -o obj/src/extended/buffer_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/buffer_stream.o cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/affinealign.c -o obj/src/extended/affinealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/affinealign.o -cc -c src/extended/blast_process_call.c -o obj/src/extended/blast_process_call.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/blast_process_call.o -cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o cc -c src/extended/chain.c -o obj/src/extended/chain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chain.o -cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/check_boundaries_visitor.o -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/bed_parser.c -o obj/src/extended/bed_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/bed_parser.o +cc -c src/extended/check_boundaries_visitor.c -o obj/src/extended/check_boundaries_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/check_boundaries_visitor.o cc -c src/extended/chseqids_stream.c -o obj/src/extended/chseqids_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/chseqids_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/cds_check_visitor.c -o obj/src/extended/cds_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_check_visitor.o +cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o +cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o +cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/alignment.c -o obj/src/extended/alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/alignment.o -cc -c src/extended/clustered_set_uf.c -o obj/src/extended/clustered_set_uf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set_uf.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/coin_hmm.c -o obj/src/extended/coin_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/coin_hmm.o +cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o +cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o +cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o +cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_variable_strands.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq_search_arguments.c -o obj/src/extended/condenseq_search_arguments.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_search_arguments.o +cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o +cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/dot_out_stream.c -o obj/src/extended/dot_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_out_stream.o +cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_stream.c -o obj/src/extended/csa_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_stream.o +cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o +cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/editscript.c -o obj/src/extended/editscript.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/comment_node.c -o obj/src/extended/comment_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/comment_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/clustered_set.c -o obj/src/extended/clustered_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/clustered_set.o -cc -c src/extended/anno_db_gfflike.c -o obj/src/extended/anno_db_gfflike.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/anno_db_gfflike.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/dice_hmm.c -o obj/src/extended/dice_hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dice_hmm.o cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/cds_visitor.c -o obj/src/extended/cds_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cds_visitor.o +cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/eof_node.c -o obj/src/extended/eof_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/eof_node.o -cc -c src/extended/dot_visitor.c -o obj/src/extended/dot_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dot_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/csa_gene.c -o obj/src/extended/csa_gene.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_gene.o -cc -c src/extended/csa_splice_form.c -o obj/src/extended/csa_splice_form.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_splice_form.o -cc -c src/extended/csa_variable_strands.c -o obj/src/extended/csa_variable_strands.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_variable_strands.o -cc -c src/extended/cstr_iterator.c -o obj/src/extended/cstr_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/cstr_iterator.o -cc -c src/extended/dup_feature_stream.c -o obj/src/extended/dup_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_stream.o -cc -c src/extended/collect_ids_visitor.c -o obj/src/extended/collect_ids_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/collect_ids_visitor.o -cc -c src/extended/dup_feature_visitor.c -o obj/src/extended/dup_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/dup_feature_visitor.o -cc -c src/extended/elias_gamma.c -o obj/src/extended/elias_gamma.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/elias_gamma.o -cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o -cc -c src/extended/csa_visitor.c -o obj/src/extended/csa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/csa_visitor.o +cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o +cc -c src/extended/evaluator.c -o obj/src/extended/evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/evaluator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/extract_feature_sequence.c -o obj/src/extended/extract_feature_sequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_sequence.o -cc -c src/extended/extract_feature_stream.c -o obj/src/extended/extract_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_stream.o +cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o +cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/fasta_header_iterator.c -o obj/src/extended/fasta_header_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/fasta_header_iterator.o cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/encdesc_header_io.c -o obj/src/extended/encdesc_header_io.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc_header_io.o +cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/consensus_sa.c -o obj/src/extended/consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/consensus_sa.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o +cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/condenseq.c -o obj/src/extended/condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq.o test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/extract_feature_visitor.c -o obj/src/extended/extract_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/extract_feature_visitor.o -cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_observer.o +cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o +cc -c src/extended/feature_node_observer.c -o obj/src/extended/feature_node_observer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_observer.o +cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o cc -c src/extended/feature_node_iterator.c -o obj/src/extended/feature_node_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node_iterator.o -cc -c src/extended/feature_in_stream.c -o obj/src/extended/feature_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_in_stream.o -cc -c src/extended/feature_info.c -o obj/src/extended/feature_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_info.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/feature_out_stream.c -o obj/src/extended/feature_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_out_stream.o cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/feature_index_memory.c -o obj/src/extended/feature_index_memory.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index_memory.o -cc -c src/extended/feature_stream.c -o obj/src/extended/feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_stream.o cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/diagonalbandalign.c -o obj/src/extended/diagonalbandalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign.o -cc -c src/extended/feature_index.c -o obj/src/extended/feature_index.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_index.o -cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o +cc -c src/extended/feature_visitor.c -o obj/src/extended/feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_visitor.o +cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o +cc -c src/extended/gap_str.c -o obj/src/extended/gap_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gap_str.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o +cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_out_stream.o +cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/gff3_in_stream.c -o obj/src/extended/gff3_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream.o -cc -c src/extended/gff3_escaping.c -o obj/src/extended/gff3_escaping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_escaping.o -cc -c src/extended/gff3_numsorted_out_stream.c -o obj/src/extended/gff3_numsorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_numsorted_out_stream.o -cc -c src/extended/condenseq_creator.c -o obj/src/extended/condenseq_creator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/condenseq_creator.o -cc -c src/extended/gff3_out_stream.c -o obj/src/extended/gff3_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_out_stream.o cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gff3_in_stream_plain.c -o obj/src/extended/gff3_in_stream_plain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_in_stream_plain.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/gff3_output.c -o obj/src/extended/gff3_output.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_output.o cc -c src/extended/golomb.c -o obj/src/extended/golomb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/diagonalbandalign_affinegapcost.c -o obj/src/extended/diagonalbandalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/diagonalbandalign_affinegapcost.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o -cc -c src/extended/gff3_linesorted_out_stream.c -o obj/src/extended/gff3_linesorted_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_linesorted_out_stream.o +cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o +cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o +cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/genome_node.c -o obj/src/extended/genome_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/genome_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/compressed_bitsequence.c -o obj/src/extended/compressed_bitsequence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/compressed_bitsequence.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/hcr.c -o obj/src/extended/hcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/gtf_out_stream.c -o obj/src/extended/gtf_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_out_stream.o -cc -c src/extended/gtdatahelp.c -o obj/src/extended/gtdatahelp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtdatahelp.o -cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/hmm.c -o obj/src/extended/hmm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o -cc -c src/extended/gtf_in_stream.c -o obj/src/extended/gtf_in_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_in_stream.o cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/globalchaining.c -o obj/src/extended/globalchaining.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/globalchaining.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_visitor.c -o obj/src/extended/gtf_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_visitor.o -cc -c src/extended/encdesc.c -o obj/src/extended/encdesc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/encdesc.o +cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/golomb.c -o obj/src/extended/golomb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/golomb.o -cc -c src/extended/feature_node.c -o obj/src/extended/feature_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/feature_node.o -cc -c src/extended/gff3_visitor.c -o obj/src/extended/gff3_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_visitor.o cc -c src/extended/id_to_md5_stream.c -o obj/src/extended/id_to_md5_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o cc -c src/extended/inter_feature_stream.c -o obj/src/extended/inter_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset.c -o obj/src/extended/intset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o +cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/inter_feature_visitor.c -o obj/src/extended/inter_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/inter_feature_visitor.o -cc -c src/extended/id_to_md5_visitor.c -o obj/src/extended/id_to_md5_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/id_to_md5_visitor.o cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/gtf_parser.c -o obj/src/extended/gtf_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gtf_parser.o -cc -c src/extended/intset.c -o obj/src/extended/intset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset.o -cc -c src/extended/intset_combined.c -o obj/src/extended/intset_combined.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_combined.o cc -c src/extended/io_function_pointers.c -o obj/src/extended/io_function_pointers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/io_function_pointers.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o +cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o +cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/load_stream.o +cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linspace_management.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/mapping.c -o obj/src/extended/mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/load_stream.c -o obj/src/extended/load_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/load_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match.c -o obj/src/extended/match.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/intset_32.c -o obj/src/extended/intset_32.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_32.o -cc -c src/extended/linspace_management.c -o obj/src/extended/linspace_management.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linspace_management.o -cc -c src/extended/hpol_processor.c -o obj/src/extended/hpol_processor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hpol_processor.o -cc -c src/extended/hmm.c -o obj/src/extended/hmm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hmm.o -cc -c src/extended/intset_8.c -o obj/src/extended/intset_8.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_8.o +cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o +cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/luahelper.c -o obj/src/extended/luahelper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luahelper.o +cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator.c -o obj/src/extended/match_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/intset_16.c -o obj/src/extended/intset_16.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/intset_16.o cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/editscript.c -o obj/src/extended/editscript.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/editscript.o -cc -c src/extended/hcr.c -o obj/src/extended/hcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/hcr.o -cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o -cc -c src/extended/mapping.c -o obj/src/extended/mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mapping.o -cc -c src/extended/match_blast.c -o obj/src/extended/match_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_blast.o +cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_last.c -o obj/src/extended/match_last.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/linearalign.c -o obj/src/extended/linearalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign.o +cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o cc -c src/extended/match_open.c -o obj/src/extended/match_open.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator_open.c -o obj/src/extended/match_iterator_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_open.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o cc -c src/extended/match_last.c -o obj/src/extended/match_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_last.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match.c -o obj/src/extended/match.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_iterator_blast.c -o obj/src/extended/match_iterator_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_blast.o +cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/luaserialize.c -o obj/src/extended/luaserialize.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/luaserialize.o cc -c src/extended/match_iterator_sw.c -o obj/src/extended/match_iterator_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_sw.o +cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o +cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o +cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o cc -c src/extended/match_open.c -o obj/src/extended/match_open.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_open.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/huffcode.c -o obj/src/extended/huffcode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/huffcode.o +cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/match_sw.c -o obj/src/extended/match_sw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_sw.o cc -c src/extended/match_visitor.c -o obj/src/extended/match_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_visitor.o -cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o -cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/md5set.c -o obj/src/extended/md5set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/md5_to_id_stream.c -o obj/src/extended/md5_to_id_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_stream.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/gff3_parser.c -o obj/src/extended/gff3_parser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/gff3_parser.o cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/match_iterator_last.c -o obj/src/extended/match_iterator_last.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/match_iterator_last.o +cc -c src/extended/maxcoordvalue.c -o obj/src/extended/maxcoordvalue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/maxcoordvalue.o +cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/merge_feature_stream.c -o obj/src/extended/merge_feature_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_stream.o -cc -c src/extended/linearalign_affinegapcost.c -o obj/src/extended/linearalign_affinegapcost.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/linearalign_affinegapcost.o -cc -c src/extended/kmer_database.c -o obj/src/extended/kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/kmer_database.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/md5_to_id_visitor.c -o obj/src/extended/md5_to_id_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5_to_id_visitor.o cc -c src/extended/mutate.c -o obj/src/extended/mutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/merge_feature_visitor.c -o obj/src/extended/merge_feature_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_feature_visitor.o cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/meta_node.c -o obj/src/extended/meta_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/meta_node.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/multi_sanitizer_visitor.c -o obj/src/extended/multi_sanitizer_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multi_sanitizer_visitor.o cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/merge_stream.c -o obj/src/extended/merge_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/merge_stream.o -cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o +cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o +cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/md5set.c -o obj/src/extended/md5set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/md5set.o -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/mutate.c -o obj/src/extended/mutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/mutate.o -cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/node_stream.c -o obj/src/extended/node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_stream.o +cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o cc -c src/extended/node_visitor.c -o obj/src/extended/node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/node_visitor.o cc -c src/extended/obo_stanza.c -o obj/src/extended/obo_stanza.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_stanza.o -cc -c src/extended/orf_finder_stream.c -o obj/src/extended/orf_finder_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_stream.o cc -c src/extended/orf_iterator.c -o obj/src/extended/orf_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_iterator.o -cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/permute_words.c -o obj/src/extended/permute_words.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/permute_words.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rcr.c -o obj/src/extended/rcr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/orphanage.c -o obj/src/extended/orphanage.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orphanage.o cc -c src/extended/rdb.c -o obj/src/extended/rdb.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o +cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o +cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o +cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o +cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o cc -c src/extended/rdb_visitor.c -o obj/src/extended/rdb_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/orf_finder_visitor.c -o obj/src/extended/orf_finder_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/orf_finder_visitor.o +cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended @@ -2684,987 +2728,982 @@ test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/priority_queue.c -o obj/src/extended/priority_queue.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/priority_queue.o cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/obo_parse_tree.c -o obj/src/extended/obo_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/obo_parse_tree.o -cc -c src/extended/rdb.c -o obj/src/extended/rdb.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb.o -cc -c src/extended/ranked_list.c -o obj/src/extended/ranked_list.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/ranked_list.o -cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/multieoplist.c -o obj/src/extended/multieoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/multieoplist.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/reverse.c -o obj/src/extended/reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o +cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o +cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o +cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o +cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o +cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/rmq.c -o obj/src/extended/rmq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/popcount_tab.c -o obj/src/extended/popcount_tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/popcount_tab.o -cc -c src/extended/region_node_builder.c -o obj/src/extended/region_node_builder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node_builder.o test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/regular_seqid.c -o obj/src/extended/regular_seqid.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regular_seqid.o -cc -c src/extended/rdb_sqlite.c -o obj/src/extended/rdb_sqlite.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rdb_sqlite.o -cc -c src/extended/region_node.c -o obj/src/extended/region_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_node.o -cc -c src/extended/regioncov_visitor.c -o obj/src/extended/regioncov_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/regioncov_visitor.o -cc -c src/extended/reverse.c -o obj/src/extended/reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reverse.o cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/reconstructalignment.c -o obj/src/extended/reconstructalignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/reconstructalignment.o cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sampling.c -o obj/src/extended/sampling.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_query_name_iterator.o +cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/safe_popen.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/safe_popen.c -o obj/src/extended/safe_popen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/safe_popen.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/sam_query_name_iterator.c -o obj/src/extended/sam_query_name_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_query_name_iterator.o cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o +cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rmq.o +cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o +cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/region_mapping.c -o obj/src/extended/region_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/region_mapping.o -cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_alignment.o cc -c src/extended/script_wrapper_stream.c -o obj/src/extended/script_wrapper_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_stream.o -cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o +cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sam_alignment.c -o obj/src/extended/sam_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sam_alignment.o +cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o +cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o +cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/samfile_encseq_mapping.c -o obj/src/extended/samfile_encseq_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_encseq_mapping.o -cc -c src/extended/script_wrapper_visitor.c -o obj/src/extended/script_wrapper_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_wrapper_visitor.o -cc -c src/extended/select_stream.c -o obj/src/extended/select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_stream.o -cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o +cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o -cc -c src/extended/rmq.c -o obj/src/extended/rmq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rmq.o -cc -c src/extended/samfile_iterator.c -o obj/src/extended/samfile_iterator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/samfile_iterator.o -cc -c src/extended/sampling.c -o obj/src/extended/sampling.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sampling.o -cc -c src/extended/scorehandler.c -o obj/src/extended/scorehandler.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/scorehandler.o -cc -c src/extended/script_filter.c -o obj/src/extended/script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/script_filter.o -cc -c src/extended/seqid2file.c -o obj/src/extended/seqid2file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2file.o -cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o -cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o -cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o -cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o -cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o +cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o cc -c src/extended/set_source_visitor.c -o obj/src/extended/set_source_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/set_source_visitor.o +cc -c src/extended/seqid2seqnum_mapping.c -o obj/src/extended/seqid2seqnum_mapping.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqid2seqnum_mapping.o test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sequence_node_out_stream.c -o obj/src/extended/sequence_node_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_stream.o +cc -c src/extended/seqpos_classifier.c -o obj/src/extended/seqpos_classifier.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/seqpos_classifier.o cc -c src/extended/shredder.c -o obj/src/extended/shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sequence_node.c -o obj/src/extended/sequence_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node.o cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sequence_node_out_visitor.c -o obj/src/extended/sequence_node_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_out_visitor.o cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/rbtree.c -o obj/src/extended/rbtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rbtree.o cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sequence_node_add_stream.c -o obj/src/extended/sequence_node_add_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sequence_node_add_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/select_visitor.c -o obj/src/extended/select_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/select_visitor.o cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o +cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o +cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/snp_annotator_stream.c -o obj/src/extended/snp_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_stream.o -cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o cc -c src/extended/sspliced_alignment_parsing.c -o obj/src/extended/sspliced_alignment_parsing.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment_parsing.o +cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o +cc -c src/extended/splicedseq.c -o obj/src/extended/splicedseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splicedseq.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o cc -c src/extended/swalign.c -o obj/src/extended/swalign.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o +cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/squarealign.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o +cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o +cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/sort_stream.c -o obj/src/extended/sort_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sort_stream.o -cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/shredder.c -o obj/src/extended/shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/shredder.o -test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/tidy_region_node_stream.c -o obj/src/extended/tidy_region_node_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_stream.o -cc -c src/extended/splice_site_info_stream.c -o obj/src/extended/splice_site_info_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_stream.o -cc -c src/extended/stat_stream.c -o obj/src/extended/stat_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/swalign.c -o obj/src/extended/swalign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/swalign.o -cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o -cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o -cc -c src/extended/spec_results.c -o obj/src/extended/spec_results.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_results.o +cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o -cc -c src/extended/squarealign.c -o obj/src/extended/squarealign.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/squarealign.o -cc -c src/extended/splice_site_info_visitor.c -o obj/src/extended/splice_site_info_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/splice_site_info_visitor.o -cc -c src/extended/sspliced_alignment.c -o obj/src/extended/sspliced_alignment.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/sspliced_alignment.o +cc -c src/extended/targetbest_select_stream.c -o obj/src/extended/targetbest_select_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/targetbest_select_stream.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/stat_visitor.c -o obj/src/extended/stat_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stat_visitor.o -cc -c src/extended/string_matching.c -o obj/src/extended/string_matching.