Diff of the two buildlogs:

--
--- b1/build.log	2024-04-04 07:02:27.989988427 +0000
+++ b2/build.log	2024-04-04 07:06:12.128428630 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Apr  3 18:59:55 -12 2024
-I: pbuilder-time-stamp: 1712213995
+I: Current time: Thu May  8 03:25:33 +14 2025
+I: pbuilder-time-stamp: 1746624333
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -26,54 +26,86 @@
 dpkg-source: info: unpacking kalign_3.4.0-1.debian.tar.xz
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/37480/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos16-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May  7 13:25 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='i386'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='i386'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+  BASH_VERSION='5.2.21(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=i386
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=i686
+  HOST_ARCH=i386
   IFS=' 	
   '
-  INVOCATION_ID='5d368dc225cb48b4ad5fe6465ecb7bbc'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
-  LD_PRELOAD='libeatmydata.so'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='37480'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=738441cb378f4f68a2aa322c130ede54
+  LANG=C
+  LANGUAGE=de_CH:de
+  LC_ALL=C
+  LD_LIBRARY_PATH=/usr/lib/libeatmydata
+  LD_PRELOAD=libeatmydata.so
+  MACHTYPE=i686-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=117385
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ucQfOKz1/pbuilderrc_0z7m --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ucQfOKz1/b1 --logfile b1/build.log kalign_3.4.0-1.dsc'
-  SUDO_GID='112'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://78.137.99.97:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ucQfOKz1/pbuilderrc_TJj0 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ucQfOKz1/b2 --logfile b2/build.log kalign_3.4.0-1.dsc'
+  SUDO_GID=112
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://85.184.249.68:3128
 I: uname -a
-  Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Apr  1 11:25 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/37480/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 May  6 17:46 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -162,7 +194,7 @@
 Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
 Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB]
 Get: 49 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.0-1 [458 kB]
-Fetched 36.9 MB in 1s (55.2 MB/s)
+Fetched 36.9 MB in 3s (13.2 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libproc2-0:i386.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19876 files and directories currently installed.)
@@ -373,7 +405,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../kalign_3.4.0-1_source.changes
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/kalign-3.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../kalign_3.4.0-1_source.changes
 dpkg-buildpackage: info: source package kalign
 dpkg-buildpackage: info: source version 1:3.4.0-1
 dpkg-buildpackage: info: source distribution unstable
@@ -424,7 +460,7 @@
 -- Compiler c flags          : -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2
 -- OpenMP version            : 4.5
 -- OpenMP flags              : -fopenmp
--- Configuring done (2.3s)
+-- Configuring done (12.1s)
 -- Generating done (0.1s)
 CMake Warning:
   Manually-specified variables were not used by the project:
@@ -438,7 +474,7 @@
 -- Build files have been written to: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu
 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0'
    dh_auto_build
-	cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1
 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu//CMakeFiles/progress.marks
@@ -446,80 +482,104 @@
 make[2]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/depend
 make  -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
 make  -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
 make  -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/depend
 make  -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/depend
 make  -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/depend
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/tldevel.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign_OBJ.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/alphabet_utest.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/bpm_utest.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/edist_utest.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/task_utest.dir/DependInfo.cmake "--color="
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f lib/CMakeFiles/tldevel.dir/build.make lib/CMakeFiles/tldevel.dir/build
-make  -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
+make  -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
 make  -f lib/CMakeFiles/bpm_utest.dir/build.make lib/CMakeFiles/bpm_utest.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f lib/CMakeFiles/alphabet_utest.dir/build.make lib/CMakeFiles/alphabet_utest.dir/build
+make  -f lib/CMakeFiles/kalign_OBJ.dir/build.make lib/CMakeFiles/kalign_OBJ.dir/build
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[  1%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
-[  2%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
-[  5%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
-[  5%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
-[  8%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
-[  8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-[  9%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 10%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+make  -f lib/CMakeFiles/edist_utest.dir/build.make lib/CMakeFiles/edist_utest.dir/build
+make  -f lib/CMakeFiles/task_utest.dir/build.make lib/CMakeFiles/task_utest.dir/build
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[  1%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
+[  2%] Building C object lib/CMakeFiles/tldevel.dir/src/tldevel.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tldevel.c.o -MF CMakeFiles/tldevel.dir/src/tldevel.c.o.d -o CMakeFiles/tldevel.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 12%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
+[  4%] Building C object lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o
+[  5%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlmisc.c.o -MF CMakeFiles/tldevel.dir/src/tlmisc.c.o.d -o CMakeFiles/tldevel.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
+[  6%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+[  8%] Building C object lib/CMakeFiles/tldevel.dir/src/tlrng.c.o
+[  9%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tldevel.c.o -MF CMakeFiles/bpm_utest.dir/src/tldevel.c.o.d -o CMakeFiles/bpm_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+[ 10%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
+[ 12%] Building C object lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/tlrng.c.o -MF CMakeFiles/tldevel.dir/src/tlrng.c.o.d -o CMakeFiles/tldevel.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 13%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
+[ 14%] Building C object lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