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/string_matching.o +cc -c src/extended/tidy_region_node_visitor.c -o obj/src/extended/tidy_region_node_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tidy_region_node_visitor.o cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/transcript_bittabs.c -o obj/src/extended/transcript_bittabs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_bittabs.o test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/snp_annotator_visitor.c -o obj/src/extended/snp_annotator_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/snp_annotator_visitor.o cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/transcript_counts.c -o obj/src/extended/transcript_counts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_counts.o -cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/spec_visitor.c -o obj/src/extended/spec_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/spec_visitor.o -cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o +cc -c src/extended/transcript_evaluators.c -o obj/src/extended/transcript_evaluators.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_evaluators.o cc -c src/extended/transcript_used_exons.c -o obj/src/extended/transcript_used_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_used_exons.o -cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o -cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/type_node.c -o obj/src/extended/type_node.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/transcript_exons.c -o obj/src/extended/transcript_exons.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/transcript_exons.o cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/type_checker_builtin.c -o obj/src/extended/type_checker_builtin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_builtin.o +cc -c src/extended/type_checker.c -o obj/src/extended/type_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker.o test -d obj/src/extended || mkdir -p obj/src/extended -test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/union_find.c -o obj/src/extended/union_find.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/type_checker_obo.c -o obj/src/extended/type_checker_obo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_checker_obo.o +cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/typecheck_info.o +cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o -cc -c src/extended/rcr.c -o obj/src/extended/rcr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/rcr.o cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree.c -o obj/src/extended/wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o -cc -c src/extended/typecheck_info.c -o obj/src/extended/typecheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/typecheck_info.o -test -d obj/src/extended || mkdir -p obj/src/extended test -d obj/src/extended || mkdir -p obj/src/extended cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/tag_value_map.c -o obj/src/extended/tag_value_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tag_value_map.o +cc -c src/extended/type_graph.c -o obj/src/extended/type_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_graph.o +cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o +cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/extended || mkdir -p obj/src/extended -cc -c src/core/encseq.c -o obj/src/core/encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/core/encseq.o -cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/visitor_stream.c -o obj/src/extended/visitor_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/visitor_stream.o -cc -c src/extended/type_node.c -o obj/src/extended/type_node.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/type_node.o -cc -c src/extended/union_find.c -o obj/src/extended/union_find.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/union_find.o -cc -c src/extended/uniq_stream.c -o obj/src/extended/uniq_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uniq_stream.o cc -c src/extended/wtree.c -o obj/src/extended/wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree.o +cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/tir_stream.c -o obj/src/extended/tir_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/tir_stream.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o +cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/extended/xrf_abbr_entry.c -o obj/src/extended/xrf_abbr_entry.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_entry.o +test -d obj/src/extended || mkdir -p obj/src/extended +cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrfcheck_info.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua -test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o +cc -c src/extended/xrf_checker.c -o obj/src/extended/xrf_checker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_checker.o +test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/xrfcheck_info.c -o obj/src/extended/xrfcheck_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrfcheck_info.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/alphabet_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o +cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/uint64hashtable.c -o obj/src/extended/uint64hashtable.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/uint64hashtable.o -cc -c src/gtlua/annotationsketch_lua.c -o obj/src/gtlua/annotationsketch_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/annotationsketch_lua.o +cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o +cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o +cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/cds_stream_lua.c -o obj/src/gtlua/cds_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/cds_stream_lua.o -cc -c src/gtlua/csa_stream_lua.c -o obj/src/gtlua/csa_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/csa_stream_lua.o -cc -c src/gtlua/alphabet_lua.c -o obj/src/gtlua/alphabet_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/alphabet_lua.o -cc -c src/gtlua/bittab_lua.c -o obj/src/gtlua/bittab_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/bittab_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/extended/stream_evaluator.c -o obj/src/extended/stream_evaluator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/stream_evaluator.o cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/canvas_lua.c -o obj/src/gtlua/canvas_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/canvas_lua.o -test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/gtlua/diagram_lua.c -o obj/src/gtlua/diagram_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/diagram_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/feature_node_iterator_lua.c -o obj/src/gtlua/feature_node_iterator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_node_iterator_lua.o -cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/gtlua/feature_stream_lua.c -o obj/src/gtlua/feature_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_stream_lua.o -cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/extended/xrf_abbr_parse_tree.c -o obj/src/extended/xrf_abbr_parse_tree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/xrf_abbr_parse_tree.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o +cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtcore_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/gtlua || mkdir -p obj/src/gtlua +cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o +test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o test -d obj/src/gtlua || mkdir -p obj/src/gtlua -cc -c src/gtlua/feature_visitor_lua.c -o obj/src/gtlua/feature_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_visitor_lua.o -cc -c src/gtlua/feature_index_lua.c -o obj/src/gtlua/feature_index_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/feature_index_lua.o cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/extended/wtree_encseq.c -o obj/src/extended/wtree_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/extended/wtree_encseq.o -cc -c src/gtlua/gt_lua.c -o obj/src/gtlua/gt_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gt_lua.o -cc -c src/gtlua/gtcore_lua.c -o obj/src/gtlua/gtcore_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtcore_lua.o -cc -c src/gtlua/gtext_lua.c -o obj/src/gtlua/gtext_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/gtext_lua.o -test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/mathsupport_lua.c -o obj/src/gtlua/mathsupport_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/mathsupport_lua.o +test -d obj/src/gtlua || mkdir -p obj/src/gtlua cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o +cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/image_info_lua.c -o obj/src/gtlua/image_info_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/image_info_lua.o -test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match -cc -c src/gtlua/genome_stream_lua.c -o obj/src/gtlua/genome_stream_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_stream_lua.o -cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o +cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o +cc -c src/gtlua/stream_evaluator_lua.c -o obj/src/gtlua/stream_evaluator_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/stream_evaluator_lua.o +cc -c src/gtlua/score_matrix_lua.c -o obj/src/gtlua/score_matrix_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/score_matrix_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/bcktab.c -o obj/src/match/bcktab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/layout_lua.c -o obj/src/gtlua/layout_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/layout_lua.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/gtlua/genome_visitor_lua.c -o obj/src/gtlua/genome_visitor_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_visitor_lua.o cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o -cc -c src/gtlua/translate_lua.c -o obj/src/gtlua/translate_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/translate_lua.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/gtlua/region_mapping_lua.c -o obj/src/gtlua/region_mapping_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/region_mapping_lua.o cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/chainofin.c -o obj/src/match/chainofin.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o +cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o +cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/asqg_writer.c -o obj/src/match/asqg_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/asqg_writer.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/range_lua.c -o obj/src/gtlua/range_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/range_lua.o -cc -c src/match/apmeoveridx.c -o obj/src/match/apmeoveridx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/apmeoveridx.o -cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o -cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/chainofin.c -o obj/src/match/chainofin.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chainofin.o cc -c src/match/cutendpfx.c -o obj/src/match/cutendpfx.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cutendpfx.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o cc -c src/match/dist-short.c -o obj/src/match/dist-short.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/echoseq.c -o obj/src/match/echoseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/bare-encseq.c -o obj/src/match/bare-encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bare-encseq.o +cc -c src/match/cgr_spacedseed.c -o obj/src/match/cgr_spacedseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/cgr_spacedseed.o +cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o +cc -c src/gtlua/encseq_lua.c -o obj/src/gtlua/encseq_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/encseq_lua.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/echoseq.o cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtlua/genome_node_lua.c -o obj/src/gtlua/genome_node_lua.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtlua/genome_node_lua.o -cc -c src/match/dbs_spaced_seeds.c -o obj/src/match/dbs_spaced_seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dbs_spaced_seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dist-short.o +cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o +cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/echoseq.c -o obj/src/match/echoseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/echoseq.o -cc -c src/match/eis-blockcomp-param.c -o obj/src/match/eis-blockcomp-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp-param.o -cc -c src/match/dist-short.c -o obj/src/match/dist-short.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/dist-short.o -cc -c src/match/diagband-struct.c -o obj/src/match/diagband-struct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagband-struct.o -cc -c src/match/eis-bwtseq-context-param.c -o obj/src/match/eis-bwtseq-context-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context-param.o -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o +cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o +cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o +cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-param.c -o obj/src/match/eis-bwtseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-param.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-encidxseq-param.c -o obj/src/match/eis-encidxseq-param.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-param.o -cc -c src/match/eis-bwtseq-construct.c -o obj/src/match/eis-bwtseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-construct.o +cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-sass.c -o obj/src/match/eis-bwtseq-sass.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-sass.o +cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o +cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/eis-encidxseq-construct.c -o obj/src/match/eis-encidxseq-construct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq-construct.o cc -c src/match/eis-sa-common.c -o obj/src/match/eis-sa-common.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sa-common.o -cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-mrangealphabet.c -o obj/src/match/eis-mrangealphabet.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-mrangealphabet.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o +cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/bcktab.c -o obj/src/match/bcktab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/bcktab.o -cc -c src/match/eis-sequencemultiread.c -o obj/src/match/eis-sequencemultiread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-sequencemultiread.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-specialsrank.o cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq-context.c -o obj/src/match/eis-bwtseq-context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-context.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/eis-encidxseq.c -o obj/src/match/eis-encidxseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-encidxseq.o cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-specialsrank.c -o obj/src/match/eis-specialsrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-specialsrank.o -cc -c src/match/chain2dim.c -o obj/src/match/chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/chain2dim.o +cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o +cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o +cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-map.c -o obj/src/match/esa-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-seqblocktranslate.c -o obj/src/match/eis-seqblocktranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqblocktranslate.o -cc -c src/match/encseq2offset.c -o obj/src/match/encseq2offset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/encseq2offset.o -cc -c src/match/enum-patt.c -o obj/src/match/enum-patt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/enum-patt.o -cc -c src/match/eis-suffixarray-interface.c -o obj/src/match/eis-suffixarray-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixarray-interface.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-bwtseq.c -o obj/src/match/eis-bwtseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq.o +cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-suffixerator-interface.c -o obj/src/match/eis-suffixerator-interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-suffixerator-interface.o -cc -c src/match/eis-bwtseq-extinfo.c -o obj/src/match/eis-bwtseq-extinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-bwtseq-extinfo.o +cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o +cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o +cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o +cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-seqranges.c -o obj/src/match/eis-seqranges.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-seqranges.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o +cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-minunique.c -o obj/src/match/esa-minunique.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-minunique.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-bottomup.c -o obj/src/match/esa-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-bottomup.o -cc -c src/match/esa-map.c -o obj/src/match/esa-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-map.o -cc -c src/match/esa-dfs.c -o obj/src/match/esa-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-dfs.o cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-scanprj.c -o obj/src/match/esa-scanprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-scanprj.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-merge.c -o obj/src/match/esa-merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-merge.o cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa-lcpintervals.c -o obj/src/match/esa-lcpintervals.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-lcpintervals.o +cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o +cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o cc -c src/match/esa-seqread.c -o obj/src/match/esa-seqread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-seqread.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-splititv-simple.c -o obj/src/match/esa-splititv-simple.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv-simple.o +cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/esa_lcpintervals_visitor.c -o obj/src/match/esa_lcpintervals_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_lcpintervals_visitor.o -cc -c src/match/esa-spmitvs.c -o obj/src/match/esa-spmitvs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmitvs.o -cc -c src/match/esa-splititv.c -o obj/src/match/esa-splititv.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-splititv.o +cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o -cc -c src/match/esa-maxpairs.c -o obj/src/match/esa-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-maxpairs.o -cc -c src/match/esa-spmsk.c -o obj/src/match/esa-spmsk.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-spmsk.o cc -c src/match/esa_visitor.c -o obj/src/match/esa_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_visitor.o -cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-psbuf.o -cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o +cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-cache.c -o obj/src/match/firstcodes-cache.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-cache.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-psbuf.c -o obj/src/match/firstcodes-psbuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-psbuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o +cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-accum.c -o obj/src/match/firstcodes-accum.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-accum.o +cc -c src/match/eis-blockcomp.c -o obj/src/match/eis-blockcomp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-blockcomp.o +cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/eis-voiditf.c -o obj/src/match/eis-voiditf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/eis-voiditf.o +cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/esa-shulen.c -o obj/src/match/esa-shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-shulen.o -cc -c src/match/esa_spmitvs_visitor.c -o obj/src/match/esa_spmitvs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa_spmitvs_visitor.o cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o +cc -c src/match/firstcodes-scan.c -o obj/src/match/firstcodes-scan.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-scan.o +cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o +cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-spacelog.c -o obj/src/match/firstcodes-spacelog.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-spacelog.o +cc -c src/match/fmi-keyval.c -o obj/src/match/fmi-keyval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-keyval.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-fwduni.c -o obj/src/match/fmi-fwduni.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-fwduni.o -cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o -cc -c src/match/esa-mmsearch.c -o obj/src/match/esa-mmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/esa-mmsearch.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/fmi-mapspec.c -o obj/src/match/fmi-mapspec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mapspec.o cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/fmi-locate.c -o obj/src/match/fmi-locate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-locate.o +cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/fmi-map.c -o obj/src/match/fmi-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-map.o +cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/fmi-mkindex.c -o obj/src/match/fmi-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-mkindex.o cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes-insert.c -o obj/src/match/firstcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-insert.o -cc -c src/match/fmi-save.c -o obj/src/match/fmi-save.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-save.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/giextract.c -o obj/src/match/giextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o +cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/firstcodes-tab.c -o obj/src/match/firstcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes-tab.o cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/gfa_writer.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o +cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o +cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-polish.c -o obj/src/match/ft-polish.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-polish.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/hplstore.c -o obj/src/match/hplstore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-trimstat.c -o obj/src/match/ft-trimstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-trimstat.o +cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/gfa_writer.c -o obj/src/match/gfa_writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/gfa_writer.o cc -c src/match/hlk-version.c -o obj/src/match/hlk-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hlk-version.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/fmi-sufbwtstream.c -o obj/src/match/fmi-sufbwtstream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/fmi-sufbwtstream.o +cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o +cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/greedyfwdmat.c -o obj/src/match/greedyfwdmat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyfwdmat.o test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/hashfirstcodes.c -o obj/src/match/hashfirstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hashfirstcodes.o cc -c src/match/index_options.c -o obj/src/match/index_options.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/hplstore.c -o obj/src/match/hplstore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/hplstore.o +cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocali.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/iter-window.c -o obj/src/match/iter-window.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/greedyedist.c -o obj/src/match/greedyedist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/greedyedist.o -cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o +cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalidp.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/ft-front-generation.c -o obj/src/match/ft-front-generation.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-generation.o -cc -c src/match/idxlocali.c -o obj/src/match/idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocali.o +cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o cc -c src/match/initbasepower.c -o obj/src/match/initbasepower.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initbasepower.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/initeqsvec.c -o obj/src/match/initeqsvec.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/initeqsvec.o -cc -c src/match/idxlocalidp.c -o obj/src/match/idxlocalidp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalidp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/iter-window.c -o obj/src/match/iter-window.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/iter-window.o +cc -c src/match/kmer2string.c -o obj/src/match/kmer2string.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/kmer2string.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o +cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/idxlocalisw.c -o obj/src/match/idxlocalisw.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idxlocalisw.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/giextract.c -o obj/src/match/giextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/giextract.o -cc -c src/match/lua_tools.c -o obj/src/match/lua_tools.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/lua_tools.o +cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/myersapm.c -o obj/src/match/myersapm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/firstcodes.c -o obj/src/match/firstcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/firstcodes.o +cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/index_options.c -o obj/src/match/index_options.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/index_options.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/nullcols.c -o obj/src/match/nullcols.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/marksubstring.c -o obj/src/match/marksubstring.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/marksubstring.o cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o +cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o +cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/nullcols.c -o obj/src/match/nullcols.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/nullcols.o +cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o +cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pck-count-nodes.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/pssm.c -o obj/src/match/pssm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/mssufpat.c -o obj/src/match/mssufpat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/mssufpat.o -cc -c src/match/myersapm.c -o obj/src/match/myersapm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/myersapm.o -cc -c src/match/optionargmode.c -o obj/src/match/optionargmode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/optionargmode.o -cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o cc -c src/match/prsqualint.c -o obj/src/match/prsqualint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/prsqualint.o -cc -c src/match/merger-trie.c -o obj/src/match/merger-trie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/merger-trie.o cc -c src/match/querymatch.c -o obj/src/match/querymatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-eoplist.c -o obj/src/match/ft-eoplist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-eoplist.o -cc -c src/match/pck-count-nodes.c -o obj/src/match/pck-count-nodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pck-count-nodes.o +cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o +cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/pckdfs.c -o obj/src/match/pckdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckdfs.o -cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/pssm.c -o obj/src/match/pssm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pssm.o cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match -test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/idx-limdfs.c -o obj/src/match/idx-limdfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/idx-limdfs.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o +cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/pckbucket.c -o obj/src/match/pckbucket.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/pckbucket.o +cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/karlin_altschul_stat.c -o obj/src/match/karlin_altschul_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/karlin_altschul_stat.o -cc -c src/match/querymatch-align.c -o obj/src/match/querymatch-align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-align.o +cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o +cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o +cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/randomcodes-find-seldom.c -o obj/src/match/randomcodes-find-seldom.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-find-seldom.o cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-correct.c -o obj/src/match/randomcodes-correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-correct.o +cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-tab.o +cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o +cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o +cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/randomcodes-tab.c -o obj/src/match/randomcodes-tab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-tab.o +cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o +cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contigpaths.c -o obj/src/match/rdj-contigpaths.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigpaths.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/randomcodes-sfx-partssuf.c -o obj/src/match/randomcodes-sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-sfx-partssuf.o cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o +cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o +cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-cntlist.c -o obj/src/match/rdj-cntlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-cntlist.o -cc -c src/match/rdj-contigs-writer.c -o obj/src/match/rdj-contigs-writer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-writer.o +cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/querymatch.c -o obj/src/match/querymatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch.o -cc -c src/match/randomcodes-insert.c -o obj/src/match/randomcodes-insert.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-insert.o +cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/diagbandseed.c -o obj/src/match/diagbandseed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/diagbandseed.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-spmproc.c -o obj/src/match/rdj-spmproc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmproc.o +cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-version.c -o obj/src/match/rdj-version.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-version.o +cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/revcompl.c -o obj/src/match/revcompl.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/reads_libraries_table.c -o obj/src/match/reads_libraries_table.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads_libraries_table.o -cc -c src/match/querymatch-display.c -o obj/src/match/querymatch-display.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/querymatch-display.o -cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o -cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/rdj-twobitenc-editor.c -o obj/src/match/rdj-twobitenc-editor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-twobitenc-editor.o cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rectangle-store.c -o obj/src/match/rectangle-store.