+[ 16%] Building C object lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 13%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
-[ 14%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -MF CMakeFiles/alphabet_utest.dir/src/tldevel.c.o.d -o CMakeFiles/alphabet_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 16%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
-[ 17%] Building C object lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tlrng.c.o -MF CMakeFiles/edist_utest.dir/src/tlrng.c.o.d -o CMakeFiles/edist_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -MF CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
+[ 17%] Building C object lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/tlrng.c.o -MF CMakeFiles/bpm_utest.dir/src/tlrng.c.o.d -o CMakeFiles/bpm_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-[ 18%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/tldevel.c.o -MF CMakeFiles/edist_utest.dir/src/tldevel.c.o.d -o CMakeFiles/edist_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+[ 18%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o
+[ 20%] Building C object lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o
+[ 21%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_EDIST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -MF CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o.d -o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
+[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/test.c.o -MF CMakeFiles/kalign_OBJ.dir/src/test.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/test.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
+[ 24%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
+[ 27%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
+[ 28%] Building C object lib/CMakeFiles/task_utest.dir/src/tldevel.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tldevel.c.o -MF CMakeFiles/task_utest.dir/src/tldevel.c.o.d -o CMakeFiles/task_utest.dir/src/tldevel.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tldevel.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
 /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c: In function 'main':
 /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c:58:15: warning: unused variable 'd2' [-Wunused-variable]
    58 |         float d2;
       |               ^~
-[ 20%] Building C object lib/CMakeFiles/task_utest.dir/src/tlrng.c.o
-[ 21%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/tlrng.c.o -MF CMakeFiles/task_utest.dir/src/tlrng.c.o.d -o CMakeFiles/task_utest.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlmisc.c
-[ 22%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -MF CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/tlrng.c
-[ 24%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
+[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
+[ 31%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
+[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
+[ 33%] Building C object lib/CMakeFiles/task_utest.dir/src/task.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DTASKWRITETEST -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/task_utest.dir/src/task.c.o -MF CMakeFiles/task_utest.dir/src/task.c.o.d -o CMakeFiles/task_utest.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
+[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
+[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
+[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
+[ 39%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
+[ 40%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
    94 |         fscanf( f_ptr, "%d", &n_tasks);
@@ -527,35 +587,16 @@
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
    99 |                 fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
       |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 25%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -MF CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 27%] Building C object lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -MF CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o.d -o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/esl_stopwatch.c
-[ 28%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_alloc.c
-[ 29%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_op.c
-[ 31%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_io.c
-[ 32%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_misc.c
-[ 33%] Building C object lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/alphabet.c.o -MF CMakeFiles/bpm_utest.dir/src/alphabet.c.o.d -o CMakeFiles/bpm_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-[ 35%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_check.c
-[ 36%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_cmp.c
-[ 37%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
-[ 39%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o
+[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -MF CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/msa_sort.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
-[ 40%] Building C object lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -MF CMakeFiles/bpm_utest.dir/src/bpm_test.c.o.d -o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm_test.c
-[ 41%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
+[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -MF CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-[ 43%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
 [ 44%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
+[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/task.c.o -MF CMakeFiles/kalign_OBJ.dir/src/task.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/task.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/task.c
+[ 47%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c: In function 'read_tasks':
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c:94:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
    94 |         fscanf( f_ptr, "%d", &n_tasks);
@@ -563,192 +604,192 @@
 /build/reproducible-path/kalign-3.4.0/lib/src/task.c:99:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
    99 |                 fscanf(f_ptr,"%d,%d,%d,%d,%d\n",&a->a,&a->b,&a->c,&a->p,&a->n);
       |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bisectingKmeans.c
-[ 45%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -MF CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/sequence_distance.c
-[ 47%] Linking C static library libtldevel.a
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
-[ 48%] Linking C executable edist_utest
-[ 50%] Linking C executable task_utest
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
-[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
+[ 48%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o
+[ 50%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
+[ 51%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -MF CMakeFiles/kalign_OBJ.dir/src/bpm.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/bpm.c
-[ 52%] Building C object lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest  -lm 
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest  -lm 