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rectangle-store.o +cc -c src/match/revcompl.c -o obj/src/match/revcompl.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/revcompl.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o +cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/radixsort_str.c -o obj/src/match/radixsort_str.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/radixsort_str.o -cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqnumrelpos.o -cc -c src/match/rdj-ovlfind-bf.c -o obj/src/match/rdj-ovlfind-bf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-bf.o +cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-dp.c -o obj/src/match/rdj-ovlfind-dp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-dp.o +cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-errfind.c -o obj/src/match/rdj-errfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-errfind.o -cc -c src/match/randomcodes-hpcorrect.c -o obj/src/match/randomcodes-hpcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes-hpcorrect.o -cc -c src/match/rdj-ovlfind-gusfield.c -o obj/src/match/rdj-ovlfind-gusfield.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-gusfield.o -cc -c src/match/seqabstract.c -o obj/src/match/seqabstract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqabstract.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/seqnumrelpos.c -o obj/src/match/seqnumrelpos.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seqnumrelpos.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-contfind-bottomup.c -o obj/src/match/rdj-contfind-bottomup.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfind-bottomup.o +cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o +cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed_extend_parts.c -o obj/src/match/seed_extend_parts.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed_extend_parts.o +cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-enumcodes.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed-extend-iter.c -o obj/src/match/seed-extend-iter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend-iter.o -cc -c src/match/sfx-apfxlen.c -o obj/src/match/sfx-apfxlen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-apfxlen.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o +cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/ft-front-prune.c -o obj/src/match/ft-front-prune.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/ft-front-prune.o -cc -c src/match/sfx-enumcodes.c -o obj/src/match/sfx-enumcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-enumcodes.o +cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o +cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-ovlfind-kmp.c -o obj/src/match/rdj-ovlfind-kmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-ovlfind-kmp.o -cc -c src/match/rdj-pairwise.c -o obj/src/match/rdj-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-pairwise.o -cc -c src/match/sfx-copysort.c -o obj/src/match/sfx-copysort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-copysort.o test -d obj/src/match || mkdir -p obj/src/match -cc -c src/match/sfx-lwcheck.c -o obj/src/match/sfx-lwcheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lwcheck.o -cc -c src/match/randomcodes.c -o obj/src/match/randomcodes.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/randomcodes.o -cc -c src/match/rdj-spmfind.c -o obj/src/match/rdj-spmfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmfind.o cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-lcpvalues.c -o obj/src/match/sfx-lcpvalues.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-lcpvalues.o -cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o -cc -c src/match/rdj-contigs-graph.c -o obj/src/match/rdj-contigs-graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contigs-graph.o cc -c src/match/sfx-outprj.c -o obj/src/match/sfx-outprj.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-outprj.o +cc -c src/match/sfx-opt.c -o obj/src/match/sfx-opt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-opt.o +cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/seed-extend.c -o obj/src/match/seed-extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/seed-extend.o -cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o +cc -c src/match/sfx-maprange.c -o obj/src/match/sfx-maprange.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-maprange.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-radixsort.c -o obj/src/match/sfx-radixsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-radixsort.o -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o +cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o +cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o +cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o +test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-mappedstr.c -o obj/src/match/sfx-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/specialrank.c -o obj/src/match/specialrank.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-linlcp.c -o obj/src/match/sfx-linlcp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-linlcp.o -cc -c src/match/sfx-run.c -o obj/src/match/sfx-run.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-run.o +cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o +cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o +cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o +cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/spaced-seeds.c -o obj/src/match/spaced-seeds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spaced-seeds.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/squarededist.c -o obj/src/match/squarededist.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-spmlist.c -o obj/src/match/rdj-spmlist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-spmlist.o -cc -c src/match/shu_unitfile.c -o obj/src/match/shu_unitfile.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu_unitfile.o -cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/substriter.c -o obj/src/match/substriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tagerator.c -o obj/src/match/tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-encseq-gc.c -o obj/src/match/shu-encseq-gc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-encseq-gc.o +cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o cc -c src/match/squarededist.c -o obj/src/match/squarededist.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/squarededist.o -cc -c src/match/sfx-bltrie.c -o obj/src/match/sfx-bltrie.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bltrie.o +cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o +cc -c src/match/spmsuftab.c -o obj/src/match/spmsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/spmsuftab.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-bentsedg.c -o obj/src/match/sfx-bentsedg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-bentsedg.o -cc -c src/match/sfx-partssuf.c -o obj/src/match/sfx-partssuf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-partssuf.o -cc -c src/match/sfx-suftaborder.c -o obj/src/match/sfx-suftaborder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suftaborder.o -cc -c src/match/shu-divergence.c -o obj/src/match/shu-divergence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-divergence.o -cc -c src/match/specialrank.c -o obj/src/match/specialrank.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/specialrank.o -cc -c src/match/substriter.c -o obj/src/match/substriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/substriter.o -cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o +cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suffixgetset.c -o obj/src/match/sfx-suffixgetset.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixgetset.o -cc -c src/match/shu-genomediff.c -o obj/src/match/shu-genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-genomediff.o test -d obj/src/match || mkdir -p obj/src/match test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/shu-dfs.c -o obj/src/match/shu-dfs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/shu-dfs.o -cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o +cc -c src/match/test-mappedstr.c -o obj/src/match/test-mappedstr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mappedstr.o +cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/test-mtrieins.c -o obj/src/match/test-mtrieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mtrieins.o -cc -c src/match/sfx-shortreadsort.c -o obj/src/match/sfx-shortreadsort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-shortreadsort.o +cc -c src/match/test-maxpairs.c -o obj/src/match/test-maxpairs.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-maxpairs.o cc -c src/match/test-mergeesa.c -o obj/src/match/test-mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-mergeesa.o -cc -c src/match/test-pairwise.c -o obj/src/match/test-pairwise.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/test-pairwise.o -cc -c src/match/turnwheels.c -o obj/src/match/turnwheels.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/turnwheels.o test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o test -d obj/src/match || mkdir -p obj/src/match +cc -c src/match/tagerator.c -o obj/src/match/tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tagerator.o cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/match || mkdir -p obj/src/match cc -c src/match/xdrop.c -o obj/src/match/xdrop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o +cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o +cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o +cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/twobits2kmers.c -o obj/src/match/twobits2kmers.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/twobits2kmers.o +cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/match/tyr-map.c -o obj/src/match/tyr-map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-map.o cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tyr-occratio.c -o obj/src/match/tyr-occratio.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-occratio.o -cc -c src/match/rdj-contfinder.c -o obj/src/match/rdj-contfinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-contfinder.o -cc -c src/match/tyr-search.c -o obj/src/match/tyr-search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-search.o +cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o +cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/tyr-mersplit.c -o obj/src/match/tyr-mersplit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mersplit.o -cc -c src/ltr/gt_ltrclustering.c -o obj/src/ltr/gt_ltrclustering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrclustering.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o +cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o +cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_four_char_motif.c -o obj/src/ltr/ltr_four_char_motif.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_four_char_motif.o +cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o +cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrdigest.c -o obj/src/ltr/gt_ltrdigest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrdigest.o -cc -c src/ltr/ltr_cluster_prepare_seq_visitor.c -o obj/src/ltr/ltr_cluster_prepare_seq_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_prepare_seq_visitor.o -cc -c src/ltr/ltr_orf_annotator_stream.c -o obj/src/ltr/ltr_orf_annotator_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_orf_annotator_stream.o -cc -c src/ltr/ltr_input_check_visitor.c -o obj/src/ltr/ltr_input_check_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_input_check_visitor.o -cc -c src/match/tyr-mkindex.c -o obj/src/match/tyr-mkindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/tyr-mkindex.o -test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/gt_ltrharvest.c -o obj/src/ltr/gt_ltrharvest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/gt_ltrharvest.o -cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o +cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o test -d obj/src/ltr || mkdir -p obj/src/ltr +cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o +cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o +test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltr_cluster_stream.c -o obj/src/ltr/ltr_cluster_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_cluster_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr -cc -c src/match/sfx-diffcov.c -o obj/src/match/sfx-diffcov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-diffcov.o cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_fasta_out_stream.c -o obj/src/ltr/ltrharvest_fasta_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_stream.o -cc -c src/ltr/ltr_classify_stream.c -o obj/src/ltr/ltr_classify_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_classify_stream.o cc -c src/ltr/ltrdigest_strand_assign_visitor.c -o obj/src/ltr/ltrdigest_strand_assign_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_strand_assign_visitor.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o +cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o test -d obj/src/ltr || mkdir -p obj/src/ltr cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o -test -d obj/src/mgth || mkdir -p obj/src/mgth test -d obj/src/mgth || mkdir -p obj/src/mgth -cc -c src/ltr/ltr_refseq_match_stream.c -o obj/src/ltr/ltr_refseq_match_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltr_refseq_match_stream.o -cc -c src/match/xdrop.c -o obj/src/match/xdrop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/xdrop.o -cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_pbs_visitor.c -o obj/src/ltr/ltrdigest_pbs_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pbs_visitor.o +test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/ltr/ltrharvest_tabout_stream.c -o obj/src/ltr/ltrharvest_tabout_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_stream.o +cc -c src/ltr/ltrharvest_fasta_out_visitor.c -o obj/src/ltr/ltrharvest_fasta_out_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_fasta_out_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth +cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_codon.o cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_codon.c -o obj/src/mgth/mg_codon.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_codon.o cc -c src/ltr/ltrdigest_ppt_visitor.c -o obj/src/ltr/ltrdigest_ppt_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_ppt_visitor.o +cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o test -d obj/src/mgth || mkdir -p obj/src/mgth -cc -c src/ltr/ltrdigest_file_out_stream.c -o obj/src/ltr/ltrdigest_file_out_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_file_out_stream.o cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/pdom_model_set.c -o obj/src/ltr/pdom_model_set.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/pdom_model_set.o cc -c src/ltr/ltrharvest_tabout_visitor.c -o obj/src/ltr/ltrharvest_tabout_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_tabout_visitor.o test -d obj/src/mgth || mkdir -p obj/src/mgth -cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/mgth || mkdir -p obj/src/mgth +cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o +cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_combinedscore.o +cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_computepath.c -o obj/src/mgth/mg_computepath.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_computepath.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/match/reads2twobit.c -o obj/src/match/reads2twobit.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/reads2twobit.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-suffixer.c -o obj/src/match/sfx-suffixer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-suffixer.o -cc -c src/mgth/metagenomethreader.c -o obj/src/mgth/metagenomethreader.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/metagenomethreader.o +cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o +cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o +cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/mgth/mg_reverse.c -o obj/src/mgth/mg_reverse.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_reverse.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o +cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o +cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o +cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o +cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_combinedscore.c -o obj/src/mgth/mg_combinedscore.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_combinedscore.o -cc -c src/annotationsketch/color.c -o obj/src/annotationsketch/color.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/color.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/canvas.c -o obj/src/annotationsketch/canvas.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas.o -cc -c src/annotationsketch/canvas_cairo_context.c -o obj/src/annotationsketch/canvas_cairo_context.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_context.o -cc -c src/annotationsketch/canvas_cairo_file.c -o obj/src/annotationsketch/canvas_cairo_file.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo_file.o -cc -c src/annotationsketch/coords.c -o obj/src/annotationsketch/coords.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/coords.o -cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/mgth/mg_compute_gene_prediction.c -o obj/src/mgth/mg_compute_gene_prediction.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_compute_gene_prediction.o -cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/mgth/mg_xmlparser.c -o obj/src/mgth/mg_xmlparser.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_xmlparser.o -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/custom_track.c -o obj/src/annotationsketch/custom_track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track.o +cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/drawing_range.o cc -c src/annotationsketch/custom_track_script_wrapper.c -o obj/src/annotationsketch/custom_track_script_wrapper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_script_wrapper.o -cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/ltr/ltrharvest_stream.c -o obj/src/ltr/ltrharvest_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrharvest_stream.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/custom_track_example.c -o obj/src/annotationsketch/custom_track_example.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_example.o +cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/drawing_range.c -o obj/src/annotationsketch/drawing_range.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/drawing_range.o -cc -c src/annotationsketch/block.c -o obj/src/annotationsketch/block.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/block.o -cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/mgth/mg_outputwriter.c -o obj/src/mgth/mg_outputwriter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/mgth/mg_outputwriter.o @@ -3672,393 +3711,392 @@ cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/ltr/ltrdigest_pdom_visitor.c -o obj/src/ltr/ltrdigest_pdom_visitor.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/ltr/ltrdigest_pdom_visitor.o +cc -c src/annotationsketch/custom_track_gc_content.c -o obj/src/annotationsketch/custom_track_gc_content.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/custom_track_gc_content.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/sfx-sain.c -o obj/src/match/sfx-sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/sfx-sain.o +cc -c src/annotationsketch/element.c -o obj/src/annotationsketch/element.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/element.o +cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch +cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o +cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch.o +cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o +test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/canvas_cairo.c -o obj/src/annotationsketch/canvas_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/canvas_cairo.o cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/image_info.c -o obj/src/annotationsketch/image_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/image_info.o +cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/line_breaker.c -o obj/src/annotationsketch/line_breaker.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker.o -cc -c src/annotationsketch/line_breaker_bases.c -o obj/src/annotationsketch/line_breaker_bases.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_bases.o +cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o +cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/gt_sketch.c -o obj/src/annotationsketch/gt_sketch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch.o -cc -c src/annotationsketch/gt_sketch_page.c -o obj/src/annotationsketch/gt_sketch_page.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/gt_sketch_page.o +cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o +cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o cc -c src/annotationsketch/line_breaker_captions.c -o obj/src/annotationsketch/line_breaker_captions.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line_breaker_captions.o -cc -c src/annotationsketch/luastyle.c -o obj/src/annotationsketch/luastyle.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/luastyle.o cc -c src/annotationsketch/rec_map.c -o obj/src/annotationsketch/rec_map.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/rec_map.o test -d obj/src/annotationsketch || mkdir -p obj/src/annotationsketch -cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o -cc -c src/annotationsketch/layout.c -o obj/src/annotationsketch/layout.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/layout.o -cc -c src/annotationsketch/line.c -o obj/src/annotationsketch/line.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/line.o echo '[gathering public API symbols to obj/public_symbols.lst]' [gathering public API symbols to obj/public_symbols.lst] +cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 printf "VERSION {\n\tglobal:\n" > obj/public_symbols.lst -test -d obj/src || mkdir -p obj/src -test -d obj/src || mkdir -p obj/src cat src/core/alphabet_api.h src/core/array2dim_api.h src/core/array2dim_sparse_api.h src/core/array3dim_api.h src/core/array_api.h src/core/arraydef_api.h src/core/assert_api.h src/core/basename_api.h src/core/bioseq_api.h src/core/bittab_api.h src/core/bool_matrix_api.h src/core/bsearch_api.h src/core/byte_popcount_api.h src/core/byte_select_api.h src/core/chardef_api.h src/core/class_alloc_api.h src/core/codon_api.h src/core/codon_iterator_api.h src/core/codon_iterator_encseq_api.h src/core/codon_iterator_simple_api.h src/core/compat_api.h src/core/countingsort_api.h src/core/cstr_api.h src/core/cstr_array_api.h src/core/cstr_table_api.h src/core/deprecated_api.h src/core/disc_distri_api.h src/core/divmodmul_api.h src/core/dlist_api.h src/core/encseq_api.h src/core/endianess_api.h src/core/ensure_api.h src/core/error_api.h src/core/fa_api.h src/core/fasta_api.h src/core/fasta_reader_api.h src/core/file_api.h src/core/fileutils_api.h src/core/fptr_api.h src/core/grep_api.h src/core/hashmap_api.h src/core/init_api.h src/core/interval_tree_api.h src/core/log_api.h src/core/logger_api.h src/core/ma_api.h src/core/mathsupport_api.h src/core/md5_encoder_api.h src/core/md5_fingerprint_api.h src/core/md5_seqid_api.h src/core/md5_tab_api.h src/core/minmax_api.h src/core/msort_api.h src/core/multithread_api.h src/core/option_api.h src/core/orf_api.h src/core/output_file_api.h src/core/parseutils_api.h src/core/phase_api.h src/core/qsort_r_api.h src/core/queue_api.h src/core/range_api.h src/core/readmode_api.h src/core/safearith_api.h src/core/score_matrix_api.h src/core/seq_api.h src/core/seq_iterator_api.h src/core/seq_iterator_fastq_api.h src/core/seq_iterator_sequence_buffer_api.h src/core/splitter_api.h src/core/str_api.h src/core/str_array_api.h src/core/str_cache_api.h src/core/strand_api.h src/core/strcmp_api.h src/core/symbol_api.h src/core/thread_api.h src/core/timer_api.h src/core/tool_api.h src/core/toolbox_api.h src/core/tooldriver_api.h src/core/trans_table_api.h src/core/translator_api.h src/core/types_api.h src/core/undef_api.h src/core/unit_testing_api.h src/core/unused_api.h src/core/version_api.h src/core/versionfunc_api.h src/core/warning_api.h src/core/xansi_api.h src/core/xposix_api.h src/core/yarandom_api.h src/extended/add_introns_stream_api.h src/extended/anno_db_gfflike_api.h src/extended/anno_db_schema_api.h src/extended/array_in_stream_api.h src/extended/array_out_stream_api.h src/extended/bed_in_stream_api.h src/extended/buffer_stream_api.h src/extended/cds_stream_api.h src/extended/cds_visitor_api.h src/extended/chain_api.h src/extended/check_boundaries_visitor_api.h src/extended/comment_node_api.h src/extended/consensus_sa_api.h src/extended/csa_stream_api.h src/extended/dup_feature_stream_api.h src/extended/eof_node_api.h src/extended/extract_feature_stream_api.h src/extended/feature_in_stream_api.h src/extended/feature_index_api.h src/extended/feature_index_memory_api.h src/extended/feature_node_api.h src/extended/feature_node_iterator_api.h src/extended/feature_out_stream_api.h src/extended/feature_stream_api.h src/extended/feature_type_api.h src/extended/genome_node_api.h src/extended/gff3_escaping_api.h src/extended/gff3_in_stream_api.h src/extended/gff3_out_stream_api.h src/extended/gff3_parser_api.h src/extended/gff3_visitor_api.h src/extended/globalchaining_api.h src/extended/gtf_in_stream_api.h src/extended/gtf_out_stream_api.h src/extended/id_to_md5_stream_api.h src/extended/inter_feature_stream_api.h src/extended/match_api.h src/extended/match_blast_api.h src/extended/match_iterator_api.h src/extended/match_last_api.h src/extended/match_open_api.h src/extended/match_sw_api.h src/extended/match_visitor_api.h src/extended/md5_to_id_stream_api.h src/extended/merge_feature_stream_api.h src/extended/merge_stream_api.h src/extended/meta_node_api.h src/extended/node_stream_api.h src/extended/node_visitor_api.h src/extended/orf_iterator_api.h src/extended/rbtree_api.h src/extended/rdb_api.h src/extended/rdb_mysql_api.h src/extended/rdb_sqlite_api.h src/extended/rdb_visitor_api.h src/extended/region_mapping_api.h src/extended/region_node_api.h src/extended/regular_seqid_api.h src/extended/reverse_api.h src/extended/script_filter_api.h src/extended/script_wrapper_stream_api.h src/extended/script_wrapper_visitor_api.h src/extended/select_stream_api.h src/extended/seqid2file_api.h src/extended/sequence_node_api.h src/extended/set_source_visitor_api.h src/extended/sort_stream_api.h src/extended/splice_site_info_stream_api.h src/extended/stat_stream_api.h src/extended/tag_value_map_api.h src/extended/type_checker_api.h src/extended/type_checker_builtin_api.h src/extended/type_checker_obo_api.h src/extended/uniq_stream_api.h src/extended/visitor_stream_api.h src/extended/xrf_checker_api.h src/ltr/ltr_classify_stream_api.h src/ltr/ltr_cluster_stream_api.h src/ltr/ltr_orf_annotator_stream_api.h src/ltr/ltr_refseq_match_stream_api.h src/annotationsketch/block_api.h src/annotationsketch/canvas_api.h src/annotationsketch/canvas_cairo_context_api.h src/annotationsketch/canvas_cairo_file_api.h src/annotationsketch/color_api.h src/annotationsketch/custom_track_api.h src/annotationsketch/custom_track_gc_content_api.h src/annotationsketch/custom_track_script_wrapper_api.h src/annotationsketch/diagram_api.h src/annotationsketch/feature_index_api.h src/annotationsketch/feature_index_memory_api.h src/annotationsketch/feature_stream_api.h src/annotationsketch/graphics_api.h src/annotationsketch/graphics_cairo_api.h src/annotationsketch/image_info_api.h src/annotationsketch/layout_api.h src/annotationsketch/rec_map_api.h src/annotationsketch/style_api.h src/annotationsketch/text_width_calculator_api.h src/annotationsketch/text_width_calculator_cairo_api.h | tr ' ' '\n' \ | grep -E '^(gt_[0-9a-zA-Z_]+)(\[|\()' \ | cut -d'[' -f1 | cut -d'(' -f1 | sort | uniq > obj/public_symbols.lst.src +cc -c src/annotationsketch/text_width_calculator.c -o obj/src/annotationsketch/text_width_calculator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator.o +cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_dust.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/dbs_spaced_seeds.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \ + | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \ + | cut -d'(' -f1 >> obj/public_symbols.lst.src +test -d obj/src || mkdir -p obj/src cc -c src/gt.c -o obj/src/gt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src || mkdir -p obj/src cc -c src/gtr.c -o obj/src/gtr.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src || mkdir -p obj/src cc -c src/gtt.c -o obj/src/gtt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src || mkdir -p obj/src cc -c src/interactive.c -o obj/src/interactive.