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP  -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -DUTEST_ALPHABET -Wall -Wextra -pedantic -MD -MT lib/CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -MF CMakeFiles/alphabet_utest.dir/src/alphabet.c.o.d -o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/alphabet.c
-/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
-/usr/bin/ranlib libtldevel.a
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 52%] Built target tldevel
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -MF CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/euclidean_dist.c
-[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -MF CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/pick_anchor.c
-[ 55%] Built target task_utest
-[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
+[ 52%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_wrap.c
-[ 56%] Built target edist_utest
-[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
-[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
+[ 54%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_param.c
+[ 55%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_run.c
-[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
+[ 56%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_mem.c
-[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
+[ 58%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_setup.c
-[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
+[ 59%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_controller.c
-[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
+[ 60%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqseq.c
-[ 66%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
+[ 62%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_seqprofile.c
-[ 67%] Linking C executable alphabet_utest
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
-[ 68%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
+[ 63%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -MF CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/aln_profileprofile.c
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest 
-[ 70%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
+[ 64%] Building C object lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -I/build/reproducible-path/kalign-3.4.0/lib/include -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -std=gnu11 -Wall -Wextra -pedantic -fopenmp -MD -MT lib/CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -MF CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o.d -o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o -c /build/reproducible-path/kalign-3.4.0/lib/src/weave_alignment.c
+[ 66%] Linking C static library libtldevel.a
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/tldevel.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/tldevel.dir/link.txt --verbose=1
+/usr/bin/ar qc libtldevel.a CMakeFiles/tldevel.dir/src/tldevel.c.o CMakeFiles/tldevel.dir/src/tlmisc.c.o CMakeFiles/tldevel.dir/src/tlrng.c.o CMakeFiles/tldevel.dir/src/esl_stopwatch.c.o
+/usr/bin/ranlib libtldevel.a
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 70%] Built target alphabet_utest
-[ 71%] Linking C executable bpm_utest
+[ 66%] Built target tldevel
+[ 67%] Linking C executable task_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/task_utest.dir/link.txt --verbose=1
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/task_utest.dir/src/tldevel.c.o CMakeFiles/task_utest.dir/src/tlrng.c.o CMakeFiles/task_utest.dir/src/task.c.o -o task_utest  -lm 
+[ 68%] Linking C executable bpm_utest
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpm_utest.dir/link.txt --verbose=1
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/bpm_utest.dir/src/tldevel.c.o CMakeFiles/bpm_utest.dir/src/tlrng.c.o CMakeFiles/bpm_utest.dir/src/esl_stopwatch.c.o CMakeFiles/bpm_utest.dir/src/alphabet.c.o CMakeFiles/bpm_utest.dir/src/bpm.c.o CMakeFiles/bpm_utest.dir/src/bpm_test.c.o -o bpm_utest  -lm 
+[ 70%] Linking C executable alphabet_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/alphabet_utest.dir/link.txt --verbose=1
+[ 70%] Built target task_utest
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/alphabet_utest.dir/src/tldevel.c.o CMakeFiles/alphabet_utest.dir/src/alphabet.c.o -o alphabet_utest 
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 71%] Built target bpm_utest
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 70%] Built target bpm_utest
+[ 71%] Linking C executable edist_utest
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/edist_utest.dir/link.txt --verbose=1
 [ 71%] Built target kalign_OBJ
 make  -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/depend
-make  -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
+[ 71%] Built target alphabet_utest
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign.dir/DependInfo.cmake "--color="
+make  -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/depend
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib/CMakeFiles/kalign_static.dir/DependInfo.cmake "--color="
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -fPIC -Wl,-z,relro -Wl,-z,now CMakeFiles/edist_utest.dir/src/tldevel.c.o CMakeFiles/edist_utest.dir/src/tlrng.c.o CMakeFiles/edist_utest.dir/src/esl_stopwatch.c.o CMakeFiles/edist_utest.dir/src/euclidean_dist.c.o -o edist_utest  -lm 
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f lib/CMakeFiles/kalign.dir/build.make lib/CMakeFiles/kalign.dir/build
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make  -f lib/CMakeFiles/kalign_static.dir/build.make lib/CMakeFiles/kalign_static.dir/build
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 [ 72%] Linking C static library libkalign.a
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign.dir/cmake_clean_target.cmake
 [ 74%] Linking C static library libkalign_static.a
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -P CMakeFiles/kalign_static.dir/cmake_clean_target.cmake
+[ 74%] Built target edist_utest
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign.dir/link.txt --verbose=1
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_static.dir/link.txt --verbose=1
 /usr/bin/ar qc libkalign.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
 /usr/bin/ar qc libkalign_static.a CMakeFiles/kalign_OBJ.dir/src/test.c.o CMakeFiles/kalign_OBJ.dir/src/tldevel.c.o CMakeFiles/kalign_OBJ.dir/src/tlmisc.c.o CMakeFiles/kalign_OBJ.dir/src/tlrng.c.o CMakeFiles/kalign_OBJ.dir/src/esl_stopwatch.c.o CMakeFiles/kalign_OBJ.dir/src/msa_alloc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_op.c.o CMakeFiles/kalign_OBJ.dir/src/msa_io.c.o CMakeFiles/kalign_OBJ.dir/src/msa_misc.c.o CMakeFiles/kalign_OBJ.dir/src/msa_check.c.o CMakeFiles/kalign_OBJ.dir/src/msa_cmp.c.o CMakeFiles/kalign_OBJ.dir/src/msa_sort.c.o CMakeFiles/kalign_OBJ.dir/src/alphabet.c.o CMakeFiles/kalign_OBJ.dir/src/task.c.o CMakeFiles/kalign_OBJ.dir/src/bisectingKmeans.c.o CMakeFiles/kalign_OBJ.dir/src/sequence_distance.c.o CMakeFiles/kalign_OBJ.dir/src/bpm.c.o CMakeFiles/kalign_OBJ.dir/src/euclidean_dist.c.o CMakeFiles/kalign_OBJ.dir/src/pick_anchor.c.o CMakeFiles/kalign_OBJ.dir/src/aln_wrap.c.o CMakeFiles/kalign_OBJ.dir/src/aln_param.c.o CMakeFiles/kalign_OBJ.dir/src/aln_run.c.o CMakeFiles/kalign_OBJ.dir/src/aln_mem.c.o CMakeFiles/kalign_OBJ.dir/src/aln_setup.c.o CMakeFiles/kalign_OBJ.dir/src/aln_controller.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqseq.c.o CMakeFiles/kalign_OBJ.dir/src/aln_seqprofile.c.o CMakeFiles/kalign_OBJ.dir/src/aln_profileprofile.c.o CMakeFiles/kalign_OBJ.dir/src/weave_alignment.c.o