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cat src/core/alphabet.c src/core/array.c src/core/array2dim.c src/core/array2dim_sparse.c src/core/array3dim.c src/core/basename.c src/core/bioseq.c src/core/bioseq_col.c src/core/bioseq_iterator.c src/core/bitbuffer.c src/core/bitpackstringop.c src/core/bitpackstringop16.c src/core/bitpackstringop32.c src/core/bitpackstringop64.c src/core/bitpackstringop8.c src/core/bittab.c src/core/bool_matrix.c src/core/bsearch.c src/core/byte_popcount.c src/core/byte_select.c src/core/checkbitpackarray.c src/core/checkbitpackstring-int.c src/core/checkbitpackstring.c src/core/checkbitpackstring16.c src/core/checkbitpackstring32.c src/core/checkbitpackstring64.c src/core/checkbitpackstring8.c src/core/class_alloc.c src/core/class_alloc_lock.c src/core/codon_iterator.c src/core/codon_iterator_encseq.c src/core/codon_iterator_simple.c src/core/colorspace.c src/core/combinatorics.c src/core/compact_ulong_store.c src/core/compat.c src/core/complement.c src/core/countingsort.c src/core/cstr.c src/core/cstr_array.c src/core/cstr_table.c src/core/csvline_reader.c src/core/desc_buffer.c src/core/disc_distri.c src/core/dlist.c src/core/dual-pivot-qsort.c src/core/dyn_bittab.c src/core/dynalloc.c src/core/eansi.c src/core/ebzlib.c src/core/encseq.c src/core/encseq_access_type.c src/core/encseq_col.c src/core/encseq_metadata.c src/core/encseq_options.c src/core/encseq_ptr.c src/core/endianess.c src/core/error.c src/core/example.c src/core/example_a.c src/core/example_b.c src/core/ezlib.c src/core/fa.c src/core/fasta.c src/core/fasta_reader.c src/core/fasta_reader_fsm.c src/core/fasta_reader_rec.c src/core/fasta_reader_seqit.c src/core/fastq.c src/core/file.c src/core/fileutils.c src/core/gc_content.c src/core/grep.c src/core/gtdatapath.c src/core/hashmap.c src/core/hashtable.c src/core/init.c src/core/interval_tree.c src/core/io.c src/core/log.c src/core/logger.c src/core/ma.c src/core/mapspec.c src/core/mathsupport.c src/core/md5_encoder.c src/core/md5_fingerprint.c src/core/md5_seqid.c src/core/md5_tab.c src/core/msort.c src/core/multithread.c src/core/option.c src/core/orf.c src/core/output_file.c src/core/parseutils.c src/core/password_entry.c src/core/phase.c src/core/process.c src/core/progressbar.c src/core/qsort-ulong.c src/core/qsort_r.c src/core/quality.c src/core/queue.c src/core/radix_sort.c src/core/range.c src/core/readmode.c src/core/safearith.c src/core/score_function.c src/core/score_matrix.c src/core/seq.c src/core/seq_col.c src/core/seq_info_cache.c src/core/seq_iterator.c src/core/seq_iterator_fastq.c src/core/seq_iterator_sequence_buffer.c src/core/sequence_buffer.c src/core/sequence_buffer_dust.c src/core/sequence_buffer_embl.c src/core/sequence_buffer_fasta.c src/core/sequence_buffer_fastq.c src/core/sequence_buffer_gb.c src/core/sequence_buffer_plain.c src/core/showtime.c src/core/sig.c src/core/spacepeak.c src/core/splitter.c src/core/str.c src/core/str_array.c src/core/str_cache.c src/core/strand.c src/core/strcmp.c src/core/string_distri.c src/core/symbol.c src/core/thread.c src/core/timer.c src/core/tokenizer.c src/core/tool.c src/core/tool_iterator.c src/core/toolbox.c src/core/tooldriver.c src/core/trans_table.c src/core/translator.c src/core/unit_testing.c src/core/version.c src/core/versionfunc.c src/core/warning.c src/core/xansi.c src/core/xbsd.c src/core/xbzlib.c src/core/xposix.c src/core/xzlib.c src/core/yarandom.c src/extended/add_ids_stream.c src/extended/add_ids_visitor.c src/extended/add_introns_stream.c src/extended/affinealign.c src/extended/aligned_segment.c src/extended/aligned_segments_pile.c src/extended/alignment.c src/extended/anno_db_gfflike.c src/extended/anno_db_schema.c src/extended/array_in_stream.c src/extended/array_out_stream.c src/extended/assembly_stats_calculator.c src/extended/bed_in_stream.c src/extended/bed_parser.c src/extended/bitinstream.c src/extended/bitoutstream.c src/extended/blast_process_call.c src/extended/buffer_stream.c src/extended/cds_check_stream.c src/extended/cds_check_visitor.c src/extended/cds_stream.c src/extended/cds_visitor.c src/extended/chain.c src/extended/check_boundaries_visitor.c src/extended/chseqids_stream.c src/extended/clustered_set.c src/extended/clustered_set_uf.c src/extended/coin_hmm.c src/extended/collect_ids_visitor.c src/extended/comment_node.c src/extended/compressed_bitsequence.c src/extended/condenseq.c src/extended/condenseq_creator.c src/extended/condenseq_search_arguments.c src/extended/consensus_sa.c src/extended/csa_gene.c src/extended/csa_splice_form.c src/extended/csa_stream.c src/extended/csa_variable_strands.c src/extended/csa_visitor.c src/extended/cstr_iterator.c src/extended/diagonalbandalign.c src/extended/diagonalbandalign_affinegapcost.c src/extended/dice_hmm.c src/extended/dot_out_stream.c src/extended/dot_visitor.c src/extended/dup_feature_stream.c src/extended/dup_feature_visitor.c src/extended/editscript.c src/extended/elias_gamma.c src/extended/encdesc.c src/extended/encdesc_header_io.c src/extended/eof_node.c src/extended/evaluator.c src/extended/extract_feature_sequence.c src/extended/extract_feature_stream.c src/extended/extract_feature_visitor.c src/extended/fasta_header_iterator.c src/extended/feature_in_stream.c src/extended/feature_index.c src/extended/feature_index_memory.c src/extended/feature_info.c src/extended/feature_node.c src/extended/feature_node_iterator.c src/extended/feature_node_observer.c src/extended/feature_out_stream.c src/extended/feature_stream.c src/extended/feature_visitor.c src/extended/gap_str.c src/extended/genome_node.c src/extended/gff3_escaping.c src/extended/gff3_in_stream.c src/extended/gff3_in_stream_plain.c src/extended/gff3_linesorted_out_stream.c src/extended/gff3_numsorted_out_stream.c src/extended/gff3_out_stream.c src/extended/gff3_output.c src/extended/gff3_parser.c src/extended/gff3_visitor.c src/extended/globalchaining.c src/extended/golomb.c src/extended/gtdatahelp.c src/extended/gtf_in_stream.c src/extended/gtf_out_stream.c src/extended/gtf_parser.c src/extended/gtf_visitor.c src/extended/hcr.c src/extended/hmm.c src/extended/hpol_processor.c src/extended/huffcode.c src/extended/id_to_md5_stream.c src/extended/id_to_md5_visitor.c src/extended/inter_feature_stream.c src/extended/inter_feature_visitor.c src/extended/intset.c src/extended/intset_16.c src/extended/intset_32.c src/extended/intset_8.c src/extended/intset_combined.c src/extended/io_function_pointers.c src/extended/kmer_database.c src/extended/linearalign.c src/extended/linearalign_affinegapcost.c src/extended/linspace_management.c src/extended/load_stream.c src/extended/luahelper.c src/extended/luaserialize.c src/extended/mapping.c src/extended/match.c src/extended/match_blast.c src/extended/match_iterator.c src/extended/match_iterator_blast.c src/extended/match_iterator_last.c src/extended/match_iterator_open.c src/extended/match_iterator_sw.c src/extended/match_last.c src/extended/match_open.c src/extended/match_sw.c src/extended/match_visitor.c src/extended/maxcoordvalue.c src/extended/md5_to_id_stream.c src/extended/md5_to_id_visitor.c src/extended/md5set.c src/extended/merge_feature_stream.c src/extended/merge_feature_visitor.c src/extended/merge_stream.c src/extended/meta_node.c src/extended/multi_sanitizer_visitor.c src/extended/multieoplist.c src/extended/mutate.c src/extended/node_stream.c src/extended/node_visitor.c src/extended/obo_parse_tree.c src/extended/obo_stanza.c src/extended/orf_finder_stream.c src/extended/orf_finder_visitor.c src/extended/orf_iterator.c src/extended/orphanage.c src/extended/permute_words.c src/extended/popcount_tab.c src/extended/priority_queue.c src/extended/ranked_list.c src/extended/rbtree.c src/extended/rcr.c src/extended/rdb.c src/extended/rdb_sqlite.c src/extended/rdb_visitor.c src/extended/reconstructalignment.c src/extended/region_mapping.c src/extended/region_node.c src/extended/region_node_builder.c src/extended/regioncov_visitor.c src/extended/regular_seqid.c src/extended/reverse.c src/extended/rmq.c src/extended/safe_popen.c src/extended/sam_alignment.c src/extended/sam_query_name_iterator.c src/extended/samfile_encseq_mapping.c src/extended/samfile_iterator.c src/extended/sampling.c src/extended/scorehandler.c src/extended/script_filter.c src/extended/script_wrapper_stream.c src/extended/script_wrapper_visitor.c src/extended/select_stream.c src/extended/select_visitor.c src/extended/seqid2file.c src/extended/seqid2seqnum_mapping.c src/extended/seqpos_classifier.c src/extended/sequence_node.c src/extended/sequence_node_add_stream.c src/extended/sequence_node_out_stream.c src/extended/sequence_node_out_visitor.c src/extended/set_source_visitor.c src/extended/shredder.c src/extended/snp_annotator_stream.c src/extended/snp_annotator_visitor.c src/extended/sort_stream.c src/extended/spec_results.c src/extended/spec_visitor.c src/extended/splice_site_info_stream.c src/extended/splice_site_info_visitor.c src/extended/splicedseq.c src/extended/squarealign.c src/extended/sspliced_alignment.c src/extended/sspliced_alignment_parsing.c src/extended/stat_stream.c src/extended/stat_visitor.c src/extended/stream_evaluator.c src/extended/string_matching.c src/extended/swalign.c src/extended/tag_value_map.c src/extended/targetbest_select_stream.c src/extended/tidy_region_node_stream.c src/extended/tidy_region_node_visitor.c src/extended/tir_stream.c src/extended/transcript_bittabs.c src/extended/transcript_counts.c src/extended/transcript_evaluators.c src/extended/transcript_exons.c src/extended/transcript_used_exons.c src/extended/type_checker.c src/extended/type_checker_builtin.c src/extended/type_checker_obo.c src/extended/type_graph.c src/extended/type_node.c src/extended/typecheck_info.c src/extended/uint64hashtable.c src/extended/union_find.c src/extended/uniq_stream.c src/extended/visitor_stream.c src/extended/wtree.c src/extended/wtree_encseq.c src/extended/xrf_abbr_entry.c src/extended/xrf_abbr_parse_tree.c src/extended/xrf_checker.c src/extended/xrfcheck_info.c src/gtlua/alphabet_lua.c src/gtlua/annotationsketch_lua.c src/gtlua/bittab_lua.c src/gtlua/canvas_lua.c src/gtlua/cds_stream_lua.c src/gtlua/csa_stream_lua.c src/gtlua/diagram_lua.c src/gtlua/encseq_lua.c src/gtlua/feature_index_lua.c src/gtlua/feature_node_iterator_lua.c src/gtlua/feature_stream_lua.c src/gtlua/feature_visitor_lua.c src/gtlua/genome_node_lua.c src/gtlua/genome_stream_lua.c src/gtlua/genome_visitor_lua.c src/gtlua/gt_lua.c src/gtlua/gtcore_lua.c src/gtlua/gtext_lua.c src/gtlua/image_info_lua.c src/gtlua/layout_lua.c src/gtlua/mathsupport_lua.c src/gtlua/range_lua.c src/gtlua/region_mapping_lua.c src/gtlua/score_matrix_lua.c src/gtlua/stream_evaluator_lua.c src/gtlua/translate_lua.c src/match/apmeoveridx.c src/match/asqg_writer.c src/match/bare-encseq.c src/match/bcktab.c src/match/cgr_spacedseed.c src/match/chain2dim.c src/match/chainofin.c src/match/cutendpfx.c src/match/dbs_spaced_seeds.c src/match/diagband-struct.c src/match/diagbandseed.c src/match/dist-short.c src/match/echoseq.c src/match/eis-blockcomp-param.c src/match/eis-blockcomp.c src/match/eis-bwtseq-construct.c src/match/eis-bwtseq-context-param.c src/match/eis-bwtseq-context.c src/match/eis-bwtseq-extinfo.c src/match/eis-bwtseq-param.c src/match/eis-bwtseq-sass.c src/match/eis-bwtseq.c src/match/eis-encidxseq-construct.c src/match/eis-encidxseq-param.c src/match/eis-encidxseq.c src/match/eis-mrangealphabet.c src/match/eis-sa-common.c src/match/eis-seqblocktranslate.c src/match/eis-seqranges.c src/match/eis-sequencemultiread.c src/match/eis-specialsrank.c src/match/eis-suffixarray-interface.c src/match/eis-suffixerator-interface.c src/match/eis-voiditf.c src/match/encseq2offset.c src/match/enum-patt.c src/match/esa-bottomup.c src/match/esa-dfs.c src/match/esa-lcpintervals.c src/match/esa-map.c src/match/esa-maxpairs.c src/match/esa-merge.c src/match/esa-minunique.c src/match/esa-mmsearch.c src/match/esa-scanprj.c src/match/esa-seqread.c src/match/esa-shulen.c src/match/esa-splititv-simple.c src/match/esa-splititv.c src/match/esa-spmitvs.c src/match/esa-spmsk.c src/match/esa_lcpintervals_visitor.c src/match/esa_spmitvs_visitor.c src/match/esa_visitor.c src/match/firstcodes-accum.c src/match/firstcodes-cache.c src/match/firstcodes-insert.c src/match/firstcodes-psbuf.c src/match/firstcodes-scan.c src/match/firstcodes-spacelog.c src/match/firstcodes-tab.c src/match/firstcodes.c src/match/fmi-fwduni.c src/match/fmi-keyval.c src/match/fmi-locate.c src/match/fmi-map.c src/match/fmi-mapspec.c src/match/fmi-mkindex.c src/match/fmi-save.c src/match/fmi-sufbwtstream.c src/match/ft-eoplist.c src/match/ft-front-generation.c src/match/ft-front-prune.c src/match/ft-polish.c src/match/ft-trimstat.c src/match/gfa_writer.c src/match/giextract.c src/match/greedyedist.c src/match/greedyfwdmat.c src/match/hashfirstcodes.c src/match/hlk-version.c src/match/hplstore.c src/match/idx-limdfs.c src/match/idxlocali.c src/match/idxlocalidp.c src/match/idxlocalisw.c src/match/index_options.c src/match/initbasepower.c src/match/initeqsvec.c src/match/iter-window.c src/match/karlin_altschul_stat.c src/match/kmer2string.c src/match/lua_tools.c src/match/marksubstring.c src/match/merger-trie.c src/match/mssufpat.c src/match/myersapm.c src/match/nullcols.c src/match/optionargmode.c src/match/pck-count-nodes.c src/match/pckbucket.c src/match/pckdfs.c src/match/prsqualint.c src/match/pssm.c src/match/querymatch-align.c src/match/querymatch-display.c src/match/querymatch.c src/match/radixsort_str.c src/match/randomcodes-correct.c src/match/randomcodes-find-seldom.c src/match/randomcodes-hpcorrect.c src/match/randomcodes-insert.c src/match/randomcodes-sfx-partssuf.c src/match/randomcodes-tab.c src/match/randomcodes.c src/match/rdj-cntlist.c src/match/rdj-contfind-bottomup.c src/match/rdj-contfinder.c src/match/rdj-contigpaths.c src/match/rdj-contigs-graph.c src/match/rdj-contigs-writer.c src/match/rdj-errfind.c src/match/rdj-ovlfind-bf.c src/match/rdj-ovlfind-dp.c src/match/rdj-ovlfind-gusfield.c src/match/rdj-ovlfind-kmp.c src/match/rdj-pairwise.c src/match/rdj-spmfind.c src/match/rdj-spmlist.c src/match/rdj-spmproc.c src/match/rdj-strgraph.c src/match/rdj-twobitenc-editor.c src/match/rdj-version.c src/match/reads2twobit.c src/match/reads_libraries_table.c src/match/rectangle-store.c src/match/revcompl.c src/match/seed-extend-iter.c src/match/seed-extend.c src/match/seed_extend_parts.c src/match/seqabstract.c src/match/seqnumrelpos.c src/match/sfx-apfxlen.c src/match/sfx-bentsedg.c src/match/sfx-bltrie.c src/match/sfx-copysort.c src/match/sfx-diffcov.c src/match/sfx-enumcodes.c src/match/sfx-lcpvalues.c src/match/sfx-linlcp.c src/match/sfx-lwcheck.c src/match/sfx-mappedstr.c src/match/sfx-maprange.c src/match/sfx-opt.c src/match/sfx-outprj.c src/match/sfx-partssuf.c src/match/sfx-radixsort.c src/match/sfx-run.c src/match/sfx-sain.c src/match/sfx-shortreadsort.c src/match/sfx-suffixer.c src/match/sfx-suffixgetset.c src/match/sfx-suftaborder.c src/match/shu-dfs.c src/match/shu-divergence.c src/match/shu-encseq-gc.c src/match/shu-genomediff.c src/match/shu_unitfile.c src/match/spaced-seeds.c src/match/specialrank.c src/match/spmsuftab.c src/match/squarededist.c src/match/substriter.c src/match/tagerator.c src/match/test-mappedstr.c src/match/test-maxpairs.c src/match/test-mergeesa.c src/match/test-mtrieins.c src/match/test-pairwise.c src/match/turnwheels.c src/match/twobits2kmers.c src/match/tyr-map.c src/match/tyr-mersplit.c src/match/tyr-mkindex.c src/match/tyr-occratio.c src/match/tyr-search.c src/match/xdrop.c src/ltr/gt_ltrclustering.c src/ltr/gt_ltrdigest.c src/ltr/gt_ltrharvest.c src/ltr/ltr_classify_stream.c src/ltr/ltr_cluster_prepare_seq_visitor.c src/ltr/ltr_cluster_stream.c src/ltr/ltr_four_char_motif.c src/ltr/ltr_input_check_visitor.c src/ltr/ltr_orf_annotator_stream.c src/ltr/ltr_refseq_match_stream.c src/ltr/ltrdigest_file_out_stream.c src/ltr/ltrdigest_pbs_visitor.c src/ltr/ltrdigest_pdom_visitor.c src/ltr/ltrdigest_ppt_visitor.c src/ltr/ltrdigest_strand_assign_visitor.c src/ltr/ltrharvest_fasta_out_stream.c src/ltr/ltrharvest_fasta_out_visitor.c src/ltr/ltrharvest_stream.c src/ltr/ltrharvest_tabout_stream.c src/ltr/ltrharvest_tabout_visitor.c src/ltr/pdom_model_set.c src/mgth/metagenomethreader.c src/mgth/mg_codon.c src/mgth/mg_combinedscore.c src/mgth/mg_compute_gene_prediction.c src/mgth/mg_computepath.c src/mgth/mg_outputwriter.c src/mgth/mg_reverse.c src/mgth/mg_xmlparser.c src/annotationsketch/block.c src/annotationsketch/canvas.c src/annotationsketch/canvas_cairo.c src/annotationsketch/canvas_cairo_context.c src/annotationsketch/canvas_cairo_file.c src/annotationsketch/color.c src/annotationsketch/coords.c src/annotationsketch/custom_track.c src/annotationsketch/custom_track_example.c src/annotationsketch/custom_track_gc_content.c src/annotationsketch/custom_track_script_wrapper.c src/annotationsketch/diagram.c src/annotationsketch/drawing_range.c src/annotationsketch/element.c src/annotationsketch/graphics.c src/annotationsketch/graphics_cairo.c src/annotationsketch/gt_sketch.c src/annotationsketch/gt_sketch_page.c src/annotationsketch/image_info.c src/annotationsketch/layout.c src/annotationsketch/line.c src/annotationsketch/line_breaker.c src/annotationsketch/line_breaker_bases.c src/annotationsketch/line_breaker_captions.c src/annotationsketch/luastyle.c src/annotationsketch/rec_map.c src/annotationsketch/style.c src/annotationsketch/text_width_calculator.c src/annotationsketch/text_width_calculator_cairo.c src/annotationsketch/track.c | tr ' ' '\n' \ - | grep -E '(gt_[0-9a-zA-Z_]+_p)(\[|\()' \ - | cut -d'(' -f1 >> obj/public_symbols.lst.src -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/annotationsketch/graphics.c -o obj/src/annotationsketch/graphics.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics.o +cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o +for L in `cat obj/public_symbols.lst.src`; do \ + printf "\t\t$L;\n" >> obj/public_symbols.lst; \ +done; +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/gt.c -o obj/src/gt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gt.o cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o +printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst +printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst +printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/annotationsketch/diagram.c -o obj/src/annotationsketch/diagram.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/diagram.o cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o cc -c src/tools/gt_bed_to_gff3.c -o obj/src/tools/gt_bed_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_bed_to_gff3.o -cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/interactive.c -o obj/src/interactive.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/interactive.o -cc -c src/annotationsketch/text_width_calculator_cairo.c -o obj/src/annotationsketch/text_width_calculator_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/text_width_calculator_cairo.o +cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_cds.c -o obj/src/tools/gt_cds.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_cds.o +cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o +test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_chseqids.c -o obj/src/tools/gt_chseqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chseqids.o -cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_chain2dim.c -o obj/src/tools/gt_chain2dim.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_chain2dim.o -cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o +cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_clean.c -o obj/src/tools/gt_clean.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_clean.o cc -c src/tools/gt_compreads.c -o obj/src/tools/gt_compreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads.o -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/annotationsketch/track.c -o obj/src/annotationsketch/track.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/track.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtr.c -o obj/src/gtr.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtr.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/gtt.c -o obj/src/gtt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/gtt.o -for L in `cat obj/public_symbols.lst.src`; do \ - printf "\t\t$L;\n" >> obj/public_symbols.lst; \ -done; test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o +cc -c src/tools/gt_compreads_compress.c -o obj/src/tools/gt_compreads_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_compress.o +cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -printf "\t\tgt_array_add_ptr;\n" >> obj/public_symbols.lst +cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o cc -c src/tools/gt_compreads_refdecompress.c -o obj/src/tools/gt_compreads_refdecompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refdecompress.o -cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o -printf "\t\tgt_str_get_mem;\n" >> obj/public_symbols.lst -printf '\tlocal: *;\n\t};\n' >> obj/public_symbols.lst -cc -c src/annotationsketch/style.c -o obj/src/annotationsketch/style.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/style.o -cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o -cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_compreads_refcompress.c -o obj/src/tools/gt_compreads_refcompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_refcompress.o +cc -c src/tools/gt_compressedbits.c -o obj/src/tools/gt_compressedbits.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compressedbits.o +cc -c src/tools/gt_condenseq.c -o obj/src/tools/gt_condenseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq.o +cc -c src/tools/gt_compreads_decompress.c -o obj/src/tools/gt_compreads_decompress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_compreads_decompress.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/annotationsketch/graphics_cairo.c -o obj/src/annotationsketch/graphics_cairo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/annotationsketch/graphics_cairo.o cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o +cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o cc -c src/tools/gt_condenseq_compress.c -o obj/src/tools/gt_condenseq_compress.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_compress.o cc -c src/tools/gt_condenseq_search.c -o obj/src/tools/gt_condenseq_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_search.o -cc -c src/tools/gt_condenseq_extract.c -o obj/src/tools/gt_condenseq_extract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_extract.o +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_consensus_sa.c -o obj/src/tools/gt_consensus_sa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_consensus_sa.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_csa.c -o obj/src/tools/gt_csa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_csa.o +cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_condenseq_info.c -o obj/src/tools/gt_condenseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_info.o cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/match/rdj-strgraph.c -o obj/src/match/rdj-strgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/match/rdj-strgraph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_congruence.c -o obj/src/tools/gt_congruence.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_congruence.o +cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_convertseq.o cc -c src/tools/gt_dot.c -o obj/src/tools/gt_dot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dot.o -cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_dev.c -o obj/src/tools/gt_dev.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dev.o -cc -c src/tools/gt_convertseq.c -o obj/src/tools/gt_convertseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_convertseq.o -cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o cc -c src/tools/gt_encseq.c -o obj/src/tools/gt_encseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq.o +cc -c src/tools/gt_dupfeat.c -o obj/src/tools/gt_dupfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_dupfeat.o +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o +cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o +cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o +cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_condenseq_hmmsearch.c -o obj/src/tools/gt_condenseq_hmmsearch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_hmmsearch.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_encseq_bitextract.c -o obj/src/tools/gt_encseq_bitextract.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bitextract.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_condenseq_blast.c -o obj/src/tools/gt_condenseq_blast.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_condenseq_blast.o -cc -c src/tools/gt_encseq_check.c -o obj/src/tools/gt_encseq_check.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_check.o -test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq2spm.c -o obj/src/tools/gt_encseq2spm.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq2spm.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_encseq_bench.c -o obj/src/tools/gt_encseq_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_bench.o +cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_encseq_md5.c -o obj/src/tools/gt_encseq_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_md5.o cc -c src/tools/gt_encseq_decode.c -o obj/src/tools/gt_encseq_decode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_decode.o test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o +cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_eval.c -o obj/src/tools/gt_eval.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_eval.o -cc -c src/tools/gt_encseq_encode.c -o obj/src/tools/gt_encseq_encode.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_encode.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_extractfeat.c -o obj/src/tools/gt_extractfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractfeat.o +cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o +cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractseq.o cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o +cc -c src/tools/gt_encseq_sample.c -o obj/src/tools/gt_encseq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_sample.o +cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_encseq_info.c -o obj/src/tools/gt_encseq_info.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_encseq_info.o cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_fastq_sample.c -o obj/src/tools/gt_fastq_sample.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fastq_sample.o -cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o -cc -c src/tools/gt_featureindex.c -o obj/src/tools/gt_featureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_featureindex.o -cc -c src/tools/gt_extractseq.c -o obj/src/tools/gt_extractseq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extractseq.o -cc -c src/tools/gt_gff3_to_gtf.c -o obj/src/tools/gt_gff3_to_gtf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3_to_gtf.o cc -c src/tools/gt_gff3validator.c -o obj/src/tools/gt_gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3validator.o +cc -c src/tools/gt_gtf_to_gff3.c -o obj/src/tools/gt_gtf_to_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gtf_to_gff3.o +cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o +cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o cc -c src/tools/gt_guessprot.c -o obj/src/tools/gt_guessprot.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_guessprot.o -cc -c src/tools/gt_extracttarget.c -o obj/src/tools/gt_extracttarget.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_extracttarget.o +cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gff3.c -o obj/src/tools/gt_gff3.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gff3.o -cc -c src/tools/gt_id_to_md5.c -o obj/src/tools/gt_id_to_md5.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_id_to_md5.o cc -c src/tools/gt_idxlocali.c -o obj/src/tools/gt_idxlocali.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_idxlocali.o -cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o +cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_fingerprint.c -o obj/src/tools/gt_fingerprint.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_fingerprint.o test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_genomediff.c -o obj/src/tools/gt_genomediff.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_genomediff.o +cc -c src/tools/gt_inlineseq_add.c -o obj/src/tools/gt_inlineseq_add.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_add.o +cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o +cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_gdiffcalc.c -o obj/src/tools/gt_gdiffcalc.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_gdiffcalc.o +cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_loccheck.o +cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_interfeat.c -o obj/src/tools/gt_interfeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_interfeat.o cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_inlineseq_split.c -o obj/src/tools/gt_inlineseq_split.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_inlineseq_split.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_loccheck.c -o obj/src/tools/gt_loccheck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_loccheck.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_hop.c -o obj/src/tools/gt_hop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_hop.o -cc -c src/tools/gt_magicmatch.c -o obj/src/tools/gt_magicmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_magicmatch.o -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o cc -c src/tools/gt_md5_to_id.c -o obj/src/tools/gt_md5_to_id.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_md5_to_id.o -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o +cc -c src/tools/gt_mergeesa.c -o obj/src/tools/gt_mergeesa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergeesa.o cc -c src/tools/gt_mergefeat.c -o obj/src/tools/gt_mergefeat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mergefeat.o cc -c src/tools/gt_merge.c -o obj/src/tools/gt_merge.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_merge.o -cc -c src/tools/gt_mgth.c -o obj/src/tools/gt_mgth.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mgth.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_kmer_database.c -o obj/src/tools/gt_kmer_database.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_kmer_database.o +cc -c src/tools/gt_mkfmindex.c -o obj/src/tools/gt_mkfmindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfmindex.o +cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o cc -c src/tools/gt_matstat.c -o obj/src/tools/gt_matstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matstat.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_matchtool.c -o obj/src/tools/gt_matchtool.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_matchtool.o +cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o -cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_mmapandread.c -o obj/src/tools/gt_mmapandread.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mmapandread.o +cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_packedindex.c -o obj/src/tools/gt_packedindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_mkfeatureindex.c -o obj/src/tools/gt_mkfeatureindex.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_mkfeatureindex.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o +cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_parsexrf.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_orffinder.c -o obj/src/tools/gt_orffinder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_orffinder.o cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o -cc -c src/tools/gt_packedindex_chk_integrity.c -o obj/src/tools/gt_packedindex_chk_integrity.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_integrity.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_packedindex_mkctxmap.c -o obj/src/tools/gt_packedindex_mkctxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_mkctxmap.o -cc -c src/tools/gt_parsexrf.c -o obj/src/tools/gt_parsexrf.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_parsexrf.o -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o -cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o -cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_packedindex_trsuftab.c -o obj/src/tools/gt_packedindex_trsuftab.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_trsuftab.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_prebwt.c -o obj/src/tools/gt_prebwt.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_prebwt.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner.c -o obj/src/tools/gt_readjoiner.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_linspace_align.c -o obj/src/tools/gt_linspace_align.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_linspace_align.o -cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_packedindex_chk_search.c -o obj/src/tools/gt_packedindex_chk_search.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_packedindex_chk_search.o +cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o +cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_patternmatch.c -o obj/src/tools/gt_patternmatch.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_patternmatch.o -cc -c src/tools/gt_paircmp.c -o obj/src/tools/gt_paircmp.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_paircmp.o cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o +cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_correct.c -o obj/src/tools/gt_readjoiner_correct.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_correct.o -test -d obj/src/tools || mkdir -p obj/src/tools test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_readjoiner_asqg.c -o obj/src/tools/gt_readjoiner_asqg.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_asqg.o -cc -c src/tools/gt_readjoiner_cgraph.c -o obj/src/tools/gt_readjoiner_cgraph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cgraph.o -cc -c src/tools/gt_readjoiner_cnttest.c -o obj/src/tools/gt_readjoiner_cnttest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_cnttest.o -cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o +cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o cc -c src/tools/gt_regioncov.c -o obj/src/tools/gt_regioncov.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_regioncov.o +cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o +cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o test -d obj/src/tools || mkdir -p obj/src/tools +test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readjoiner_spmtest.c -o obj/src/tools/gt_readjoiner_spmtest.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_spmtest.o cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readjoiner_gfa.c -o obj/src/tools/gt_readjoiner_gfa.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_gfa.o -cc -c src/tools/gt_readjoiner_overlap.c -o obj/src/tools/gt_readjoiner_overlap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_overlap.o cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o +cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o +cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o +cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readreads.c -o obj/src/tools/gt_readreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readreads.o cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_sam_interface.c -o obj/src/tools/gt_sam_interface.