-/usr/bin/ranlib libkalign.a
 /usr/bin/ranlib libkalign_static.a
+/usr/bin/ranlib libkalign.a
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 74%] Built target kalign_static
+make  -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
+make  -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
 [ 74%] Built target kalign
 make  -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
 make  -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/depend
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
 make  -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/depend
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make  -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
+make  -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
 make  -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/depend
 make  -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/depend
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalignfmt.dir/DependInfo.cmake "--color="
 make  -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/depend
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/dssim.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_io_test.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_lib_test.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kalign_cmp_test.dir/DependInfo.cmake "--color="
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/kaligncpp.dir/DependInfo.cmake "--color="
-[ 74%] Built target kalign_static
-make  -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/depend
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/CMakeFiles/kalign-bin.dir/DependInfo.cmake "--color="
-make  -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/depend
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/kalign-3.4.0 /build/reproducible-path/kalign-3.4.0/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/CMakeFiles/largebench.dir/DependInfo.cmake "--color="
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f src/CMakeFiles/kalignfmt.dir/build.make src/CMakeFiles/kalignfmt.dir/build
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 75%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f tests/CMakeFiles/kalign_io_test.dir/build.make tests/CMakeFiles/kalign_io_test.dir/build
+[ 77%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 78%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
 make  -f tests/CMakeFiles/kalign_lib_test.dir/build.make tests/CMakeFiles/kalign_lib_test.dir/build
-make  -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make  -f tests/CMakeFiles/dssim.dir/build.make tests/CMakeFiles/dssim.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
 make  -f tests/CMakeFiles/kalign_cmp_test.dir/build.make tests/CMakeFiles/kalign_cmp_test.dir/build
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f src/CMakeFiles/kalign-bin.dir/build.make src/CMakeFiles/kalign-bin.dir/build
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make  -f tests/CMakeFiles/kaligncpp.dir/build.make tests/CMakeFiles/kaligncpp.dir/build
+make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-make  -f tests/CMakeFiles/largebench.dir/build.make tests/CMakeFiles/largebench.dir/build
 make[3]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 75%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
-[ 77%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
+[ 79%] Building C object src/CMakeFiles/kalignfmt.dir/run_reformat.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/run_reformat.c.o -MF CMakeFiles/kalignfmt.dir/run_reformat.c.o.d -o CMakeFiles/kalignfmt.dir/run_reformat.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_reformat.c
-[ 82%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
-[ 82%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
+[ 81%] Building C object src/CMakeFiles/kalignfmt.dir/parameters.c.o
 [ 82%] Building C object tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalignfmt.dir/parameters.c.o -MF CMakeFiles/kalignfmt.dir/parameters.c.o.d -o CMakeFiles/kalignfmt.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
-[ 82%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
+[ 83%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -MF CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o.d -o CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_io_test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
-[ 85%] Building C object tests/CMakeFiles/dssim.dir/dssim.c.o
 [ 85%] Building C object tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim.c.o -MF CMakeFiles/dssim.dir/dssim.c.o.d -o CMakeFiles/dssim.dir/dssim.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim.c
-[ 86%] Building C object src/CMakeFiles/kalign-bin.dir/run_kalign.c.o
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -MF CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o.d -o CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_cmp_test.c
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/run_kalign.c.o -MF CMakeFiles/kalign-bin.dir/run_kalign.c.o.d -o CMakeFiles/kalign-bin.dir/run_kalign.c.o -c /build/reproducible-path/kalign-3.4.0/src/run_kalign.c
-[ 87%] Building C object tests/CMakeFiles/largebench.dir/large_benchmark.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/largebench.dir/large_benchmark.c.o -MF CMakeFiles/largebench.dir/large_benchmark.c.o.d -o CMakeFiles/largebench.dir/large_benchmark.c.o -c /build/reproducible-path/kalign-3.4.0/tests/large_benchmark.c
-[ 89%] Building C object src/CMakeFiles/kalign-bin.dir/parameters.c.o
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT src/CMakeFiles/kalign-bin.dir/parameters.c.o -MF CMakeFiles/kalign-bin.dir/parameters.c.o.d -o CMakeFiles/kalign-bin.dir/parameters.c.o -c /build/reproducible-path/kalign-3.4.0/src/parameters.c
-[ 90%] Linking C executable kalign_io_test
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
-[ 91%] Linking C executable kalign_cmp_test
+[ 86%] Building C object tests/CMakeFiles/dssim.dir/dssim_test.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/src -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/dssim.dir/dssim_test.c.o -MF CMakeFiles/dssim.dir/dssim_test.c.o.d -o CMakeFiles/dssim.dir/dssim_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/dssim_test.c
+[ 87%] Building CXX object tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/c++ -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -MF CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o.d -o CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp
+[ 89%] Building C object tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cc -DHAVE_OPENMP -I/build/reproducible-path/kalign-3.4.0/lib/include -I/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -std=gnu11 -Wall -Wextra -pedantic -MD -MT tests/CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -MF CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o.d -o CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -c /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_test.c