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sam_interface.o -cc -c src/tools/gt_readjoiner_prefilter.c -o obj/src/tools/gt_readjoiner_prefilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_prefilter.o cc -c src/tools/gt_script_filter.c -o obj/src/tools/gt_script_filter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_script_filter.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_readjoiner_graph.c -o obj/src/tools/gt_readjoiner_graph.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_graph.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_readjoiner_assembly.c -o obj/src/tools/gt_readjoiner_assembly.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_readjoiner_assembly.o -cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o +cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o cc -c src/tools/gt_select.c -o obj/src/tools/gt_select.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_select.o +cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_seqids.c -o obj/src/tools/gt_seqids.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqids.o cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seq.c -o obj/src/tools/gt_seq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seq.o +cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_sain.c -o obj/src/tools/gt_sain.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sain.o cc -c src/tools/gt_seqlensort.c -o obj/src/tools/gt_seqlensort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqlensort.o -cc -c src/tools/gt_seqmutate.c -o obj/src/tools/gt_seqmutate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqmutate.o +cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_seqfilter.c -o obj/src/tools/gt_seqfilter.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqfilter.o +cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 @@ -4066,113 +4104,112 @@ cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqtransform.c -o obj/src/tools/gt_seqtransform.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtransform.o +cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sequniq.o +cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_repfind.c -o obj/src/tools/gt_repfind.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_repfind.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_sequniq.c -o obj/src/tools/gt_sequniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sequniq.o -cc -c src/tools/gt_seqtranslate.c -o obj/src/tools/gt_seqtranslate.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqtranslate.o +cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o +cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o +cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqorder.c -o obj/src/tools/gt_seqorder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqorder.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_seqcorrect.c -o obj/src/tools/gt_seqcorrect.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqcorrect.o +cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o cc -c src/tools/gt_shulen.c -o obj/src/tools/gt_shulen.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shulen.o +cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/tools/gt_snpper.c -o obj/src/tools/gt_snpper.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_snpper.o -cc -c src/tools/gt_seed_extend.c -o obj/src/tools/gt_seed_extend.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seed_extend.o -cc -c src/tools/gt_seqstat.c -o obj/src/tools/gt_seqstat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_seqstat.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_show_seedext.c -o obj/src/tools/gt_show_seedext.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_show_seedext.o cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_shredder.c -o obj/src/tools/gt_shredder.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_shredder.o cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_splicesiteinfo.c -o obj/src/tools/gt_splicesiteinfo.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splicesiteinfo.o +cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o +test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o +cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_skproto.c -o obj/src/tools/gt_skproto.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_skproto.o test -d obj/src/tools || mkdir -p obj/src/tools -cc -c src/tools/gt_suffixerator.c -o obj/src/tools/gt_suffixerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_suffixerator.o cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_stat.c -o obj/src/tools/gt_stat.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_stat.o -cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o cc -c src/tools/gt_simreads.c -o obj/src/tools/gt_simreads.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_simreads.o +cc -c src/tools/gt_speck.c -o obj/src/tools/gt_speck.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_speck.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o +cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_template.o test -d obj/src/tools || mkdir -p obj/src/tools +cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splitfasta.o test -d obj/src/tools || mkdir -p obj/src/tools cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tagerator.c -o obj/src/tools/gt_tagerator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tagerator.o -cc -c src/tools/gt_splitfasta.c -o obj/src/tools/gt_splitfasta.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_splitfasta.o -cc -c src/tools/gt_trieins.c -o obj/src/tools/gt_trieins.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_trieins.o -cc -c src/tools/gt_template.c -o obj/src/tools/gt_template.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_template.o -test -d obj/src/examples || mkdir -p obj/src/examples test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_uniq.o -cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o test -d obj/src/examples || mkdir -p obj/src/examples +cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_uniq.c -o obj/src/tools/gt_uniq.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_uniq.o +test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/noop.c -o obj/src/examples/noop.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/tools/gt_wtree.c -o obj/src/tools/gt_wtree.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree.o +cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 +cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o +cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/custom_stream.o +cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tir.o +cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o test -d obj/src/examples || mkdir -p obj/src/examples cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples -cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 test -d obj/src/examples || mkdir -p obj/src/examples +cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.o -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wunused-parameter -pipe -fPIC -Wpointer-arith -Wno-unknown-pragmas -O3 -cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o -cc -c src/tools/gt_tir.c -o obj/src/tools/gt_tir.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tir.o -cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o -cc -c src/examples/custom_stream.c -o obj/src/examples/custom_stream.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/custom_stream.o -cc -c src/examples/gff3validator.c -o obj/src/examples/gff3validator.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3validator.o -cc -c src/examples/noop.c -o obj/src/examples/noop.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/noop.o -cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o -cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o -cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed.o -cc -c src/examples/gff3sort.c -o obj/src/examples/gff3sort.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/gff3sort.o test -d lib || mkdir -p lib +ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o test -d lib || mkdir -p lib cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Wl,--version-script=obj/public_symbols.lst \ -Llib -shared \ -Wl,-soname,libgenometools.so.0 obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o \ -o lib/libgenometools.so.0 -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 /usr/lib/libbam.a -ar r lib/libgenometools.a obj/src/core/alphabet.o obj/src/core/array.o obj/src/core/array2dim.o obj/src/core/array2dim_sparse.o obj/src/core/array3dim.o obj/src/core/basename.o obj/src/core/bioseq.o obj/src/core/bioseq_col.o obj/src/core/bioseq_iterator.o obj/src/core/bitbuffer.o obj/src/core/bitpackstringop.o obj/src/core/bitpackstringop16.o obj/src/core/bitpackstringop32.o obj/src/core/bitpackstringop64.o obj/src/core/bitpackstringop8.o obj/src/core/bittab.o obj/src/core/bool_matrix.o obj/src/core/bsearch.o obj/src/core/byte_popcount.o obj/src/core/byte_select.o obj/src/core/checkbitpackarray.o obj/src/core/checkbitpackstring-int.o obj/src/core/checkbitpackstring.o obj/src/core/checkbitpackstring16.o obj/src/core/checkbitpackstring32.o obj/src/core/checkbitpackstring64.o obj/src/core/checkbitpackstring8.o obj/src/core/class_alloc.o obj/src/core/class_alloc_lock.o obj/src/core/codon_iterator.o obj/src/core/codon_iterator_encseq.o obj/src/core/codon_iterator_simple.o obj/src/core/colorspace.o obj/src/core/combinatorics.o obj/src/core/compact_ulong_store.o obj/src/core/compat.o obj/src/core/complement.o obj/src/core/countingsort.o obj/src/core/cstr.o obj/src/core/cstr_array.o obj/src/core/cstr_table.o obj/src/core/csvline_reader.o obj/src/core/desc_buffer.o obj/src/core/disc_distri.o obj/src/core/dlist.o obj/src/core/dual-pivot-qsort.o obj/src/core/dyn_bittab.o obj/src/core/dynalloc.o obj/src/core/eansi.o obj/src/core/ebzlib.o obj/src/core/encseq.o obj/src/core/encseq_access_type.o obj/src/core/encseq_col.o obj/src/core/encseq_metadata.o obj/src/core/encseq_options.o obj/src/core/encseq_ptr.o obj/src/core/endianess.o obj/src/core/error.o obj/src/core/example.o obj/src/core/example_a.o obj/src/core/example_b.o obj/src/core/ezlib.o obj/src/core/fa.o obj/src/core/fasta.o obj/src/core/fasta_reader.o obj/src/core/fasta_reader_fsm.o obj/src/core/fasta_reader_rec.o obj/src/core/fasta_reader_seqit.o obj/src/core/fastq.o obj/src/core/file.o obj/src/core/fileutils.o obj/src/core/gc_content.o obj/src/core/grep.o obj/src/core/gtdatapath.o obj/src/core/hashmap.o obj/src/core/hashtable.o obj/src/core/init.o obj/src/core/interval_tree.o obj/src/core/io.o obj/src/core/log.o obj/src/core/logger.o obj/src/core/ma.o obj/src/core/mapspec.o obj/src/core/mathsupport.o obj/src/core/md5_encoder.o obj/src/core/md5_fingerprint.o obj/src/core/md5_seqid.o obj/src/core/md5_tab.o obj/src/core/msort.o obj/src/core/multithread.o obj/src/core/option.o obj/src/core/orf.o obj/src/core/output_file.o obj/src/core/parseutils.o obj/src/core/password_entry.o obj/src/core/phase.o obj/src/core/process.o obj/src/core/progressbar.o obj/src/core/qsort-ulong.o obj/src/core/qsort_r.o obj/src/core/quality.o obj/src/core/queue.o obj/src/core/radix_sort.o obj/src/core/range.o obj/src/core/readmode.o obj/src/core/safearith.o obj/src/core/score_function.o obj/src/core/score_matrix.o obj/src/core/seq.o obj/src/core/seq_col.o obj/src/core/seq_info_cache.o obj/src/core/seq_iterator.o obj/src/core/seq_iterator_fastq.o obj/src/core/seq_iterator_sequence_buffer.o obj/src/core/sequence_buffer.o obj/src/core/sequence_buffer_dust.o obj/src/core/sequence_buffer_embl.o obj/src/core/sequence_buffer_fasta.o obj/src/core/sequence_buffer_fastq.o obj/src/core/sequence_buffer_gb.o obj/src/core/sequence_buffer_plain.o obj/src/core/showtime.o obj/src/core/sig.o obj/src/core/spacepeak.o obj/src/core/splitter.o obj/src/core/str.o obj/src/core/str_array.o obj/src/core/str_cache.o obj/src/core/strand.o obj/src/core/strcmp.o obj/src/core/string_distri.o obj/src/core/symbol.o obj/src/core/thread.o obj/src/core/timer.o obj/src/core/tokenizer.o obj/src/core/tool.o obj/src/core/tool_iterator.o obj/src/core/toolbox.o obj/src/core/tooldriver.o obj/src/core/trans_table.o obj/src/core/translator.o obj/src/core/unit_testing.o obj/src/core/version.o obj/src/core/versionfunc.o obj/src/core/warning.o obj/src/core/xansi.o obj/src/core/xbsd.o obj/src/core/xbzlib.o obj/src/core/xposix.o obj/src/core/xzlib.o obj/src/core/yarandom.o obj/src/extended/add_ids_stream.o obj/src/extended/add_ids_visitor.o obj/src/extended/add_introns_stream.o obj/src/extended/affinealign.o obj/src/extended/aligned_segment.o obj/src/extended/aligned_segments_pile.o obj/src/extended/alignment.o obj/src/extended/anno_db_gfflike.o obj/src/extended/anno_db_schema.o obj/src/extended/array_in_stream.o obj/src/extended/array_out_stream.o obj/src/extended/assembly_stats_calculator.o obj/src/extended/bed_in_stream.o obj/src/extended/bed_parser.o obj/src/extended/bitinstream.o obj/src/extended/bitoutstream.o obj/src/extended/blast_process_call.o obj/src/extended/buffer_stream.o obj/src/extended/cds_check_stream.o obj/src/extended/cds_check_visitor.o obj/src/extended/cds_stream.o obj/src/extended/cds_visitor.o obj/src/extended/chain.o obj/src/extended/check_boundaries_visitor.o obj/src/extended/chseqids_stream.o obj/src/extended/clustered_set.o obj/src/extended/clustered_set_uf.o obj/src/extended/coin_hmm.o obj/src/extended/collect_ids_visitor.o obj/src/extended/comment_node.o obj/src/extended/compressed_bitsequence.o obj/src/extended/condenseq.o obj/src/extended/condenseq_creator.o obj/src/extended/condenseq_search_arguments.o obj/src/extended/consensus_sa.o obj/src/extended/csa_gene.o obj/src/extended/csa_splice_form.o obj/src/extended/csa_stream.o obj/src/extended/csa_variable_strands.o obj/src/extended/csa_visitor.o obj/src/extended/cstr_iterator.o obj/src/extended/diagonalbandalign.o obj/src/extended/diagonalbandalign_affinegapcost.o obj/src/extended/dice_hmm.o obj/src/extended/dot_out_stream.o obj/src/extended/dot_visitor.o obj/src/extended/dup_feature_stream.o obj/src/extended/dup_feature_visitor.o obj/src/extended/editscript.o obj/src/extended/elias_gamma.o obj/src/extended/encdesc.o obj/src/extended/encdesc_header_io.o obj/src/extended/eof_node.o obj/src/extended/evaluator.o obj/src/extended/extract_feature_sequence.o obj/src/extended/extract_feature_stream.o obj/src/extended/extract_feature_visitor.o obj/src/extended/fasta_header_iterator.o obj/src/extended/feature_in_stream.o obj/src/extended/feature_index.o obj/src/extended/feature_index_memory.o obj/src/extended/feature_info.o obj/src/extended/feature_node.o obj/src/extended/feature_node_iterator.o obj/src/extended/feature_node_observer.o obj/src/extended/feature_out_stream.o obj/src/extended/feature_stream.o obj/src/extended/feature_visitor.o obj/src/extended/gap_str.o obj/src/extended/genome_node.o obj/src/extended/gff3_escaping.o obj/src/extended/gff3_in_stream.o obj/src/extended/gff3_in_stream_plain.o obj/src/extended/gff3_linesorted_out_stream.o obj/src/extended/gff3_numsorted_out_stream.o obj/src/extended/gff3_out_stream.o obj/src/extended/gff3_output.o obj/src/extended/gff3_parser.o obj/src/extended/gff3_visitor.o obj/src/extended/globalchaining.o obj/src/extended/golomb.o obj/src/extended/gtdatahelp.o obj/src/extended/gtf_in_stream.o obj/src/extended/gtf_out_stream.o obj/src/extended/gtf_parser.o obj/src/extended/gtf_visitor.o obj/src/extended/hcr.o obj/src/extended/hmm.o obj/src/extended/hpol_processor.o obj/src/extended/huffcode.o obj/src/extended/id_to_md5_stream.o obj/src/extended/id_to_md5_visitor.o obj/src/extended/inter_feature_stream.o obj/src/extended/inter_feature_visitor.o obj/src/extended/intset.o obj/src/extended/intset_16.o obj/src/extended/intset_32.o obj/src/extended/intset_8.o obj/src/extended/intset_combined.o obj/src/extended/io_function_pointers.o obj/src/extended/kmer_database.o obj/src/extended/linearalign.o obj/src/extended/linearalign_affinegapcost.o obj/src/extended/linspace_management.o obj/src/extended/load_stream.o obj/src/extended/luahelper.o obj/src/extended/luaserialize.o obj/src/extended/mapping.o obj/src/extended/match.o obj/src/extended/match_blast.o obj/src/extended/match_iterator.o obj/src/extended/match_iterator_blast.o obj/src/extended/match_iterator_last.o obj/src/extended/match_iterator_open.o obj/src/extended/match_iterator_sw.o obj/src/extended/match_last.o obj/src/extended/match_open.o obj/src/extended/match_sw.o obj/src/extended/match_visitor.o obj/src/extended/maxcoordvalue.o obj/src/extended/md5_to_id_stream.o obj/src/extended/md5_to_id_visitor.o obj/src/extended/md5set.o obj/src/extended/merge_feature_stream.o obj/src/extended/merge_feature_visitor.o obj/src/extended/merge_stream.o obj/src/extended/meta_node.o obj/src/extended/multi_sanitizer_visitor.o obj/src/extended/multieoplist.o obj/src/extended/mutate.o obj/src/extended/node_stream.o obj/src/extended/node_visitor.o obj/src/extended/obo_parse_tree.o obj/src/extended/obo_stanza.o obj/src/extended/orf_finder_stream.o obj/src/extended/orf_finder_visitor.o obj/src/extended/orf_iterator.o obj/src/extended/orphanage.o obj/src/extended/permute_words.o obj/src/extended/popcount_tab.o obj/src/extended/priority_queue.o obj/src/extended/ranked_list.o obj/src/extended/rbtree.o obj/src/extended/rcr.o obj/src/extended/rdb.o obj/src/extended/rdb_sqlite.o obj/src/extended/rdb_visitor.o obj/src/extended/reconstructalignment.o obj/src/extended/region_mapping.o obj/src/extended/region_node.o obj/src/extended/region_node_builder.o obj/src/extended/regioncov_visitor.o obj/src/extended/regular_seqid.o obj/src/extended/reverse.o obj/src/extended/rmq.o obj/src/extended/safe_popen.o obj/src/extended/sam_alignment.o obj/src/extended/sam_query_name_iterator.o obj/src/extended/samfile_encseq_mapping.o obj/src/extended/samfile_iterator.o obj/src/extended/sampling.o obj/src/extended/scorehandler.o obj/src/extended/script_filter.o obj/src/extended/script_wrapper_stream.o obj/src/extended/script_wrapper_visitor.o obj/src/extended/select_stream.o obj/src/extended/select_visitor.o obj/src/extended/seqid2file.o obj/src/extended/seqid2seqnum_mapping.o obj/src/extended/seqpos_classifier.o obj/src/extended/sequence_node.o obj/src/extended/sequence_node_add_stream.o obj/src/extended/sequence_node_out_stream.o obj/src/extended/sequence_node_out_visitor.o obj/src/extended/set_source_visitor.o obj/src/extended/shredder.o obj/src/extended/snp_annotator_stream.o obj/src/extended/snp_annotator_visitor.o obj/src/extended/sort_stream.o obj/src/extended/spec_results.o obj/src/extended/spec_visitor.o obj/src/extended/splice_site_info_stream.o obj/src/extended/splice_site_info_visitor.o obj/src/extended/splicedseq.o obj/src/extended/squarealign.o obj/src/extended/sspliced_alignment.o obj/src/extended/sspliced_alignment_parsing.o obj/src/extended/stat_stream.o obj/src/extended/stat_visitor.o obj/src/extended/stream_evaluator.o obj/src/extended/string_matching.o obj/src/extended/swalign.o obj/src/extended/tag_value_map.o obj/src/extended/targetbest_select_stream.o obj/src/extended/tidy_region_node_stream.o obj/src/extended/tidy_region_node_visitor.o obj/src/extended/tir_stream.o obj/src/extended/transcript_bittabs.o obj/src/extended/transcript_counts.o obj/src/extended/transcript_evaluators.o obj/src/extended/transcript_exons.o obj/src/extended/transcript_used_exons.o obj/src/extended/type_checker.o obj/src/extended/type_checker_builtin.o obj/src/extended/type_checker_obo.o obj/src/extended/type_graph.o obj/src/extended/type_node.o obj/src/extended/typecheck_info.o obj/src/extended/uint64hashtable.o obj/src/extended/union_find.o obj/src/extended/uniq_stream.o obj/src/extended/visitor_stream.o obj/src/extended/wtree.o obj/src/extended/wtree_encseq.o obj/src/extended/xrf_abbr_entry.o obj/src/extended/xrf_abbr_parse_tree.o obj/src/extended/xrf_checker.o obj/src/extended/xrfcheck_info.o obj/src/gtlua/alphabet_lua.o obj/src/gtlua/annotationsketch_lua.o obj/src/gtlua/bittab_lua.o obj/src/gtlua/canvas_lua.o obj/src/gtlua/cds_stream_lua.o obj/src/gtlua/csa_stream_lua.o obj/src/gtlua/diagram_lua.o obj/src/gtlua/encseq_lua.o obj/src/gtlua/feature_index_lua.o obj/src/gtlua/feature_node_iterator_lua.o obj/src/gtlua/feature_stream_lua.o obj/src/gtlua/feature_visitor_lua.o obj/src/gtlua/genome_node_lua.o obj/src/gtlua/genome_stream_lua.o obj/src/gtlua/genome_visitor_lua.o obj/src/gtlua/gt_lua.o obj/src/gtlua/gtcore_lua.o obj/src/gtlua/gtext_lua.o obj/src/gtlua/image_info_lua.o obj/src/gtlua/layout_lua.o obj/src/gtlua/mathsupport_lua.o obj/src/gtlua/range_lua.o obj/src/gtlua/region_mapping_lua.o obj/src/gtlua/score_matrix_lua.o obj/src/gtlua/stream_evaluator_lua.o obj/src/gtlua/translate_lua.o obj/src/match/apmeoveridx.o obj/src/match/asqg_writer.o obj/src/match/bare-encseq.o obj/src/match/bcktab.o obj/src/match/cgr_spacedseed.o obj/src/match/chain2dim.o obj/src/match/chainofin.o obj/src/match/cutendpfx.o obj/src/match/dbs_spaced_seeds.o obj/src/match/diagband-struct.o obj/src/match/diagbandseed.o obj/src/match/dist-short.o obj/src/match/echoseq.o obj/src/match/eis-blockcomp-param.o obj/src/match/eis-blockcomp.o obj/src/match/eis-bwtseq-construct.o obj/src/match/eis-bwtseq-context-param.o obj/src/match/eis-bwtseq-context.o obj/src/match/eis-bwtseq-extinfo.o obj/src/match/eis-bwtseq-param.o obj/src/match/eis-bwtseq-sass.o obj/src/match/eis-bwtseq.o obj/src/match/eis-encidxseq-construct.o obj/src/match/eis-encidxseq-param.o obj/src/match/eis-encidxseq.o obj/src/match/eis-mrangealphabet.o obj/src/match/eis-sa-common.o obj/src/match/eis-seqblocktranslate.o obj/src/match/eis-seqranges.o obj/src/match/eis-sequencemultiread.o obj/src/match/eis-specialsrank.o obj/src/match/eis-suffixarray-interface.o obj/src/match/eis-suffixerator-interface.o obj/src/match/eis-voiditf.o obj/src/match/encseq2offset.o obj/src/match/enum-patt.o obj/src/match/esa-bottomup.o obj/src/match/esa-dfs.o obj/src/match/esa-lcpintervals.o obj/src/match/esa-map.o obj/src/match/esa-maxpairs.o obj/src/match/esa-merge.o obj/src/match/esa-minunique.o obj/src/match/esa-mmsearch.o obj/src/match/esa-scanprj.o obj/src/match/esa-seqread.o obj/src/match/esa-shulen.o obj/src/match/esa-splititv-simple.o obj/src/match/esa-splititv.o obj/src/match/esa-spmitvs.o obj/src/match/esa-spmsk.o obj/src/match/esa_lcpintervals_visitor.o obj/src/match/esa_spmitvs_visitor.o obj/src/match/esa_visitor.o obj/src/match/firstcodes-accum.o obj/src/match/firstcodes-cache.o obj/src/match/firstcodes-insert.o obj/src/match/firstcodes-psbuf.o obj/src/match/firstcodes-scan.o obj/src/match/firstcodes-spacelog.o obj/src/match/firstcodes-tab.o obj/src/match/firstcodes.o obj/src/match/fmi-fwduni.o obj/src/match/fmi-keyval.o obj/src/match/fmi-locate.o obj/src/match/fmi-map.o obj/src/match/fmi-mapspec.o obj/src/match/fmi-mkindex.o obj/src/match/fmi-save.o obj/src/match/fmi-sufbwtstream.o obj/src/match/ft-eoplist.o obj/src/match/ft-front-generation.o obj/src/match/ft-front-prune.o obj/src/match/ft-polish.o obj/src/match/ft-trimstat.o obj/src/match/gfa_writer.o obj/src/match/giextract.o obj/src/match/greedyedist.o obj/src/match/greedyfwdmat.o obj/src/match/hashfirstcodes.o obj/src/match/hlk-version.o obj/src/match/hplstore.o obj/src/match/idx-limdfs.o obj/src/match/idxlocali.o obj/src/match/idxlocalidp.o obj/src/match/idxlocalisw.o obj/src/match/index_options.o obj/src/match/initbasepower.o obj/src/match/initeqsvec.o obj/src/match/iter-window.o obj/src/match/karlin_altschul_stat.o obj/src/match/kmer2string.o obj/src/match/lua_tools.o obj/src/match/marksubstring.o obj/src/match/merger-trie.o obj/src/match/mssufpat.o obj/src/match/myersapm.o obj/src/match/nullcols.o obj/src/match/optionargmode.o obj/src/match/pck-count-nodes.o obj/src/match/pckbucket.o obj/src/match/pckdfs.o obj/src/match/prsqualint.o obj/src/match/pssm.o obj/src/match/querymatch-align.o obj/src/match/querymatch-display.o obj/src/match/querymatch.o obj/src/match/radixsort_str.o obj/src/match/randomcodes-correct.o obj/src/match/randomcodes-find-seldom.o obj/src/match/randomcodes-hpcorrect.o obj/src/match/randomcodes-insert.o obj/src/match/randomcodes-sfx-partssuf.o obj/src/match/randomcodes-tab.o obj/src/match/randomcodes.o obj/src/match/rdj-cntlist.o obj/src/match/rdj-contfind-bottomup.o obj/src/match/rdj-contfinder.o obj/src/match/rdj-contigpaths.o obj/src/match/rdj-contigs-graph.o obj/src/match/rdj-contigs-writer.o obj/src/match/rdj-errfind.o obj/src/match/rdj-ovlfind-bf.o obj/src/match/rdj-ovlfind-dp.o obj/src/match/rdj-ovlfind-gusfield.o obj/src/match/rdj-ovlfind-kmp.o obj/src/match/rdj-pairwise.o obj/src/match/rdj-spmfind.o obj/src/match/rdj-spmlist.o obj/src/match/rdj-spmproc.o obj/src/match/rdj-strgraph.o obj/src/match/rdj-twobitenc-editor.o obj/src/match/rdj-version.o obj/src/match/reads2twobit.o obj/src/match/reads_libraries_table.o obj/src/match/rectangle-store.o obj/src/match/revcompl.o obj/src/match/seed-extend-iter.o obj/src/match/seed-extend.o obj/src/match/seed_extend_parts.o obj/src/match/seqabstract.o obj/src/match/seqnumrelpos.o obj/src/match/sfx-apfxlen.o obj/src/match/sfx-bentsedg.o obj/src/match/sfx-bltrie.o obj/src/match/sfx-copysort.o obj/src/match/sfx-diffcov.o obj/src/match/sfx-enumcodes.o obj/src/match/sfx-lcpvalues.o obj/src/match/sfx-linlcp.o obj/src/match/sfx-lwcheck.o obj/src/match/sfx-mappedstr.o obj/src/match/sfx-maprange.o obj/src/match/sfx-opt.o obj/src/match/sfx-outprj.o obj/src/match/sfx-partssuf.o obj/src/match/sfx-radixsort.o obj/src/match/sfx-run.o obj/src/match/sfx-sain.o obj/src/match/sfx-shortreadsort.o obj/src/match/sfx-suffixer.o obj/src/match/sfx-suffixgetset.o obj/src/match/sfx-suftaborder.o obj/src/match/shu-dfs.o obj/src/match/shu-divergence.o obj/src/match/shu-encseq-gc.o obj/src/match/shu-genomediff.o obj/src/match/shu_unitfile.o obj/src/match/spaced-seeds.o obj/src/match/specialrank.o obj/src/match/spmsuftab.o obj/src/match/squarededist.o obj/src/match/substriter.o obj/src/match/tagerator.o obj/src/match/test-mappedstr.o obj/src/match/test-maxpairs.o obj/src/match/test-mergeesa.o obj/src/match/test-mtrieins.o obj/src/match/test-pairwise.o obj/src/match/turnwheels.o obj/src/match/twobits2kmers.o obj/src/match/tyr-map.o obj/src/match/tyr-mersplit.o obj/src/match/tyr-mkindex.o obj/src/match/tyr-occratio.o obj/src/match/tyr-search.o obj/src/match/xdrop.o obj/src/ltr/gt_ltrclustering.o obj/src/ltr/gt_ltrdigest.o obj/src/ltr/gt_ltrharvest.o obj/src/ltr/ltr_classify_stream.o obj/src/ltr/ltr_cluster_prepare_seq_visitor.o obj/src/ltr/ltr_cluster_stream.o obj/src/ltr/ltr_four_char_motif.o obj/src/ltr/ltr_input_check_visitor.o obj/src/ltr/ltr_orf_annotator_stream.o obj/src/ltr/ltr_refseq_match_stream.o obj/src/ltr/ltrdigest_file_out_stream.o obj/src/ltr/ltrdigest_pbs_visitor.o obj/src/ltr/ltrdigest_pdom_visitor.o obj/src/ltr/ltrdigest_ppt_visitor.o obj/src/ltr/ltrdigest_strand_assign_visitor.o obj/src/ltr/ltrharvest_fasta_out_stream.o obj/src/ltr/ltrharvest_fasta_out_visitor.o obj/src/ltr/ltrharvest_stream.o obj/src/ltr/ltrharvest_tabout_stream.o obj/src/ltr/ltrharvest_tabout_visitor.o obj/src/ltr/pdom_model_set.o obj/src/mgth/metagenomethreader.o obj/src/mgth/mg_codon.o obj/src/mgth/mg_combinedscore.o obj/src/mgth/mg_compute_gene_prediction.o obj/src/mgth/mg_computepath.o obj/src/mgth/mg_outputwriter.o obj/src/mgth/mg_reverse.o obj/src/mgth/mg_xmlparser.o obj/src/annotationsketch/block.o obj/src/annotationsketch/canvas.o obj/src/annotationsketch/canvas_cairo.o obj/src/annotationsketch/canvas_cairo_context.o obj/src/annotationsketch/canvas_cairo_file.o obj/src/annotationsketch/color.o obj/src/annotationsketch/coords.o obj/src/annotationsketch/custom_track.o obj/src/annotationsketch/custom_track_example.o obj/src/annotationsketch/custom_track_gc_content.o obj/src/annotationsketch/custom_track_script_wrapper.o obj/src/annotationsketch/diagram.o obj/src/annotationsketch/drawing_range.o obj/src/annotationsketch/element.o obj/src/annotationsketch/graphics.o obj/src/annotationsketch/graphics_cairo.o obj/src/annotationsketch/gt_sketch.o obj/src/annotationsketch/gt_sketch_page.o obj/src/annotationsketch/image_info.o obj/src/annotationsketch/layout.o obj/src/annotationsketch/line.o obj/src/annotationsketch/line_breaker.o obj/src/annotationsketch/line_breaker_bases.o obj/src/annotationsketch/line_breaker_captions.o obj/src/annotationsketch/luastyle.o obj/src/annotationsketch/rec_map.o obj/src/annotationsketch/style.o obj/src/annotationsketch/text_width_calculator.o obj/src/annotationsketch/text_width_calculator_cairo.o obj/src/annotationsketch/track.o -cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o ar: creating lib/libgenometools.a +cc -c src/tools/gt_wtree_bench.c -o obj/src/tools/gt_wtree_bench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_wtree_bench.o +cc -c src/examples/sketch_constructed.c -o obj/src/examples/sketch_constructed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_constructed.o +cc -c src/examples/sketch_parsed.c -o obj/src/examples/sketch_parsed.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed.o +cc -c src/examples/sketch_parsed_with_ordering.c -o obj/src/examples/sketch_parsed_with_ordering.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ordering.o cc -c src/examples/sketch_parsed_with_ctrack.c -o obj/src/examples/sketch_parsed_with_ctrack.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/examples/sketch_parsed_with_ctrack.o +cc -c src/tools/gt_tallymer.c -o obj/src/tools/gt_tallymer.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_tallymer.o cc -c src/tools/gt_sfxmap.c -o obj/src/tools/gt_sfxmap.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sfxmap.o +cc -c src/tools/gt_sortbench.c -o obj/src/tools/gt_sortbench.d -Wdate-time -D_FORTIFY_SOURCE=2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_MEMMOVE -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -DLUA_DL_DLOPEN -DLUA_USE_MKSTEMP -DGT_THREADS_ENABLED -DHAVE_SQLITE -I./src -I./obj -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -I/usr/include/lua5.1 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/cairo -I/usr/include/libpng16 -I/usr/include/freetype2 -I/usr/include/pixman-1 -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security -MM -MP -MT obj/src/tools/gt_sortbench.o test -d bin || mkdir -p bin test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples test -d bin/examples || mkdir -p bin/examples -test -d bin/examples || mkdir -p bin/examples -cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3sort cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/gt.o obj/src/gtr.o obj/src/gtt.o obj/src/interactive.o obj/src/tools/gt_bed_to_gff3.o obj/src/tools/gt_cds.o obj/src/tools/gt_chain2dim.o obj/src/tools/gt_chseqids.o obj/src/tools/gt_clean.o obj/src/tools/gt_compreads.o obj/src/tools/gt_compreads_compress.o obj/src/tools/gt_compreads_decompress.o obj/src/tools/gt_compreads_refcompress.o obj/src/tools/gt_compreads_refdecompress.o obj/src/tools/gt_compressedbits.o obj/src/tools/gt_condenseq.o obj/src/tools/gt_condenseq_blast.o obj/src/tools/gt_condenseq_compress.o obj/src/tools/gt_condenseq_extract.o obj/src/tools/gt_condenseq_hmmsearch.o obj/src/tools/gt_condenseq_info.o obj/src/tools/gt_condenseq_search.o obj/src/tools/gt_congruence.o obj/src/tools/gt_consensus_sa.o obj/src/tools/gt_convertseq.o obj/src/tools/gt_csa.o obj/src/tools/gt_dev.o obj/src/tools/gt_dot.o obj/src/tools/gt_dupfeat.o obj/src/tools/gt_encseq.o obj/src/tools/gt_encseq2spm.o obj/src/tools/gt_encseq_bench.o obj/src/tools/gt_encseq_bitextract.o obj/src/tools/gt_encseq_check.o obj/src/tools/gt_encseq_decode.o obj/src/tools/gt_encseq_encode.o obj/src/tools/gt_encseq_info.o obj/src/tools/gt_encseq_md5.o obj/src/tools/gt_encseq_sample.o obj/src/tools/gt_eval.o obj/src/tools/gt_extractfeat.o obj/src/tools/gt_extractseq.o obj/src/tools/gt_extracttarget.o obj/src/tools/gt_fastq_sample.o obj/src/tools/gt_featureindex.o obj/src/tools/gt_fingerprint.o obj/src/tools/gt_gdiffcalc.o obj/src/tools/gt_genomediff.o obj/src/tools/gt_gff3.o obj/src/tools/gt_gff3_to_gtf.o obj/src/tools/gt_gff3validator.o obj/src/tools/gt_gtf_to_gff3.o obj/src/tools/gt_guessprot.o obj/src/tools/gt_hop.o obj/src/tools/gt_id_to_md5.o obj/src/tools/gt_idxlocali.o obj/src/tools/gt_inlineseq_add.o obj/src/tools/gt_inlineseq_split.o obj/src/tools/gt_interfeat.o obj/src/tools/gt_kmer_database.o obj/src/tools/gt_linspace_align.o obj/src/tools/gt_loccheck.o obj/src/tools/gt_magicmatch.o obj/src/tools/gt_matchtool.o obj/src/tools/gt_matstat.o obj/src/tools/gt_md5_to_id.o obj/src/tools/gt_merge.o obj/src/tools/gt_mergeesa.o obj/src/tools/gt_mergefeat.o obj/src/tools/gt_mgth.o obj/src/tools/gt_mkfeatureindex.o obj/src/tools/gt_mkfmindex.o obj/src/tools/gt_mmapandread.o obj/src/tools/gt_orffinder.o obj/src/tools/gt_packedindex.o obj/src/tools/gt_packedindex_chk_integrity.o obj/src/tools/gt_packedindex_chk_search.o obj/src/tools/gt_packedindex_mkctxmap.o obj/src/tools/gt_packedindex_trsuftab.o obj/src/tools/gt_paircmp.o obj/src/tools/gt_parsexrf.o obj/src/tools/gt_patternmatch.o obj/src/tools/gt_prebwt.o obj/src/tools/gt_readjoiner.o obj/src/tools/gt_readjoiner_asqg.o obj/src/tools/gt_readjoiner_assembly.o obj/src/tools/gt_readjoiner_cgraph.o obj/src/tools/gt_readjoiner_cnttest.o obj/src/tools/gt_readjoiner_correct.o obj/src/tools/gt_readjoiner_gfa.o obj/src/tools/gt_readjoiner_graph.o obj/src/tools/gt_readjoiner_overlap.o obj/src/tools/gt_readjoiner_prefilter.o obj/src/tools/gt_readjoiner_spmtest.o obj/src/tools/gt_readreads.o obj/src/tools/gt_regioncov.o obj/src/tools/gt_repfind.o obj/src/tools/gt_sain.o obj/src/tools/gt_sam_interface.o obj/src/tools/gt_script_filter.o obj/src/tools/gt_seed_extend.o obj/src/tools/gt_select.o obj/src/tools/gt_seq.o obj/src/tools/gt_seqcorrect.o obj/src/tools/gt_seqfilter.o obj/src/tools/gt_seqids.o obj/src/tools/gt_seqlensort.o obj/src/tools/gt_seqmutate.o obj/src/tools/gt_seqorder.o obj/src/tools/gt_seqstat.o obj/src/tools/gt_seqtransform.o obj/src/tools/gt_seqtranslate.o obj/src/tools/gt_sequniq.o obj/src/tools/gt_sfxmap.o obj/src/tools/gt_show_seedext.o obj/src/tools/gt_shredder.o obj/src/tools/gt_shulen.o obj/src/tools/gt_simreads.o obj/src/tools/gt_skproto.o obj/src/tools/gt_snpper.o obj/src/tools/gt_sortbench.o obj/src/tools/gt_speck.o obj/src/tools/gt_splicesiteinfo.o obj/src/tools/gt_splitfasta.o obj/src/tools/gt_stat.o obj/src/tools/gt_suffixerator.o obj/src/tools/gt_tagerator.o obj/src/tools/gt_tallymer.o obj/src/tools/gt_template.o obj/src/tools/gt_tir.o obj/src/tools/gt_trieins.o obj/src/tools/gt_uniq.o obj/src/tools/gt_wtree.o obj/src/tools/gt_wtree_bench.o lib/libgenometools.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/gt cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/custom_stream.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/custom_stream +cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3sort.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3sort +test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/gff3validator.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/gff3validator test -d bin/examples || mkdir -p bin/examples cc -Wl,-z,relro -Wl,-z,now -L/usr/local/lib -Llib obj/src/examples/noop.o lib/libgenometools.a /usr/lib/libbam.a -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3 -o bin/examples/noop @@ -7549,55 +7586,40 @@ make -C ./doc/manuals make[3]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds/doc/manuals' test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux make[3]: [Makefile:39: readjoiner-pdf.aux] Error 1 (ignored) pdflatex readjoiner.tex && rm readjoiner.pdf -make[3]: [Makefile:40: hop-pdf.aux] Error 1 (ignored) +test -e hop-pdf.aux && mv hop-pdf.aux hop.aux +make[3]: [Makefile:39: hop-pdf.aux] Error 1 (ignored) pdflatex hop.tex && rm hop.pdf -test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux make[3]: [Makefile:39: ltrharvest-pdf.aux] Error 1 (ignored) pdflatex ltrharvest.tex && rm ltrharvest.pdf -test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux make[3]: [Makefile:39: ltrdigest-pdf.aux] Error 1 (ignored) pdflatex ltrdigest.tex && rm ltrdigest.pdf +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux make[3]: [Makefile:39: uniquesub-pdf.aux] Error 1 (ignored) pdflatex uniquesub.tex && rm uniquesub.pdf -test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -make[3]: [Makefile:39: matstat-pdf.aux] Error 1 (ignored) +make[3]: [Makefile:40: matstat-pdf.aux] Error 1 (ignored) pdflatex matstat.tex && rm matstat.pdf -test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux make[3]: [Makefile:39: mgth-pdf.aux] Error 1 (ignored) pdflatex mgth.tex && rm mgth.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -make[3]: [Makefile:40: packedindex-pdf.aux] Error 1 (ignored) -pdflatex packedindex.tex && rm packedindex.pdf -make[3]: [Makefile:40: repfind-pdf.aux] Error 1 (ignored) -pdflatex repfind.tex && rm repfind.pdf -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -head -n 6999 ../../testdata/at1MB > read1.fna +test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -echo ">" > read2.fna -cp ../../testdata/U89959_genomic.fas U89959.fna -tail -n 6945 ../../testdata/at1MB >> read2.fna -../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \ - -sprank -locfreq 32 -tis -ssp -indexname pck-human\ - -db ../../testdata/at1MB -cp ../../testdata/Q1.gz Q1.gz -test -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux +make[3]: [Makefile:39: packedindex-pdf.aux] Error 1 (ignored) +pdflatex packedindex.tex && rm packedindex.pdf faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored) -pdflatex genomediff.tex && rm genomediff.pdf +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -./findemptyoutfiles.sh +make[3]: [Makefile:39: repfind-pdf.aux] Error 1 (ignored) +pdflatex repfind.tex && rm repfind.pdf +head -n 6999 ../../testdata/at1MB > read1.fna faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. @@ -7605,6 +7627,9 @@ restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +echo ">" > read2.fna +tail -n 6945 ../../testdata/at1MB >> read2.fna +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) @@ -7613,388 +7638,361 @@ restricted \write18 enabled. This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -./execcommand.pl tallymer.tex > tallymer-tmp.tex entering extended mode -(./repfind.tex# file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists +(./ltrdigest.texThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls# file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists -# file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists -# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists - +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists -# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists -# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists -pdflatex tallymer-tmp -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clocp ../../testdata/U89959_genomic.fas U89959.fna +))This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -entering extended mode -(./matstat.tex + +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty../../bin/gt packedindex mkindex -dna -dir rev -parts 12 -bsize 10 \ + -sprank -locfreq 32 -tis -ssp -indexname pck-human\ + -db ../../testdata/at1MB + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styentering extended mode +(./readjoiner.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty))entering extended mode +(./ltrharvest.tex (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -No file repfind.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)))entering extended mode -(./readjoiner.tex -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty)entering extended mode +(./uniquesub.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty))) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg})))] -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [2 -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)entering extended mode -(./ltrdigest.tex -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)entering extended mode -(./mgth.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))entering extended mode +(./hop.tex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode +(./matstat.tex) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +No file ltrdigest.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))) +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +[1 +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty){/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styentering extended mode -(./genomediff.texentering extended mode +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./optionman.sty)entering extended mode +(./mgth.texentering extended mode (./packedindex.tex +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))) -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . - -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl -[3] -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, - -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. - - -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. - - -LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. - - -LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. - -[4] (./repfind.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - - ) -(see the transcript file for additional information))) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -No file readjoiner.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -No file genomediff.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -[Loading MPS to PDF converter (version 2006.09.02).] -)entering extended mode -(./ltrharvest.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)))) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty)) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))entering extended mode +(./repfind.tex +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -No file ltrharvest.aux. +No file readjoiner.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) [1 (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -No file mgth.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii -[Loading MPS to PDF converter (version 2006.09.02).] -) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -Output written on repfind.pdf (4 pages, 111589 bytes). -Transcript written on repfind.log. -mv repfind.aux repfind-pdf.aux -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -bibtex repfind -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))]) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -No file packedindex.aux. +LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 54. + + +Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 +\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can +-di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ +[]]. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +No file hop.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.mapThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: repfind.aux -I found no \citation commands---while reading file repfind.aux -I found no \bibdata command---while reading file repfind.aux -I found no \bibstyle command---while reading file repfind.aux -(There were 3 error messages) -make[3]: [Makefile:33: repfind-pdf.bbl] Error 2 (ignored) -test -e repfind-pdf.bbl || touch repfind-pdf.bbl -diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl -mv repfind.aux repfind-pdf.aux -test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl -pdflatex repfind.tex - [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) [1 +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) -LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. +LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. -LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. -LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. +LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. +LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -No file ltrdigest.aux. + +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. + +[1 (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)] +No file ltrharvest.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map - -LaTeX Warning: Reference `overviewOpt' on page 1 undefined on input line 106. - - -LaTeX Warning: Reference `Examples' on page 1 undefined on input line 205. +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg [1))){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -[1] [2] +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. -LaTeX Warning: Citation `gff3' on page 3 undefined on input line 249. -[3faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -] [4] [5] +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. -LaTeX Warning: Reference `different-options' on page 6 undefined on input line -493. +LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -LaTeX Warning: Reference `Example-genome' on page 6 undefined on input line 494 -. +LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. -LaTeX Warning: Reference `ExampleCluster' on page 6 undefined on input line 497 -. +[2)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd]) [3] +No file uniquesub.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty [4 +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def])) +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment') +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) (./optionman.sty +Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 +\OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 +/ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe +at +Underfull \hbox (badness 10000) in paragraph at lines 283--291 -LaTeX Warning: Citation `vmatch' on page 6 undefined on input line 502. +[5))] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [6 +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty -[6] -Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] +LaTeX Warning: Citation `GRAE:NIE:KUR:HUY:BIR:STU:FLI:2007' on page 1 undefined + on input line 64. -Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 -[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi -nner pred-inner-chr02.fsa[] -[7] -Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] +[1)] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) [7] +No file matstat.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (./optionman.sty [8))] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 +[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname + genome.fas -Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] +Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 +[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called + \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ +n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , -Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - -mat 2 -mis -2 -ins -3 -[8]} -Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l -LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] +Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 +\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g +enome.fas +[9 +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)] +No file packedindex.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [10 [1 [1]{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map (./ltrdigest.aux) -LaTeX Warning: Citation `kim:1998' on page 9 undefined on input line 694. +LaTeX Warning: There were undefined references. -Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl -tr 100 -maxlenltr 1000 -[9{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}]] +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. -LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770. + ) +(see the transcript file for additional information) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map))< +(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg/usr/share/texlive/texmf-dist/fonts +/type1/urw/times/utmb8a.pfb>) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)))< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +Output written on ltrdigest.pdf (11 pages, 198471 bytes). +Transcript written on ltrdigest.log. +mv ltrdigest.aux ltrdigest-pdf.aux +cp ../../testdata/Q1.gz Q1.gz +No file mgth.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii +[Loading MPS to PDF converter (version 2006.09.02).] +) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.stytest -e genomediff-pdf.aux && mv genomediff-pdf.aux genomediff.aux -LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i -nput line 790. +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))make[3]: [Makefile:39: genomediff-pdf.aux] Error 1 (ignored) +pdflatex genomediff.tex && rm genomediff.pdf +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}]}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] -LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i -nput line 791. +LaTeX Warning: Citation `HOP' on page 1 undefined on input line 42. -LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. -[10 +[1 LaTeX Warning: Citation `MYE:2005' on page 1 undefined on input line 57. @@ -8009,49 +8007,36 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd]) [1 -Underfull \hbox (badness 10000) in paragraph at lines 824--826 -[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom -e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . - -Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 -[][] -[11] [12]] (./ltrharvest.aux) - -LaTeX Warning: There were undefined references. - - -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] [1faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +] +Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 +[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir +ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq - ) -(see the transcript file for additional information) bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ +reads.fastq r_reads.fastq[] +[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2]> -] [7] (./readjoiner.aux) +[5]] (./hop.aux) LaTeX Warning: There were undefined references. @@ -8060,166 +8045,157 @@ ) (see the transcript file for additional information) -Output written on readjoiner.pdf (8 pages, 116059 bytes). -Transcript written on readjoiner.log. -mv ltrharvest.aux ltrharvest-pdf.aux -test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux -bibtex ltrharvest -mv readjoiner.aux readjoiner-pdf.aux -test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -bibtex readjoiner -}]) +ist/fonts/type1/urw/courier/ucrr8a.pfb> [6 [7}] (./readjoiner.aux{)< -LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 -. +LaTeX Warning: There were undefined references. -LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin -e 90. - +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. -LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 -. + ) +(see the transcript file for additional information)><]/usr/share/texlive/texmf-dist/fo +nts/type1/public/amsfonts/cm/cmr12.pfb>}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / +[2] [3] (./uniquesub.aux) -[3]entering extended mode -(./uniquesub.texThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: ltrharvest.aux -I found no \bibdata command---while reading file ltrharvest.aux -I found no \bibstyle command---while reading file ltrharvest.aux -(There were 2 error messages) -make[3]: [Makefile:33: ltrharvest-pdf.bbl] Error 2 (ignored) -test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl -diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - [4]This is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: readjoiner.aux -I found no \bibdata command---while reading file readjoiner.aux -I found no \bibstyle command---while reading file readjoiner.aux -(There were 2 error messages) -make[3]: [Makefile:35: readjoiner-pdf.bbl] Error 2 (ignored) -test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl +LaTeX Warning: There were undefined references. -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsdiff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [1mv ltrharvest.aux ltrharvest-pdf.aux -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}){/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 -[][][][][][][][][][][][][][][][][][][][][][][][] -No file genomediff.bbl. -[5]mv readjoiner.aux readjoiner-pdf.aux - (./genomediff.auxtest -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux -)]test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux -)test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. + ) +(see the transcript file for additional information) [1mv hop.aux hop-pdf.aux +mv readjoiner.aux readjoiner-pdf.aux +}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +] [3]test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux -Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 -\OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can --di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ -[]]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fdtest -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl -)pdflatex ltrharvest.tex -kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 -pdflatex readjoiner.tex +LaTeX Warning: Citation `LTRharvesturl' on page 1 undefined on input line 51. -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -LaTeX Warning: Citation `gff3' on page 1 undefined on input line 69. +LaTeX Warning: Citation `EKW07' on page 1 undefined on input line 53. -LaTeX Warning: Citation `genometools' on page 1 undefined on input line 75. +LaTeX Warning: Citation `AKO04' on page 1 undefined on input line 57. -LaTeX Warning: Citation `hmmer' on page 1 undefined on input line 78. +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 71. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fdbibtex hop +)} +Output written on uniquesub.pdf (3 pages, 106246 bytes). +Transcript written on uniquesub.log. -LaTeX Warning: Citation `pfam' on page 1 undefined on input line 80. +LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu +t line 310. -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. +[4]{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}bibtex ltrdigest +] -[1faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty] -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked +[5mv uniquesub.aux uniquesub-pdf.aux + [2] +No file packedindex.bbl. +[6./findemptyoutfiles.sh +] (./packedindex.aux)] +LaTeX Warning: There were undefined references. -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 127. +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. -LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. + ) +(see the transcript file for additional information)<}/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmmi10.pfb{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc} (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd>]) +LaTeX Warning: Citation `krause' on page 1 undefined on input line 51. -LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 166. +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd])]) -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. - -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +[1 [2> +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 196. -LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 123. +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 196. -Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 -[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te -d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA -STA -[2)) [6 -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -No file uniquesub.aux. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd))] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [7 -LaTeX Warning: Citation `GRAE:NIE:KUR:HUY:BIR:STU:FLI:2007' on page 1 undefined - on input line 64. +LaTeX Warning: Reference `forwardEQ' on page 4 undefined on input line 200. -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] [8] -Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 -[]\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname - genome.fas -Overfull \hbox (6.71515pt too wide) in paragraph at lines 570--576 -[]\OT1/ptm/m/n/12 We will also as-sume that the HMM files to be used are called - \OT1/pcr/m/n/12 HMM1.hmm\OT1/ptm/m/n/12 , \OT1/pcr/m/n/12 HMM2.hmm \OT1/ptm/m/ -n/12 and \OT1/pcr/m/n/12 HMM3.hmm\OT1/ptm/m/n/12 , +LaTeX Warning: Reference `reversedEQ' on page 4 undefined on input line 200. -Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 -\OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g -enome.fas -[9] [10]) (./ltrdigest.aux) +[4<]/usr/share/texlive/ +texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>] -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty] +ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>>/usr/share/texlive/texmf-dist/fo +nts/type1/public/amsfonts/cm/cmr12.pfb> + +LaTeX Warning: Reference `overviewOpt' on page 2 undefined on input line 123. + + +Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 +[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te +d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA +STA +[2]]<>> Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- LaTeX Warning: Reference `Examples' on page 3 undefined on input line 263. -[3])) ) +(see the transcript file for additional information) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd>/usr/share/texlive/texmf +-dist/fonts/type1/urw/times/utmri8a.pfb [4>< Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] -[5]> -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> +[5] [5]/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> +Output written on packedindex.pdf (7 pages, 169085 bytes). +Transcript written on packedindex.log. +make[3]: [Makefile:33: ltrdigest-pdf.bbl] Error 2 (ignored) +test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl + Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -8355,12 +8328,13 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6]) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) [7)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] (./mgth.aux) +[6This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: hop.aux +I found no \bibdata command---while reading file hop.aux +I found no \bibstyle command---while reading file hop.aux +(There were 2 error messages) + [7] (./mgth.aux) LaTeX Warning: There were undefined references. @@ -8368,229 +8342,122 @@ LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) -(see the transcript file for additional information) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) - -Output written on ltrdigest.pdf (11 pages, 198471 bytes). -Transcript written on ltrdigest.log. - patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))>) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) -Output written on mgth.pdf (8 pages, 140772 bytes). -Transcript written on mgth.log. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./repfind.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfgThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: ltrdigest.aux -The style file: unsrt.bst -I found no \bibdata command---while reading file ltrdigest.aux -Warning--I didn't find a database entry for "EKW07" -Warning--I didn't find a database entry for "gff3" -Warning--I didn't find a database entry for "genometools" -Warning--I didn't find a database entry for "hmmer" -Warning--I didn't find a database entry for "pfam" -(There was 1 error message) -))make[3]: [Makefile:33: ltrdigest-pdf.bbl] Error 2 (ignored) -test -e ltrdigest-pdf.bbl || touch ltrdigest-pdf.bbl +(see the transcript file for additional information) \begin{thebibliography}{} -> -> \end{thebibliography} -] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}] (./matstat.aux)mv ltrdigest.aux ltrdigest-pdf.aux -] ) -(see the transcript file for additional information)test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux -pdflatex ltrdigest.tex -{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}]test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -]bibtex mgth -] +Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 +[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi +nner pred-inner-chr02.fsa[] +[7> +] +Output written on matstat.pdf (2 pages, 100165 bytes). +Transcript written on matstat.log. +test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux +0a1,3 +> \begin{thebibliography}{} +> +> \end{thebibliography} -LaTeX Warning: Reference `Examples' on page 1 undefined on input line 116. +Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map -Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 -[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir -ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq +Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] -Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 -[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ -reads.fastq r_reads.fastq[] -[2] [1 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 -\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ -ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - -outprefix -[3]] [4 -Output written on matstat.pdf (2 pages, 100165 bytes). -Transcript written on matstat.log. -] (./hop.aux) +Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - +mat 2 -mis -2 -ins -3 +[8]mv matstat.aux matstat-pdf.aux -LaTeX Warning: There were undefined references. +Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l +LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] +LaTeX Warning: Citation `kim:1998' on page 9 undefined on input line 694. -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. - ) -(see the transcript file for additional information) [2]entering extended mode -(./readjoiner.tex +Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl +tr 100 -maxlenltr 1000 +[9mv repfind.aux repfind-pdf.aux +entering extended mode +(./genomediff.tex] LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsmv ltrdigest.aux ltrdigest-pdf.aux -LaTeX Warning: Reference `sec:packedindex:mkindex' on page 3 undefined on input - line 278. - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -Output written on hop.pdf (5 pages, 70370 bytes). -Transcript written on hop.log. -) [3]) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.stymv matstat.aux matstat-pdf.aux - -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux - +Output written on mgth.pdf (8 pages, 140772 bytes). +Transcript written on mgth.log. +))mv hop.aux hop-pdf.aux -LaTeX Warning: Reference `sec:packedindex:examples' on page 4 undefined on inpu -t line 310. -[4]bibtex matstat -mv hop.aux hop-pdf.aux +LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 770. -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stytest -e hop-pdf.aux && mv hop-pdf.aux hop.aux -bibtex hop -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i +nput line 790. -LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. +LaTeX Warning: Reference `parameters-cluster-default' on page 10 undefined on i +nput line 791. -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked -[5}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc})] -No file packedindex.bbl. -[6] (./packedindex.aux)] -LaTeX Warning: There were undefined references. +LaTeX Warning: Citation `vmatch' on page 10 undefined on input line 792. +[10 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)mv mgth.aux mgth-pdf.aux -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +Underfull \hbox (badness 10000) in paragraph at lines 824--826 +[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom +e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . - ) -(see the transcript file for additional information) (./uniquesub.aux)>>))>>{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}>> -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) [2 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: mgth.aux -I found no \bibdata command---while reading file mgth.aux -I found no \bibstyle command---while reading file mgth.aux -(There were 2 error messages) -make[3]: [Makefile:33: mgth-pdf.bbl] Error 2 (ignored) -test -e mgth-pdf.bbl || touch mgth-pdf.bbl +ist/fonts/type1/public/amsfonts/cm/cmmi10.pfb>test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.stybibtex uniquesub + +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +<)bibtex mgth +/usr/share/texlive/texmf-di +st/fonts/type1/urw/times/utmbi8a.pfb> +(./optionman.stybibtex packedindex +./execcommand.pl tallymer.tex > tallymer-tmp.tex -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . +(/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl -[3diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl -] -Output written on packedindex.pdf (7 pages, 169085 bytes). -Transcript written on packedindex.log. -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -mv mgth.aux mgth-pdf.aux +(/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.stybibtex repfind +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: readjoiner.aux +I found no \bibdata command---while reading file readjoiner.aux +I found no \bibstyle command---while reading file readjoiner.aux +(There were 2 error messages) +make[3]: [Makefile:33: readjoiner-pdf.bbl] Error 2 (ignored) +test -e readjoiner-pdf.bbl || touch readjoiner-pdf.bbl +diff readjoiner-pdf.bbl readjoiner.bbl || mv readjoiner.bbl readjoiner-pdf.bbl && rm -f readjoiner.bbl -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, -[4test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux -] (./repfind.aux -Output written on uniquesub.pdf (3 pages, 106246 bytes). -Transcript written on uniquesub.log. -)test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl - ) -(see the transcript file for additional information)This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +Output written on ltrharvest.pdf (13 pages, 171081 bytes). +Transcript written on ltrharvest.log. +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: uniquesub.aux +I found no \bibdata command---while reading file uniquesub.aux +I found no \bibstyle command---while reading file uniquesub.aux +(There were 2 error messages) +make[3]: [Makefile:35: uniquesub-pdf.bbl] Error 2 (ignored) +test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl + +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfgThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: matstat.aux I found no \citation commands---while reading file matstat.aux I found no \bibdata command---while reading file matstat.aux I found no \bibstyle command---while reading file matstat.aux (There were 3 error messages) -)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.stypdflatex matstat.tex -)This is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: hop.aux -I found no \bibdata command---while reading file hop.aux -I found no \bibstyle command---while reading file hop.aux -(There were 2 error messages) -make[3]: [Makefile:32: hop-pdf.bbl] Error 2 (ignored) -test -e hop-pdf.bbl || touch hop-pdf.bbl -diff hop-pdf.bbl hop.bbl || mv hop.bbl hop-pdf.bbl && rm -f hop.bbl -mv packedindex.aux packedindex-pdf.