+[ 90%] Linking C executable kalign_cmp_test
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_cmp_test.dir/link.txt --verbose=1
+[ 91%] Linking C executable kalign_io_test
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_io_test.dir/link.txt --verbose=1
 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_cmp_test.dir/kalign_cmp_test.c.o -o kalign_cmp_test  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_io_test.dir/kalign_io_test.c.o -o kalign_io_test  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 91%] Built target kalign_cmp_test
 [ 93%] Linking C executable kalign_lib_test
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign_lib_test.dir/link.txt --verbose=1
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 [ 93%] Built target kalign_io_test
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalign_lib_test.dir/kalign_lib_test.c.o -o kalign_lib_test  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 93%] Built target kalign_cmp_test
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 93%] Built target kalign_lib_test
-[ 94%] Linking C executable kalignfmt
+[ 94%] Linking C executable kalign
+[ 94%] Built target kalign_lib_test
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign  ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
+[ 95%] Linking C executable kalignfmt
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalignfmt.dir/link.txt --verbose=1
 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kalignfmt.dir/run_reformat.c.o CMakeFiles/kalignfmt.dir/parameters.c.o -o kalignfmt  ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
-[ 95%] Linking C executable kalign
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/kalign-bin.dir/link.txt --verbose=1
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now "CMakeFiles/kalign-bin.dir/run_kalign.c.o" "CMakeFiles/kalign-bin.dir/parameters.c.o" -o kalign  ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 [ 95%] Built target kalignfmt
+make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 95%] Built target kalign-bin
 [ 97%] Linking C executable largebench
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/largebench.dir/link.txt --verbose=1
 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/largebench.dir/large_benchmark.c.o -o largebench  ../lib/libtldevel.a ../lib/libkalign_static.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
+[ 98%] Linking C executable dssim
+cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
+/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim  ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
+[ 98%] Built target largebench
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[ 97%] Built target kalign-bin
-[ 97%] Built target largebench
+[ 98%] Built target dssim
 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp: In function 'int main()':
 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:10:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
    10 |                 "GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE",
@@ -762,24 +803,19 @@
 /build/reproducible-path/kalign-3.4.0/tests/kalign_lib_testCXX.cpp:13:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
    13 |                 "MHIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNYGKKKKRKREK",
       |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-[ 98%] Linking C executable dssim
-cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/dssim.dir/link.txt --verbose=1
-/usr/bin/cc -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dssim.dir/dssim_test.c.o CMakeFiles/dssim.dir/dssim.c.o -o dssim  ../lib/libtldevel.a ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 [100%] Linking CXX executable kaligncpp
 cd /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/kaligncpp.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/kalign-3.4.0=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DNOHAVE_AVX2 -Wl,-z,relro -Wl,-z,now CMakeFiles/kaligncpp.dir/kalign_lib_testCXX.cpp.o -o kaligncpp  ../lib/libkalign.a -lm /usr/lib/gcc/i686-linux-gnu/13/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a 
 make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
-[100%] Built target dssim
-make[3]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 [100%] Built target kaligncpp
 make[2]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/CMakeFiles 0
 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
    dh_auto_test
-	cd obj-i686-linux-gnu && make -j11 test ARGS\+=--verbose ARGS\+=-j11
+	cd obj-i686-linux-gnu && make -j21 test ARGS\+=--verbose ARGS\+=-j21
 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 Running tests...
-/usr/bin/ctest --force-new-ctest-process --verbose -j11
+/usr/bin/ctest --force-new-ctest-process --verbose -j21
 UpdateCTestConfiguration  from :/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
 Parse Config file:/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
 UpdateCTestConfiguration  from :/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/DartConfiguration.tcl
@@ -857,8 +893,14 @@
 11: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/src/kalign "/build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa"
 11: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
 11: Test timeout computed to be: 1500
+test 12
+      Start 12: DSSIM_takes_a_min
+
+12: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/dssim
+12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
+12: Test timeout computed to be: 1500
 1: LEN: 256
-1: [2024-04-04 07:00:35] :     LOG : Testing correctness of serial bpm.
+1: [2025-05-07 13:26:56] :     LOG : Testing correctness of serial bpm.
 2: LEN: 21
 2: @	-1
 2: A	0
@@ -991,63 +1033,63 @@
 2: ]	-1
 2: ^	-1
 2: _	-1
-3: [2024-04-04 07:00:35] :     LOG : Check for correctness.
-3: [2024-04-04 07:00:35] :     LOG : Timing serial
-3: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
-4: 242 401 450 962 718
-4: 110 317 800 962 588
-4: 442 870 803 719 516
-4: 890 588 179 853 577
-4: 29 457 400 677 287
-4: 466 867 527 476 860
-4: 120 725 321 309 95
-4: 656 227 724 359 682
-4: 913 938 804 641 835
-4: 710 528 485 544 718
-4: 149 382 589 531 320
-4: 386 978 134 221 930
-4: 61 618 114 551 4
-4: 660 21 877 259 113
-4: 169 411 677 604 251
-4: 940 382 333 276 595
-4: 883 416 420 676 858
-4: 403 665 400 860 318
-4: 459 721 232 7 918
-4: 661 928 470 242 174
-4: 948 411 391 710 77
-4: 886 236 914 107 310
-4: 546 347 939 124 680
-4: 679 421 336 570 62
-4: 240 31 252 116 321
-4: 121 583 393 246 610
-4: 965 812 499 945 474
-4: 224 554 728 911 637
-4: 55 145 670 78 560
-4: 185 439 253 647 535
-4: 388 619 873 760 69
-4: 440 439 269 287 185
-4: 224 445 814 87 606
-4: 119 720 259 925 929
-4: 760 912 612 603 644
-4: 66 415 644 723 193
-4: 891 968 538 42 681
-4: 891 730 304 899 365
-4: 637 183 980 797 383
-4: 750 962 755 186 473
-4: 245 720 710 150 29
-4: 407 177 133 715 99
-4: 656 575 903 109 740
-4: 606 141 686 902 274
-4: 720 35 738 56 35
-4: 623 411 959 95 918
-4: 897 343 363 964 342
-4: 728 443 535 79 443
-4: 611 582 612 282 669
-4: 88 3 479 134 214
-4: 409 671 814 94 588
-4: 667 903 297 837 22
-4: 231 19 633 285 876
-4: 312 208 640 954 541
+3: [2025-05-07 13:26:56] :     LOG : Check for correctness.