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux -mv hop.aux hop-pdf.aux -test -e hop-pdf.aux && mv hop-pdf.aux hop.aux -bibtex packedindex - -Output written on repfind.pdf (4 pages, 110921 bytes). -Transcript written on repfind.log. -test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)pdflatex hop.tex -pdflatex repfind.tex +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.defmv ltrharvest.aux ltrharvest-pdf.aux +mv readjoiner.aux readjoiner-pdf.aux +# file output/gt-suffixerator--dna--pl--tis--suf--lcp--v--parts-4--db-read1.fna-read2.fna--indexname-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-nonunique--minmersize-10--maxmersize-20--esa-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-relative--minmersize-10--maxmersize-20--esa-reads.out already exists +# file output/gt-tallymer-occratio--output-unique-nonunique--mersizes-10-13-17--esa-reads.out already exists +# file output/gt-tallymer-mkindex--mersize-19--minocc-40--esa-reads.out already exists +# file output/gt-tallymer-mkindex--mersize-19--minocc-4--indexname-tyr-reads--counts--pl--esa-reads.out already exists +# file output/gt-tallymer-search--output-qseqnum-qpos-counts-sequence--tyr-tyr-reads--q-U89959.fna.out already exists +)diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./readjoiner.aux)mv uniquesub.aux uniquesub-pdf.aux -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux -bibtex uniquesub +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)diff matstat-pdf.bbl matstat.bbl || mv matstat.bbl matstat-pdf.bbl && rm -f matstat.bbl +test -e readjoiner-pdf.aux && mv readjoiner-pdf.aux readjoiner.aux +)mv uniquesub.aux uniquesub-pdf.aux +mv matstat.aux matstat-pdf.aux -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.mapThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -entering extended mode -(./ltrdigest.tex -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.stytest -e readjoiner-pdf.bbl && mv readjoiner-pdf.bbl readjoiner.bbl +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) The top-level auxiliary file: packedindex.aux The style file: unsrt.bst Database file #1: gtmanuals.bib -test -e packedindex-pdf.bbl || touch packedindex-pdf.bbl -entering extended mode -(./ltrharvest.texThis is BibTeX, Version 0.99d (TeX Live 2023/Debian) -The top-level auxiliary file: uniquesub.aux -I found no \bibdata command---while reading file uniquesub.aux -I found no \bibstyle command---while reading file uniquesub.aux +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: mgth.aux +I found no \bibdata command---while reading file mgth.aux +I found no \bibstyle command---while reading file mgth.aux (There were 2 error messages) +make[3]: [Makefile:36: mgth-pdf.bbl] Error 2 (ignored) +test -e mgth-pdf.bbl || touch mgth-pdf.bbl +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: repfind.aux +I found no \citation commands---while reading file repfind.aux +I found no \bibdata command---while reading file repfind.aux +I found no \bibstyle command---while reading file repfind.aux +(There were 3 error messages) +) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstlang1.stytest -e packedindex-pdf.bbl || touch packedindex-pdf.bbl +make[3]: [Makefile:34: repfind-pdf.bbl] Error 2 (ignored) +test -e repfind-pdf.bbl || touch repfind-pdf.bbl +)pdflatex readjoiner.tex +diff mgth-pdf.bbl mgth.bbl || mv mgth.bbl mgth-pdf.bbl && rm -f mgth.bbl -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.stydiff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl -make[3]: [Makefile:35: uniquesub-pdf.bbl] Error 2 (ignored) -test -e uniquesub-pdf.bbl || touch uniquesub-pdf.bbl +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defdiff packedindex-pdf.bbl packedindex.bbl || mv packedindex.bbl packedindex-pdf.bbl && rm -f packedindex.bbl +)diff repfind-pdf.bbl repfind.bbl || mv repfind.bbl repfind-pdf.bbl && rm -f repfind.bbl -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls0a1,21 +No file genomediff.aux. +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkiimv mgth.aux mgth-pdf.aux +0a1,21 > \begin{thebibliography}{1} > > \bibitem{oai:CiteSeerPSU:481302} @@ -8759,238 +8593,407 @@ > \newblock \url{git://genometools.org/gttestdata.git}. > > \end{thebibliography} -diff uniquesub-pdf.bbl uniquesub.bbl || mv uniquesub.bbl uniquesub-pdf.bbl && rm -f uniquesub.bbl - -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stymv uniquesub.aux uniquesub-pdf.aux -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))mv packedindex.aux packedindex-pdf.aux +[Loading MPS to PDF converter (version 2006.09.02).] +)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.maptest -e hop-pdf.aux && mv hop-pdf.aux hop.aux +mv packedindex.aux packedindex-pdf.aux +mv repfind.aux repfind-pdf.aux +test -e hop-pdf.bbl && mv hop-pdf.bbl hop.bbl +pdflatex hop.tex +test -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +bibtex ltrharvest +test -e ltrdigest-pdf.aux && mv ltrdigest-pdf.aux ltrdigest.aux +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... test -e uniquesub-pdf.aux && mv uniquesub-pdf.aux uniquesub.aux -)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) +test -e ltrdigest-pdf.bbl && mv ltrdigest-pdf.bbl ltrdigest.bbl +test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl +This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. +pdflatex ltrdigest.tex +pdflatex uniquesub.tex +test -e matstat-pdf.aux && mv matstat-pdf.aux matstat.aux +test -e mgth-pdf.aux && mv mgth-pdf.aux mgth.aux +test -e matstat-pdf.bbl && mv matstat-pdf.bbl matstat.bbl +test -e mgth-pdf.bbl && mv mgth-pdf.bbl mgth.bbl +pdflatex matstat.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +pdflatex mgth.tex test -e packedindex-pdf.aux && mv packedindex-pdf.aux packedindex.aux +This is BibTeX, Version 0.99d (TeX Live 2023/Debian) +The top-level auxiliary file: ltrharvest.aux +I found no \bibdata command---while reading file ltrharvest.aux +I found no \bibstyle command---while reading file ltrharvest.aux +(There were 2 error messages) +test -e repfind-pdf.aux && mv repfind-pdf.aux repfind.aux +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +make[3]: [Makefile:33: ltrharvest-pdf.bbl] Error 2 (ignored) +test -e ltrharvest-pdf.bbl || touch ltrharvest-pdf.bbl This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -test -e uniquesub-pdf.bbl && mv uniquesub-pdf.bbl uniquesub.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.stytest -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl - -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)pdflatex uniquesub.tex +test -e packedindex-pdf.bbl && mv packedindex-pdf.bbl packedindex.bbl +test -e repfind-pdf.bbl && mv repfind-pdf.bbl repfind.bbl +diff ltrharvest-pdf.bbl ltrharvest.bbl || mv ltrharvest.bbl ltrharvest-pdf.bbl && rm -f ltrharvest.bbl +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... pdflatex packedindex.tex +pdflatex repfind.tex +faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +mv ltrharvest.aux ltrharvest-pdf.aux +pdflatex tallymer-tmp +entering extended mode +(./readjoiner.tex +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.styThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)}]This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrdigest.aux)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrharvest.aux)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. +LaTeX Warning: Citation `HAU:DOM:WIE:2008' on page 1 undefined on input line 90 +. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': -[2 -Underfull \hbox (badness 10000) in paragraph at lines 47--47 -[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] -LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. +LaTeX Warning: Citation `HAU:PFA:DOM:WIE:2009' on page 1 undefined on input lin +e 90. -[3] -Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': -[4] [5]}entering extended mode -(./matstat.tex{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc} [6] + +LaTeX Warning: Citation `HAU:REE:PFA:2011' on page 1 undefined on input line 90 +. + + +LaTeX Warning: Citation `genometools' on page 1 undefined on input line 98. + +(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd)entering extended mode +(./hop.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) [7] -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 -[] - -Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 -[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru -n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [1) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty]) [8] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [9 -Underfull \hbox (badness 4132) in paragraph at lines 185--188 -[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2]] -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) (./tallymer-tmp.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -LaTeX Warning: There were undefined references. +LaTeX Warning: Reference `tab:gdopts' on page 2 undefined on input line 165. +(/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) (./optionman.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) [2] +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. +LaTeX Warning: Reference `code:lua' on page 3 undefined on input line 241. - ) -(see the transcript file for additional information) [3] -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty< -/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>) -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [6 +[3 +(./readjoiner.aux)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapentering extended mode +(./ltrdigest.tex (/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty] [7] (./readjoiner.aux) ) -(see the transcript file for additional information))) LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -Output written on readjoiner.pdf (8 pages, 115387 bytes). -Transcript written on readjoiner.log. - -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (./optionman.sty))) [4] (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(./matstat.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stypdflatex readjoiner.tex - +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./hop.aux) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +Overfull \hbox (35.00766pt too wide) in paragraph at lines 324--325 +[][][][][][][][][][][][][][][][][][][][][][][][] +No file genomediff.bbl. +[5] (./genomediff.aux) +kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tctt1200 + *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)entering extended mode -(./repfind.texfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map) +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)entering extended mode +(./matstat.tex +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)entering extended mode +(./repfind.tex +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.styentering extended mode +(./mgth.tex +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) (./optionman.sty -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map)entering extended mode -(./uniquesub.tex) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))entering extended mode +(./tallymer-tmp.tex) LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)))entering extended mode +(./uniquesub.tex (./optionman.sty) +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(./ltrdigest.aux) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +Underfull \hbox (badness 10000) in paragraph at lines 47--47 +[]$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)entering extended mode +(./packedindex.tex +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)) +(./repfind.aux) +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) (./optionman.sty)) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(./matstat.aux) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty])))) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty [1)] +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 +[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir +ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq + +Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 +[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ +reads.fastq r_reads.fastq[] +[2] +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)] (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 +\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ +ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - +outprefix +[3] +Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 +[] + +Overfull \hbox (19.25665pt too wide) in paragraph at lines 80--83 +[]\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru +n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))) [4] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (./optionman.sty)) [1 +(./uniquesub.aux) (./hop.aux) ) +(see the transcript file for additional information) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd +(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)) +Underfull \hbox (badness 4132) in paragraph at lines 185--188 +[]\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved +[2)] +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [3) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map] (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)))) +Output written on hop.pdf (5 pages, 69777 bytes). +Transcript written on hop.log. + [4 +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty]pdflatex hop.tex + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [5]) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [6 +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty] [7] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (./readjoiner.aux)) ) +(see the transcript file for additional information)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]) +(./packedindex.aux) Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd))}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}]) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 106. -[1 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)]) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltxThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -))) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +[1] +Output written on readjoiner.pdf (8 pages, 115387 bytes). +Transcript written on readjoiner.log. + +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. @@ -9000,15 +9003,9 @@ LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -[2) -[1 -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty (./optionman.sty)]) [3] -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty [4)] -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)] [2 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty +[2] [3pdflatex readjoiner.tex +] [4}]{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] Overfull \hbox (18.22491pt too wide) in paragraph at lines 283--291 \OT1/ptm/m/n/12 trans-po-son it-self (\OT1/pcr/m/n/12 LTR[]retrotransposon \OT1 /ptm/m/n/12 type) and the pre-dicted LTRs (\OT1/pcr/m/n/12 long[]terminal[]repe @@ -9016,47 +9013,30 @@ Underfull \hbox (badness 10000) in paragraph at lines 283--291 -[5)]) -(./mgth.aux) [3 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty]) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [6] [4 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))] -(./hop.auxThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) +[5] [2This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [5 -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii) -(./repfind.aux)] [7 [6] -[Loading MPS to PDF converter (version 2006.09.02).] -)] -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.styentering extended mode -(./packedindex.tex -Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] +] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [6] +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . -Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 -[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi -nner pred-inner-chr02.fsa[] -[7 -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg) [8] -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls])) -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd [1){/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map) +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl +[3 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omspcr.fd)] +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, +[4] (./repfind.aux)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + ) +(see the transcript file for additional information) [8 Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -9069,242 +9049,155 @@ Overfull \hbox (24.62292pt too wide) in paragraph at lines 577--587 \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas -[9 -Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 -[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR -) l(rLTR) sim(LTRs) seq-nr[] - -Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 -[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - -mat 2 -mis -2 -ins -3 -[8] [1]) -[1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map [10] (./ltrdigest.aux) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) ) -(see the transcript file for additional information) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty (./optionman.sty [10]] (./ltrdigest.aux) ) +(see the transcript file for additional information)<}{/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmex10.pfb/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}>] -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> -(./uniquesub.aux)> -<]/usr/share/texlive/texmf-dist/fonts +/type1/urw/times/utmb8a.pfb>< ) +(see the transcript file for additional information)/usr/share/texlive/texmf-d +ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>pdflatex repfind.tex +< Output written on ltrdigest.pdf (11 pages, 197786 bytes). Transcript written on ltrdigest.log. ->) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Output written on ltrharvest.pdf (13 pages, 170263 bytes). -Transcript written on ltrharvest.log. +/usr/share/texlive/texmf-dis +t/fonts/type1/urw/times/utmri8a.pfb>faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +pdflatex ltrdigest.tex +}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) +Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': +[2 +Output written on matstat.pdf (2 pages, 100165 bytes). +Transcript written on matstat.log. faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.mappdflatex ltrharvest.tex +]pdflatex matstat.tex -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') (./optionman.sty)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}]entering extended mode -(./tallymer-tmp.tex +LaTeX Warning: Reference `Examples' on page 3 undefined on input line 194. + +[3] +Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': +[4]entering extended mode +(./hop.tex}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo [5)]]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +)} +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 \OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2 -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def] (./matstat.aux)) ) +[2 [6 +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}]]] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [3 +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) [7)] (./uniquesub.aux) ) (see the transcript file for additional information) [8] -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -Output written on matstat.pdf (2 pages, 100165 bytes). -Transcript written on matstat.log. +LaTeX Warning: There were undefined references. -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))]] -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) [2 -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)pdflatex matstat.tex -] [1 (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}]] -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 -[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n -/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f -ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . -Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 -[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna - -suf -tis -lcp -ssp -pl -[3] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 -[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir -ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq +LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. -Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 -[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ -reads.fastq r_reads.fastq[] -[2 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)] -Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 -[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che -r, C., Stoye, J., Giegerich, -[4] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (./repfind.aux) ) -(see the transcript file for additional information)] -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./hop.aux -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty))> -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +ist/fonts/type1/public/amsfonts/cm/cmex10.pfb>>><]/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrb8a.pfb>>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb> +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)>]This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 []\OT1/ptm/m/n/12 . If this op- -[3] -Output written on repfind.pdf (4 pages, 110921 bytes). -Transcript written on repfind.log. - -Output written on hop.pdf (5 pages, 69777 bytes). -Transcript written on hop.log. +[3 +Output written on tallymer-tmp.pdf (9 pages, 149385 bytes). +Transcript written on tallymer-tmp.log. +]pdflatex tallymer-tmp -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)pdflatex hop.tex - (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defmv repfind.aux repfind-pdf.aux -)) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg))test -e repfind.bbl && mv repfind.bbl repfind-pdf.bbl - [4 -(./tallymer-tmp.aux))]}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +Output written on uniquesub.pdf (3 pages, 105238 bytes). +Transcript written on uniquesub.log. + (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd)pdflatex uniquesub.tex + [4] Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 [] -[5 -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -)] (./optionman.sty]) +[5]}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 []\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| @@ -9336,63 +9229,8 @@ Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 []\OT1/ptm/m/n/12 - -[6] [7] (./mgth.aux) ) -(see the transcript file for additional information) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)<]/usr/share/texlive/texmf-dist/fonts/type1/pub -lic/amsfonts/cm/cmr12.pfb (./uniquesub.aux)> -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def>>{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map ->>>entering extended mode -(./ltrdigest.tex -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -Output written on mgth.pdf (8 pages, 140111 bytes). -Transcript written on mgth.log. - -Output written on uniquesub.pdf (3 pages, 105238 bytes). -Transcript written on uniquesub.log. - -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stypdflatex mgth.tex -pdflatex uniquesub.tex - -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) - restricted \write18 enabled. -)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}] +[6]] [7] +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty LaTeX Warning: Citation `oai:CiteSeerPSU:481302' on page 1 undefined on input l ine 51. @@ -9405,26 +9243,50 @@ LaTeX Warning: Citation `genometools' on page 1 undefined on input line 56. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - [1]) [2 -(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) + (./mgth.aux) ) +(see the transcript file for additional information) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) + +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) [2 +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def] +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty) +Output written on mgth.pdf (8 pages, 140111 bytes). +Transcript written on mgth.log. + +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(./hop.aux) Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 \OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ 12 prefix.suf (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) [3]This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.stypdflatex mgth.tex + +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) [3]This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty [4]./findemptyoutfiles.sh -entering extended mode -(./ltrharvest.tex -LaTeX2e <2023-11-01> patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map [4faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... +]) LaTeX Warning: Citation `gttestdata' on page 5 undefined on input line 432. @@ -9434,9 +9296,11 @@ /12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ m/n/12 has been copied/linked [5] -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (./packedindex.bbl)) [6] (./packedindex.aux) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty (./packedindex.bbl)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) [6] (./packedindex.aux) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + LaTeX Warning: There were undefined references. @@ -9447,70 +9311,200 @@ (see the transcript file for additional information)))) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) +.pfb> +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls)) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo> +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.styentering extended mode +(./matstat.tex (./optionman.styThis is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. - -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./ltrdigest.aux)) +) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty<)/usr/shar +e/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>entering extended mode +(./tallymer-tmp.tex +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) +(./readjoiner.aux) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) Output written on packedindex.pdf (7 pages, 171021 bytes). Transcript written on packedindex.log. +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))pdflatex packedindex.tex + [1 +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)pdflatex packedindex.tex +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(./tallymer-tmp.aux)) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + (./optionman.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./optionman.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd))) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(./repfind.aux)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)] [1 +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty){/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def (./optionman.sty) [1 [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map) +(./ltrdigest.aux)] +Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 +[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir +ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq +Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 +[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ +reads.fastq r_reads.fastq[] +[2] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 +\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ +ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - +outprefix +[3)] +(./matstat.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd./execcommand.pl tagerator.tex > tagerator-tmp.tex -) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Underfull \hbox (badness 10000) in paragraph at lines 47--47 []$\OT1/pcr/m/n/14.4 http : / / nar . oxfordjournals . org / cgi / content / -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc} -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.styfaketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... -] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd)entering extended mode -(./matstat.tex +[1entering extended mode +(./uniquesub.