+3: [2025-05-07 13:26:56] :     LOG : Timing serial
+3: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
+4: 223 990 299 456 239
+4: 984 313 28 118 550
+4: 287 740 457 977 587
+4: 214 604 647 478 277
+4: 532 86 383 41 827
+4: 753 759 186 34 594
+4: 930 884 92 101 976
+4: 592 841 128 606 79
+4: 893 616 26 607 400
+4: 376 282 177 694 344
+4: 673 190 458 740 226
+4: 567 703 171 476 137
+4: 704 830 945 729 976
+4: 822 265 832 932 686
+4: 653 943 571 420 396
+4: 903 834 486 554 586
+4: 270 530 322 853 507
+4: 923 879 946 342 206
+4: 735 165 966 914 170
+4: 257 63 641 421 295
+4: 733 243 171 862 329
+4: 787 559 30 535 517
+4: 508 534 329 926 870
+4: 987 487 58 452 767
+4: 815 754 312 364 11
+4: 511 6 722 289 24
+4: 160 926 546 294 46
+4: 244 732 629 352 38
+4: 777 304 977 852 6
+4: 57 385 782 686 68
+4: 95 803 875 512 647
+4: 271 970 941 937 9
+4: 259 9 241 281 116
+4: 820 458 213 730 482
+4: 196 741 153 374 49
+4: 309 340 809 304 122
+4: 771 873 166 720 50
+4: 719 669 639 901 899
+4: 766 143 48 211 777
+4: 379 949 219 644 640
+4: 213 553 141 604 407
+4: 789 386 499 581 943
+4: 239 882 523 734 243
+4: 199 523 76 926 46
+4: 918 560 257 690 141
+4: 827 971 815 909 423
+4: 326 868 927 688 92
+4: 192 519 693 343 680
+4: 865 195 375 639 33
+4: 789 160 659 658 449
+4: 38 210 91 331 360
+4: 186 41 980 156 439
+4: 851 417 358 42 339
+4: 490 183 475 179 422
 5: Aligned:
 5: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE----------
 5: ------MQDRVKRPMNAFIVWSRDQRRKMALENPRMR-NS-EISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKYRP---RRKAKMLPK
@@ -1069,15 +1111,15 @@
 6:   Bioinformatics (2019) 
 6:   https://doi.org/10.1093/bioinformatics/btz795
 6: 
-6: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-6: [2024-04-04 07:00:35] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
-6: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-6: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
-6: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-6: [2024-04-04 07:00:35] :     LOG : Building guide tree.
-6: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-6: [2024-04-04 07:00:35] :     LOG : Aligning
-6: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+6: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+6: [2025-05-07 13:26:56] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001.tfa.
+6: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.01u 00:00:00.00 Elapsed: 00:00:00.00
+6: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+6: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
+6: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+6: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+6: [2025-05-07 13:26:56] :     LOG : Aligning
+6: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
 6: >1aab_
 6: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
 6: KFEDMAKADKARYEREMKTYIPPKGE----------
@@ -1106,15 +1148,15 @@
 7:   Bioinformatics (2019) 
 7:   https://doi.org/10.1093/bioinformatics/btz795
 7: 
-7: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-7: [2024-04-04 07:00:35] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
-7: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-7: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
-7: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-7: [2024-04-04 07:00:35] :     LOG : Building guide tree.
-7: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-7: [2024-04-04 07:00:35] :     LOG : Aligning
-7: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+7: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+7: [2025-05-07 13:26:56] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB11001_EOF.msf.
+7: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+7: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+7: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.07u 00:00:00.07 Elapsed: 00:00:00.00
+7: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+7: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+7: [2025-05-07 13:26:56] :     LOG : Aligning
+7: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
 7: >1aab_
 7: ---GKGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG
 7: KFEDMAKADKARYEREMKTYIPPKGE----------
@@ -1143,15 +1185,15 @@
 8:   Bioinformatics (2019) 
 8:   https://doi.org/10.1093/bioinformatics/btz795
 8: 
-8: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-8: [2024-04-04 07:00:35] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
-8: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-8: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
-8: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-8: [2024-04-04 07:00:35] :     LOG : Building guide tree.
-8: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-8: [2024-04-04 07:00:35] :     LOG : Aligning
-8: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
+8: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+8: [2025-05-07 13:26:56] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.msf.
+8: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
+8: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+8: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+8: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+8: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+8: [2025-05-07 13:26:56] :     LOG : Aligning
+8: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
 8: >1al2_ad
 8: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
 8: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
@@ -1192,74 +1234,15 @@
 9:   Bioinformatics (2019) 
 9:   https://doi.org/10.1093/bioinformatics/btz795
 9: 
-9: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-9: [2024-04-04 07:00:35] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
-9: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-9: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
-10: 
-10: Kalign (3.4.0)
-10: 
-10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
-10: 
-10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
-10: `kalign -showw'.
-10: This is free software, and you are welcome to redistribute it
-10: under certain conditions; consult the COPYING file for details.
-10: 
-10: Please cite:
-10:   Lassmann, Timo.
-10:   "Kalign 3: multiple sequence alignment of large data sets."