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/base/article.clsentering extended mode +(./mgth.tex [4{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map] Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': -[2)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg]) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)# file output/gt-tagerator--q-Q1.gz--maxocc-10--pck-pck-human.out already exists +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo (./hop.aux)) ) +(see the transcript file for additional information) patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls>) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) +Output written on hop.pdf (5 pages, 69777 bytes). +Transcript written on hop.log. + [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapmv hop.aux hop-pdf.aux +test -e hop.bbl && mv hop.bbl hop-pdf.bbl +) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)./findemptyoutfiles.sh +) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty (./optionman.sty)] Overfull \hbox (6.12744pt too wide) in paragraph at lines 65--75 [] @@ -9518,93 +9512,116 @@ []\OT1/ptm/m/n/12 The \OT1/ptm/m/it/12 Read-joiner \OT1/ptm/m/n/12 tools are ru n us-ing the fol-low-ing syn-tax: \OT1/pcr/m/n/12 gt readjoiner \OT1/ptm/m/n/12 , -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - -Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 -[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads -.prj': -[4] [1 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def [5] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) [1] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) +(./uniquesub.aux) (./optionman.sty Underfull \hbox (badness 4132) in paragraph at lines 185--188 []\OT1/ptm/m/n/12 a single-end li-brary plus an in-ter-leaved -[2)] -(./ltrharvest.aux)) [6 [3] -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty]) -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty [4) [7]]entering extended mode -(./hop.tex -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) [5 +[2]) [3 +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty [4] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map [5)] +(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) [6] [7] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (./readjoiner.aux) +(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) ) +(see the transcript file for additional information) patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)] +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls>] +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1phv.fd) +(./mgth.aux +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) +Overfull \hbox (49.67761pt too wide) in paragraph at lines 170--170 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': +[2))]] [3] *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)) [9 [6 [1]{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map] (./tallymer-tmp.aux) [7] ) -(see the transcript file for additional information) ) -(see the transcript file for additional information)<>>>> -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty>< -/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb>< -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg/usr/sha -re/texlive/texmf-dist/fonts/type1/urw/times/utmr8a.pfb)> -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -Output written on readjoiner.pdf (8 pages, 115387 bytes). -Transcript written on readjoiner.log. - -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.defmv readjoiner.aux readjoiner-pdf.aux -)test -e readjoiner.bbl && mv readjoiner.bbl readjoiner-pdf.bbl - -(./matstat.aux)}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [2 +[Loading MPS to PDF converter (version 2006.09.02).] +) +Overfull \hbox (49.67761pt too wide) in paragraph at lines 257--257 +[]\OT1/pcr/m/n/12 gt tallymer occratio: error: fopen(): cannot open file 'reads +.prj': +[4]}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd){/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty Overfull \hbox (12.44974pt too wide) in paragraph at lines 52--56 \OT1/ptm/m/n/12 se-quence fea-tures of LTR retro-trans-posons in pre-dicted can -di-dates, like those re-ported by\OT1/ptm/m/it/12 LTRharvest \OT1/ptm/m/n/12 [ []]. -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd./execcommand.pl tagerator.tex > tagerator-tmp.tex +)) +(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg +Overfull \hbox (72.74506pt too wide) in paragraph at lines 126--129 +[]\OT1/ptm/m/n/12 Suppose the in-put se-quence $\OML/cmm/m/it/12 S \OT1/cmr/m/n +/12 = \OML/cmm/m/it/12 gagctcgagcgctgct$ \OT1/ptm/m/n/12 is con-tained in the f +ile \OT1/pcr/m/n/12 Repfind-example.fna\OT1/ptm/m/n/12 . + +Overfull \hbox (91.74632pt too wide) in paragraph at lines 130--130 +[]\OT1/pcr/m/n/10 gt suffixerator -db repfinf-sample.seq -indexname repidx -dna + -suf -tis -lcp -ssp -pl +[3 +Output written on readjoiner.pdf (8 pages, 115387 bytes). +Transcript written on readjoiner.log. +) [5]]) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.stymv readjoiner.aux readjoiner-pdf.aux + +Overfull \hbox (5.17455pt too wide) in paragraph at lines 163--166 +[]\OT1/ptm/m/n/12 Kurtz, S., Choud-huri, J. V., Ohle-busch, E., Schleier-ma-che +r, C., Stoye, J., Giegerich, +[4] (./repfind.aux) ) +(see the transcript file for additional information) patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo +[1>]{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.maptest -e ltrharvest-pdf.aux && mv ltrharvest-pdf.aux ltrharvest.aux +) [8]pdflatex tagerator-tmp +}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 120. @@ -9614,10 +9631,19 @@ LaTeX Warning: Characters dropped after `\end{verbatim}' on input line 134. -[2)] [3] [4) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty]) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty +[2 [9test -e ltrharvest-pdf.bbl && mv ltrharvest-pdf.bbl ltrharvest.bbl +] (./tallymer-tmp.aux)]] [3] [4 ) +(see the transcript file for additional information) patch level 1 -L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [7] -Document Class: article 2023/05/17 v1.4n Standard LaTeX document class -(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) [8] -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +[5 ) +(see the transcript file for additional information)< +/usr/share/texlive/texmf-dist/fonts/type1/urw/courier/ucrr8a.pfb +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.stymv repfind.aux repfind-pdf.aux +> [6>])> [7] +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) [8] +(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty +Excluding comment 'comment')faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + (./optionman.sty Overfull \hbox (34.70291pt too wide) in paragraph at lines 564--565 []\OT1/pcr/m/n/12 gt suffixerator -tis -des -dna -ssp -db genome.fas -indexname genome.fas @@ -9656,147 +9692,267 @@ \OT1/pcr/m/n/12 -hmms HMM*.hmm -outfileprefix mygenome-ltrs ltrs[]sorted.gff3 g enome.fas [9 -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty] -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) [10] (./ltrdigest.aux) ) +Output written on matstat.pdf (2 pages, 100165 bytes). +Transcript written on matstat.log. +)] [10] (./ltrdigest.aux) ) (see the transcript file for additional information) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)mv matstat.aux matstat-pdf.aux +test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl +))mv tallymer-tmp.pdf tallymer.pdf + +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)< -/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb>) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty)) -(./hop.aux)) +s/utmbi8a.pfb>< +/usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmri8a.pfb> +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- +dist/fonts/enc/dvips/base/8r.enc}] +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 +\OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t +ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it +/12 Genome- +[1] Output written on ltrdigest.pdf (11 pages, 197786 bytes). Transcript written on ltrdigest.log. -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)))mv ltrdigest.aux ltrdigest-pdf.aux +Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 +[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te +d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA +STA +[2]}mv ltrdigest.aux ltrdigest-pdf.aux -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty)test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl +Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 +[]\OT1/ptm/m/n/12 . If this op- +[3{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}]test -e ltrdigest.bbl && mv ltrdigest.bbl ltrdigest-pdf.bbl +] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omlptm.fd) [4] +Overfull \hbox (13.12135pt too wide) in paragraph at lines 439--439 +[]\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac +catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty)entering extended mode -(./packedindex.tex -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +Overfull \hbox (7.99995pt too wide) in paragraph at lines 429--443 +[] +[5]This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. + +Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 +[]\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac +catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| + +Overfull \hbox (12.18396pt too wide) in paragraph at lines 456--456 +[]\OT1/ptm/m/n/10.95 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRD +LEDYIRATA...| + +Overfull \hbox (7.99995pt too wide) in paragraph at lines 444--468 +[][] + +Overfull \hbox (12.88672pt too wide) in paragraph at lines 470--472 +[]\OT1/ptm/m/n/12 Content:| + +Overfull \hbox (1.15051pt too wide) in paragraph at lines 478--478 +[][]| + +Overfull \hbox (1.15051pt too wide) in paragraph at lines 480--480 +[][]| + +Overfull \hbox (1.15051pt too wide) in paragraph at lines 482--482 +[][]| + +Overfull \hbox (38.49402pt too wide) in paragraph at lines 504--506 +[]\OT1/ptm/m/n/12 Content:| + +Overfull \hbox (1.15051pt too wide) in paragraph at lines 506--506 +[]\OT1/ptm/m/n/12 - + +Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 +[]\OT1/ptm/m/n/12 - +[6 +Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 +\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu +b / current _ fasta / homo _ sapiens _ 47 _ 36i / +[2] [7] (./mgth.aux)] ) +(see the transcript file for additional information)>> +>> +Output written on mgth.pdf (8 pages, 140111 bytes). +Transcript written on mgth.log. +mv mgth.aux mgth-pdf.aux +test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl + +Output written on uniquesub.pdf (3 pages, 105238 bytes). +Transcript written on uniquesub.log. +mv uniquesub.aux uniquesub-pdf.aux +test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl +}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1]entering extended mode +(./tagerator-tmp.tex [2 LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls] Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)) -(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)) -(./uniquesub.aux) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty) -(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (./optionman.sty) -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.styentering extended mode -(./tagerator-tmp.tex -(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 +\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- +tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ +12 prefix.suf +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) [3]) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty [4] +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 +[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n +/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ +m/n/12 has been copied/linked +[5] +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.styentering extended mode +(./ltrharvest.tex (./packedindex.bbl) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> -(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls -(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls) [6] (./packedindex.aux) ) +(see the transcript file for additional information)) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty))) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) -Overfull \hbox (8.18253pt too wide) in paragraph at lines 122--126 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2 -(/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)]) (./matstat.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd ) -(see the transcript file for additional information)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) -(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def -(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty))] -(./mgth.aux) [2) -(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty)) -Output written on matstat.pdf (2 pages, 100165 bytes). -Transcript written on matstat.log. - [3 -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)] -(/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty -Excluding comment 'comment') (./optionman.sty)mv matstat.aux matstat-pdf.aux +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +Output written on packedindex.pdf (7 pages, 170398 bytes). +Transcript written on packedindex.log. -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii (./optionman.sty) -[Loading MPS to PDF converter (version 2006.09.02).] -)test -e matstat.bbl && mv matstat.bbl matstat-pdf.bbl - [4] (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) [5 -(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)] -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) [6 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)] +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)mv packedindex.aux packedindex-pdf.aux + +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.stytest -e packedindex.bbl && mv packedindex.bbl packedindex-pdf.bbl +) No file tagerator-tmp.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -[1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd)mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 + +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./ltrharvest.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.mapThis is METAFONT, Version 2.71828182 (TeX Live 2023/Debian) (preloaded base=mf) + +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf + Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf + Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf + Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf + Ok [100] [109] [98] [99] [108]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf + Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] +[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] +[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] +[138] [139] [140}]{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc} [141] [142] [143] [144] [145]] [146] [147] [148] [149] +[150 [2] [151] [152] [153] [154] [155]] [156] [157] [158] [159] [160] [161] +[162] [163] [164] [3 [165] [166] [167] [168] [169]] [171] [172] [173] [4 [174]] +[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] +Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 +[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos +t 5 occurrences in the subject sequences[] +[5 [214] [246]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf] + Ok [48] [49 (./tagerator-tmp.aux]) [50] [51] [52 ) +(see the transcript file for additional information)] [54] [55{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc [57]) +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf [178] [179] +(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf)] [190]) ) ) ) +Font metrics written on tctt1200.tfm. +Output written on tctt1200.600gf (128 characters, 22920 bytes). +Transcript written on tctt1200.log. + +[1] [2] +Output written on tagerator-tmp.pdf (5 pages, 120786 bytes). +Transcript written on tagerator-tmp.log. + [3] [4pdflatex tagerator-tmp +] [5] [6] Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9804,8 +9960,7 @@ Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 []\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi nner pred-inner-chr02.fsa[] -[7 -(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def] +[7] Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR ) l(rLTR) sim(LTRs) seq-nr[] @@ -9817,10 +9972,7 @@ Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 []\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - mat 2 -mis -2 -ins -3 -[8 -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd))] -(./packedindex.aux) [1{/var/lib/texmf/fo -nts/map/pdftex/updmap/pdftex.map +[8] Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 []\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] @@ -9835,17 +9987,13 @@ Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 [][] -[11] [12mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tctt1200 -] (./ltrharvest.aux) ) -(see the transcript file for additional information)< -*geometry* driver: auto-detecting -*geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd/usr/share/texlive/texmf-d -ist/fonts/type1/public/amsfonts/cm/cmmi10.pfb)> [1faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... + @@ -9856,205 +10004,24 @@ i8a.pfb> Output written on ltrharvest.pdf (13 pages, 170263 bytes). Transcript written on ltrharvest.log. -mv ltrharvest.aux ltrharvest-pdf.aux -test -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl -}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}] [1] -Overfull \hbox (37.48308pt too wide) in paragraph at lines 132--140 -[]\OT1/ptm/m/n/12 It is usu-ally quite easy to pre-pare the map-ping as re-quir -ed. Say the reads to be cor-rected are \OT1/pcr/m/n/12 f[]reads.fastq - -Overfull \hbox (32.30313pt too wide) in paragraph at lines 146--146 -[]\OT1/pcr/m/n/10 > bwa sampe cognate.fas -f map.sam f_reads.sai r_reads.sai f_ -reads.fastq r_reads.fastq[] -[2] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)This is METAFONT, Version 2.71828182 (TeX Live 2023/Debian) (preloaded base=mf) -}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc} -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt1200.mf -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tctt.mf -Overfull \hbox (14.55139pt too wide) in paragraph at lines 208--213 -\OT1/ptm/m/n/12 The pre-fix added by HOP (in this case \OT1/pcr/m/n/12 hop\OT1/ -ptm/m/n/12 , which is the de-fault) can be changed us-ing the \OT1/pcr/m/n/12 - -outprefix -[3 -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf] - Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf] - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf - Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf - Ok [0] [1] [2] [3] [4] [4 [5]] [6] [7] [8] [9] (./hop.aux) [10] -Overfull \hbox (8.18253pt too wide) in paragraph at lines 129--133 -\OT1/ptm/m/n/12 loaded from $\OT1/pcr/m/n/12 ftp : / / ftp . ensembl . org / pu -b / current _ fasta / homo _ sapiens _ 47 _ 36i / -[2 [11] ) -(see the transcript file for additional information) [99] [108]) -(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf [3 [32] [87] ) -(see the transcript file for additional information)< [110]/usr/share/texlive/texmf-d -ist/fonts/type1/public/amsfonts/cm/cmmi12.pfb [126]> [127] [128] [133] [134] [137] [139] [143] [147] -[150] [154]mv hop.aux hop-pdf.aux - [159] [4 [160] [161]] -[162] [163] [164] [165] [166] -Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 -[]\OT1/pcr/m/n/8 # computing prefix matches with up to 1 differences and at mos -t 5 occurrences in the subject sequences[] -[5 [167] [168]] (./tagerator-tmp.aux [169]) [171] [172] ) -(see the transcript file for additional information) [181] [191] [214] [246]) [49] [56] [179] -Output written on uniquesub.pdf (3 pages, 105238 bytes). -Transcript written on uniquesub.log. - - Ok [188] ) ) ) -Font metrics written on tctt1200.tfm. -Output written on tctt1200.600gf (128 characters, 22920 bytes). -Transcript written on tctt1200.log. -test -e uniquesub.bbl && mv uniquesub.bbl uniquesub-pdf.bbl -}{/usr/share/texlive/texmf- -dist/fonts/enc/dvips/base/8r.enc} -Output written on tagerator-tmp.pdf (5 pages, 120786 bytes). -Transcript written on tagerator-tmp.log. -] -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd)pdflatex tagerator-tmp - -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)}{/usr/share/texlive/texmf-dist/fonts/enc/dvips -/base/8r.enc}]faketime: You appear to be running faketime within a libfaketime environment. Proceeding, but check for unexpected results... - (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) -Overfull \hbox (1.48183pt too wide) in paragraph at lines 97--108 -\OT1/ptm/m/it/12 Tools \OT1/ptm/m/n/12 (see [[]] for in-stal-la-tion in-struc-t -ions). There are two dif-fer-ent in-stal-la-tion op-tions for the \OT1/ptm/m/it -/12 Genome- -[1] -[1] [2] -Overfull \hbox (0.98593pt too wide) in paragraph at lines 115--125 -[]\OT1/pcr/m/n/10.95 BLAST-Filename \OT1/ptm/m/n/12 de-notes the XML for-mat-te -d BLAST-hit file, \OT1/pcr/m/n/10.95 Metagenome-Filename \OT1/ptm/m/n/12 the FA -STA -[2 -Overfull \hbox (5.0115pt too wide) in paragraph at lines 252--257 -\OT1/ptm/m/n/12 The \OT1/pcr/b/n/12 mkctxmap \OT1/ptm/m/n/12 sub-tool fa-cil-i- -tates late build-ing of a re-verse lookup ta-ble, it can use the \OT1/pcr/m/sl/ -12 prefix.suf -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd)] [3] [4 -Overfull \hbox (1.2452pt too wide) in paragraph at lines 256--257 -[]\OT1/ptm/m/n/12 . If this op- -[3]] -Overfull \hbox (37.00337pt too wide) in paragraph at lines 441--445 -[]\OT1/ptm/m/n/12 First com-pute the \OT1/ptm/m/it/12 packedin-dex \OT1/ptm/m/n -/12 in-dex file (this as-sumes \OT1/pcr/m/sl/12 chr01.19960731.fsa.gz \OT1/ptm/ -m/n/12 has been copied/linked -[5] (./packedindex.bbl) [6] (./packedindex.aux) ) -(see the transcript file for additional information)] -Overfull \hbox (13.12135pt too wide) in paragraph at lines 452--452 -[]\OT1/ptm/m/n/10.95 tataaaatagccaaatctgagcctaaaagcccttggatatccatgatttagaacgaac -catcccctcttattcaggagaagttttctgaactcttcaacatcctcga...| - -Overfull \hbox (12.18396pt too wide) in paragraph at lines 456--456 -[]\OT1/ptm/m/n/10.95 MLLREVTREERKNFYTNEWKVKDIPDFIVKTLELREFGFDHSGEGPSDRKNQYTDIRD -LEDYIRATA...| - -Overfull \hbox (7.99995pt too wide) in paragraph at lines 444--468 -[][] - -Overfull \hbox (12.88672pt too wide) in paragraph at lines 470--472 -[]\OT1/ptm/m/n/12 Content:| - -Overfull \hbox (1.15051pt too wide) in paragraph at lines 478--478 -[][]| - -Overfull \hbox (1.15051pt too wide) in paragraph at lines 480--480 -[][]| - -Overfull \hbox (1.15051pt too wide) in paragraph at lines 482--482 -[][]| - -Overfull \hbox (38.49402pt too wide) in paragraph at lines 504--506 -[]\OT1/ptm/m/n/12 Content:| - -Overfull \hbox (1.15051pt too wide) in paragraph at lines 506--506 -[]\OT1/ptm/m/n/12 - - -Overfull \hbox (1.15051pt too wide) in paragraph at lines 509--509 -[]\OT1/ptm/m/n/12 - -[6] [7] (./mgth.aux) ) -(see the transcript file for additional information) -Output written on packedindex.pdf (7 pages, 170398 bytes). -Transcript written on packedindex.log. - - -Output written on mgth.pdf (8 pages, 140111 bytes). -Transcript written on mgth.log. -mv mgth.aux mgth-pdf.aux -test -e mgth.bbl && mv mgth.bbl mgth-pdf.bbl -mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2023/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. - +This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) + restricted \write18 enabled. +entering extended mode +(./tagerator-tmp.tex +LaTeX2e <2023-11-01> patch level 1 +L3 programming layer <2024-01-22> +(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls +Document Class: article 2023/05/17 v1.4n Standard LaTeX document class +(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)mktexpk: /build/reproducible-path/genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2023/texmf-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk: successfully generated. +) +(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty +(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) +(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty +(/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) LaTeX Warning: There were undefined references. @@ -10066,8 +10033,22 @@ genometools-1.6.5+ds/debian/.debhelper/generated/_source/home/.texlive2023/texm f-var/fonts/pk/ljfour/jknappen/ec/tctt1200.600pk> kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200 -entering extended mode -(./tagerator-tmp.tex +) +(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) +(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) +(/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) +(./tagerator-tmp.aux) +*geometry* driver: auto-detecting +*geometry* detected driver: pdftex +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd)entering extended mode +(./ltrharvest.tex [1{/var/lib/texmf/fo +nts/map/pdftex/updmap/pdftex.map LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls @@ -10081,15 +10062,16 @@ (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) -(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) -(/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (./optionman.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty +(/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) +(/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) +(/usr/share/texlive/texmf-dist/tex/latex/tools/verbatim.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) -(./tagerator-tmp.aux) +(./ltrharvest.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) -(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/var/lib/texmf/fo +(/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf-dist/fonts/enc/dvips /base/8r.enc}] [2] [3] [4] Overfull \hbox (5.90344pt too wide) in paragraph at lines 265--265 @@ -10109,6 +10091,61 @@ Output written on tagerator-tmp.pdf (5 pages, 120786 bytes). Transcript written on tagerator-tmp.log. mv tagerator-tmp.pdf tagerator.pdf +}{/usr/share/texlive/texmf-dist/fonts/enc/dvips +/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) +[1] [2] [3] [4] [5] [6] +Overfull \hbox (38.30313pt too wide) in paragraph at lines 545--545 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (32.30313pt too wide) in paragraph at lines 581--581 +[]\OT1/pcr/m/n/10 # args=-index chr02.19970727.fsa -v -out pred-chr02.fsa -outi +nner pred-inner-chr02.fsa[] +[7] +Overfull \hbox (38.30313pt too wide) in paragraph at lines 605--605 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (38.30313pt too wide) in paragraph at lines 633--633 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) s(rLTR) e(rLTR +) l(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (8.30313pt too wide) in paragraph at lines 657--657 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chr02.19970727.fsa -seed 30 -xdrop 5 - +mat 2 -mis -2 -ins -3 +[8] +Overfull \hbox (266.30313pt too wide) in paragraph at lines 666--666 +[]\OT1/pcr/m/n/10 # s(ret) e(ret) l(ret) s(lLTR) e(lLTR) l(lLTR) TSD l(TSD) m(l +LTR) s(rLTR) e(rLTR) l(rLTR) TSD l(TSD) m(rLTR) sim(LTRs) seq-nr[] + +Overfull \hbox (14.30313pt too wide) in paragraph at lines 723--723 +[]\OT1/pcr/m/n/10 $ gt ltrharvest -index chrAll.19971001.fsa -seed 100 -minlenl +tr 100 -maxlenltr 1000 +[9] [10] +Underfull \hbox (badness 10000) in paragraph at lines 824--826 +[]\OT1/ptm/m/sc/12 GFF3\OT1/ptm/m/n/12 , tab de-lim-ited file for-mat for genom +e an-no-ta-tion. $\OT1/pcr/m/n/12 http : / / www . + +Overfull \hbox (12.44014pt too wide) in paragraph at lines 861--872 +[][] +[11] [12] (./ltrharvest.aux) ) +(see the transcript file for additional information) + +Output written on ltrharvest.pdf (13 pages, 170263 bytes). +Transcript written on ltrharvest.log. +mv ltrharvest.aux ltrharvest-pdf.aux +test -e ltrharvest.bbl && mv ltrharvest.bbl ltrharvest-pdf.bbl mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200 This is METAFONT, Version 2.71828182 (TeX Live 2023/Debian) (preloaded base=mf) @@ -10346,7 +10383,7 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds' bin/gt -test -seed=3564883871 +seed=3914643663 Lua serializer module...ok MD5 seqid module...ok PBS finder module...ok @@ -10437,7 +10474,7 @@ uint64hashtable...ok xdrop...ok cd testsuite; ./testsuite.rb -keywords 'gt_sketch and not gt_python and not gt_ruby' -seed=1485891674 +seed=1330076333 1381: gt sketch short test : ok 1382: gt sketch short test (stdin) : ok 1383: gt sketch short test (unknown output format) : ok @@ -10469,7 +10506,7 @@ make[1]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds' dh_auto_install -- installmanpages useshared=yes \ x32=no 64bit=no errorcheck=no prefix=/build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr - make -j22 install DESTDIR=/build/reproducible-path/genometools-1.6.5\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=no errorcheck=no prefix=/build/reproducible-path/genometools-1.6.5\+ds/debian/tmp/usr + make -j10 install DESTDIR=/build/reproducible-path/genometools-1.6.5\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" installmanpages useshared=yes x32=no 64bit=no errorcheck=no prefix=/build/reproducible-path/genometools-1.6.5\+ds/debian/tmp/usr make[2]: Entering directory '/build/reproducible-path/genometools-1.6.5+ds' [link libgenometools.so] bin/gt -createman /tmp/gtmanpages @@ -10484,7 +10521,7 @@ test -d ./doc/manpages || mkdir -p ./doc/manpages rm -f ./doc/manpages/* scripts/create_manpages /tmp/gtmanpages ./doc/manpages -...test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin +......test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin cp bin/gt /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin strip /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin/gt mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/genometools @@ -10494,7 +10531,7 @@ cp src/core/*_api.h /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/core test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/extended \ || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/extended -cp src/extended/*_api.h /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/extended +.cp src/extended/*_api.h /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/extended test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/annotationsketch \ || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools/annotationsketch cp src/annotationsketch/*_api.h \ @@ -10506,7 +10543,7 @@ cp src/genometools.h /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/include/genometools test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib cp lib/libgenometools.a /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib -.cp lib/libgenometools.so.0 /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib +cp lib/libgenometools.so.0 /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib ln -fs /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib/libgenometools.so.0 /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib/libgenometools.so [build config script install] sed -e 's!@CC@!cc!' -e 's!@CFLAGS@!-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \ @@ -10514,11 +10551,11 @@ -e 's!@CXX@!g++!' -e 's!@CXXFLAGS@!-g -O2 -ffile-prefix-map=/build/reproducible-path/genometools-1.6.5+ds=. -fstack-protector-strong -Wformat -Werror=format-security!' \ -e 's!@LDFLAGS@!-L/build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/lib -Wl,-z,relro -Wl,-z,now -L/usr/local/lib!' \ -e 's!@LIBS@! -lm -lbz2 -lz -lexpat -llua5.1 -llua5.1-lpeg -llua5.1 -llua5.1-md5 -llua5.1 -llua5.1-filesystem -llua5.1 -llua5.1-des56 -llua5.1 -lbam -ltre -Wl,-z,relro -lm -lpthread -ldl -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lcairo -lpthread -lsqlite3!' -e "s!@VERSION@!`cat VERSION`!" \ - -e 's!@BUILDSTAMP@!"2025-06-01 02:05:58"!' \ + -e 's!@BUILDSTAMP@!"2024-04-29 22:02:26"!' \ -e 's!@SYSTEM@!Linux!' /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin/genometools-config chmod 755 /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/bin/genometools-config -.......................................................................................... +....................................................................................... test ! -d ./doc/manpages || \ ((test -d /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1 || mkdir -p /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1) \ && cp ./doc/manpages/* /build/reproducible-path/genometools-1.6.5+ds/debian/tmp/usr/share/man/man1) @@ -10614,11 +10651,11 @@ dh_builddeb dpkg-deb: building package 'libgenometools0t64-dbgsym' in '../libgenometools0t64-dbgsym_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'python3-genometools' in '../python3-genometools_1.6.5+ds-2.2_all.deb'. -dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.6.5+ds-2.2_all.deb'. -dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.5+ds-2.2_i386.deb'. +dpkg-deb: building package 'genometools' in '../genometools_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'libgenometools0t64' in '../libgenometools0t64_1.6.5+ds-2.2_i386.deb'. dpkg-deb: building package 'genometools-common' in '../genometools-common_1.6.5+ds-2.2_all.deb'. -dpkg-deb: building package 'genometools' in '../genometools_1.6.5+ds-2.2_i386.deb'. +dpkg-deb: building package 'libgenometools0-dev' in '../libgenometools0-dev_1.6.5+ds-2.2_i386.deb'. +dpkg-deb: building package 'genometools-doc' in '../genometools-doc_1.6.5+ds-2.2_all.deb'. dpkg-genbuildinfo --build=binary -O../genometools_1.6.5+ds-2.2_i386.buildinfo dpkg-genchanges --build=binary -O../genometools_1.6.5+ds-2.2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -10626,12 +10663,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20936/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/128066 and its subdirectories -I: Current time: Sun Jun 1 02:09:18 -12 2025 -I: pbuilder-time-stamp: 1748786959 +I: removing directory /srv/workspace/pbuilder/20936 and its subdirectories +I: Current time: Mon Apr 29 22:06:08 +14 2024 +I: pbuilder-time-stamp: 1714377968