-10:   Bioinformatics (2019) 
-10:   https://doi.org/10.1093/bioinformatics/btz795
-10: 
-10: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-10: [2024-04-04 07:00:35] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
-10: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-10: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
-11: 
-11: Kalign (3.4.0)
-11: 
-11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
-11: 
-11: This program comes with ABSOLUTELY NO WARRANTY; for details type:
-11: `kalign -showw'.
-11: This is free software, and you are welcome to redistribute it
-11: under certain conditions; consult the COPYING file for details.
-11: 
-11: Please cite:
-11:   Lassmann, Timo.
-11:   "Kalign 3: multiple sequence alignment of large data sets."
-11:   Bioinformatics (2019) 
-11:   https://doi.org/10.1093/bioinformatics/btz795
-11: 
-11: [2024-04-04 07:00:35] :     LOG : Detected protein sequences.
-11: [2024-04-04 07:00:35] :     LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
-11: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
-11: [2024-04-04 07:00:35] :     LOG : Calculating pairwise distances
- 1/12 Test  #2: alphabet_utest ...................   Passed    0.03 sec
-test 12
-      Start 12: DSSIM_takes_a_min
-
-12: Test command: /build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu/tests/dssim
-12: Working Directory: /build/reproducible-path/kalign-3.4.0/tests
-12: Test timeout computed to be: 1500
- 2/12 Test  #3: edist_utest ......................   Passed    0.04 sec
- 3/12 Test  #4: task_utest .......................   Passed    0.04 sec
- 4/12 Test  #5: C++Lib ...........................   Passed    0.04 sec
- 5/12 Test  #6: kalign_itest_BB11001.tfa .........   Passed    0.03 sec
- 6/12 Test  #7: kalign_itest_BB11001_EOF.msf .....   Passed    0.03 sec
- 7/12 Test  #8: kalign_itest_BB12006.msf .........   Passed    0.03 sec
-9: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.05u 00:00:00.04 Elapsed: 00:00:00.00
-9: [2024-04-04 07:00:35] :     LOG : Building guide tree.
-10: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
-10: [2024-04-04 07:00:35] :     LOG : Building guide tree.
-12: [2024-04-04 07:00:35] :     LOG : DSSim - a simplistic sequence simulator.
-12: [2024-04-04 07:00:35] :     LOG : Protein alignments - 20 seq
-10: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
-10: [2024-04-04 07:00:35] :     LOG : Aligning
-9: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.02u 00:00:00.02 Elapsed: 00:00:00.00
-9: [2024-04-04 07:00:35] :     LOG : Aligning
-9: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
+9: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+9: [2025-05-07 13:26:56] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
+9: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
+9: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+9: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+9: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+9: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+9: [2025-05-07 13:26:56] :     LOG : Aligning
+9: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.01u 00:00:00.01 Elapsed: 00:00:00.00
 9: >1al2_ad
 9: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
 9: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
@@ -1284,7 +1267,39 @@
 9: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
 9: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
 9: Q----
-10: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.03u 00:00:00.03 Elapsed: 00:00:00.00
+10: 
+10: Kalign (3.4.0)
+10: 
+10: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
+10: 
+10: This program comes with ABSOLUTELY NO WARRANTY; for details type:
+10: `kalign -showw'.
+10: This is free software, and you are welcome to redistribute it
+10: under certain conditions; consult the COPYING file for details.
+10: 
+10: Please cite:
+10:   Lassmann, Timo.
+10:   "Kalign 3: multiple sequence alignment of large data sets."
+10:   Bioinformatics (2019) 
+10:   https://doi.org/10.1093/bioinformatics/btz795
+10: 
+10: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+10: [2025-05-07 13:26:56] :     LOG : Read 4 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB12006.tfa.
+10: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+10: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+10: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+10: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+10: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+10: [2025-05-07 13:26:56] :     LOG : Aligning
+ 1/12 Test  #2: alphabet_utest ...................   Passed    0.07 sec
+ 2/12 Test  #3: edist_utest ......................   Passed    0.07 sec
+ 3/12 Test  #4: task_utest .......................   Passed    0.06 sec
+ 4/12 Test  #5: C++Lib ...........................   Passed    0.06 sec
+ 5/12 Test  #6: kalign_itest_BB11001.tfa .........   Passed    0.06 sec
+ 6/12 Test  #7: kalign_itest_BB11001_EOF.msf .....   Passed    0.06 sec
+ 7/12 Test  #8: kalign_itest_BB12006.msf .........   Passed    0.06 sec
+ 8/12 Test  #9: kalign_itest_BB12006.tfa .........   Passed    0.06 sec
+10: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.02u 00:00:00.01 Elapsed: 00:00:00.00
 10: >1al2_ad
 10: G-LPVMNTPGSNQYLTADNFQSPCALPEFDVTPPIDIPGEVKNMMELAEI-DTMIPFDLS
 10: ATKKNTMEMYRVRLSDKPHTDDPILCLSLSPASDPRLSHTMLGEILNYYTHWAGSLKFTF
@@ -1309,13 +1324,34 @@
 10: VFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQATYAIWDLGLNSSYSFTVPFISPTHFRM
 10: VGTDQA--NITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSP
 10: Q----
-11: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.09u 00:00:00.09 Elapsed: 00:00:00.00
-11: [2024-04-04 07:00:35] :     LOG : Building guide tree.
- 8/12 Test #10: kalign_itest_BB30014.msf .........   Passed    0.05 sec
- 9/12 Test  #9: kalign_itest_BB12006.tfa .........   Passed    0.05 sec
-11: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.12u 00:00:00.11 Elapsed: 00:00:00.00
-11: [2024-04-04 07:00:35] :     LOG : Aligning
-11: [2024-04-04 07:00:35] :     LOG : CPU Time: 0.14u 00:00:00.13 Elapsed: 00:00:00.00
+12: [2025-05-07 13:26:56] :     LOG : DSSim - a simplistic sequence simulator.
+12: [2025-05-07 13:26:56] :     LOG : Protein alignments - 20 seq
+11: 
+11: Kalign (3.4.0)
+11: 
+11: Copyright (C) 2006,2019,2020,2021,2023 Timo Lassmann
+11: 
+11: This program comes with ABSOLUTELY NO WARRANTY; for details type:
+11: `kalign -showw'.
+11: This is free software, and you are welcome to redistribute it
+11: under certain conditions; consult the COPYING file for details.
+11: 
+11: Please cite:
+11:   Lassmann, Timo.
+11:   "Kalign 3: multiple sequence alignment of large data sets."
+11:   Bioinformatics (2019) 
+11:   https://doi.org/10.1093/bioinformatics/btz795
+11: 
+11: [2025-05-07 13:26:56] :     LOG : Detected protein sequences.
+11: [2025-05-07 13:26:56] :     LOG : Read 44 sequences from /build/reproducible-path/kalign-3.4.0/tests/data/BB30014.tfa.
+11: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.00u 00:00:00.00 Elapsed: 00:00:00.00
+11: [2025-05-07 13:26:56] :     LOG : Calculating pairwise distances
+ 9/12 Test #10: kalign_itest_BB30014.msf .........   Passed    0.03 sec
+11: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.04u 00:00:00.04 Elapsed: 00:00:00.00
+11: [2025-05-07 13:26:56] :     LOG : Building guide tree.
+11: [2025-05-07 13:26:56] :     LOG : CPU Time: 0.06u 00:00:00.05 Elapsed: 00:00:00.00
+11: [2025-05-07 13:26:56] :     LOG : Aligning
+11: [2025-05-07 13:26:57] :     LOG : CPU Time: 0.06u 00:00:00.06 Elapsed: 00:00:01.00
 11: >1ags_A
 11: ----------------------------------AEKPKLHYFNARGRMESTRWLLAAAG
 11: VEFEEKFIKSAEDLDKLRNDG--YLMFQQVPMVEI-----DG--MKLVQTRAILNYIA--
@@ -1624,46 +1660,46 @@
 11: ----KNPDLREEKFA-DIKKAYDNAEQLLT----GDFYS-GTSKPGFVDYLLYPNIQRAY
 11: WAAHIVPDFPLEAESFPGPN-YPRLSKWYKAL-ESIPEVAAASQPTENGVGFFKDYLGGS
 11: PNYDYGLTKLSETI
+10/12 Test #11: kalign_itest_BB30014.tfa .........   Passed    0.10 sec
 1:   0 6300   0   0 
 1:   0   0 6300 6300 
 1:   0   0   0   0 
 1:   0   0   0   0 
 1: 
-1: [2024-04-04 07:00:35] :     LOG : Testing correctness of AVX bpm.
-10/12 Test #11: kalign_itest_BB30014.tfa .........   Passed    0.21 sec
+1: [2025-05-07 13:26:57] :     LOG : Testing correctness of AVX bpm.
 1:   0   0   0   0 
 1:   0   0   0   0 
 1:   0   0   0   0 
 1:   0   0   0   0 
 1: 
 1: Dyn	AVX	DYN/AVX
-1: [2024-04-04 07:00:45] :     LOG : Timing DYN 256
+1: [2025-05-07 13:27:04] :     LOG : Timing DYN 256
+1: [2025-05-07 13:27:07] :     LOG : 2.434517  - dyn 
+1: [2025-05-07 13:27:07] :     LOG : 0.000000  - bpm 
+1: [2025-05-07 13:27:07] :     LOG : 0.144470  - bpm_block2 
+1: [2025-05-07 13:27:07] :     LOG : 0.154209  - bpm_block 
+11/12 Test  #1: bpm_utest ........................   Passed   11.17 sec
 12: 
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  15%
[=======                                           ]  15%
[=======                                           ]  15%
[=======                                           ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  29%
[==============                                    ]  29%
[==============                                    ]  29%
[==============                                    ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  57%
[============================                      ]  57%
[============================                      ]  57%
[============================                      ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
-12: [2024-04-04 07:00:46] :     LOG : Protein alignments - 1000 seq
-1: [2024-04-04 07:00:48] :     LOG : 2.475150  - dyn 
-1: [2024-04-04 07:00:48] :     LOG : 0.000000  - bpm 
-1: [2024-04-04 07:00:48] :     LOG : 0.311065  - bpm_block2 
-1: [2024-04-04 07:00:48] :     LOG : 0.313029  - bpm_block 
-11/12 Test  #1: bpm_utest ........................   Passed   13.04 sec
+12: [2025-05-07 13:27:13] :     LOG : Protein alignments - 1000 seq
 12: 
[                                                  ]   0%
[=====                                             ]  10%
[==========                                        ]  20%
[===============                                   ]  30%
[====================                              ]  40%
[=========================                         ]  50%
[==============================                    ]  60%
[===================================               ]  70%
[========================================          ]  80%
[=============================================     ]  90%
[==================================================] 100%
-12: [2024-04-04 07:01:12] :     LOG : Protein alignments - 10000 seq
+12: [2025-05-07 13:27:33] :     LOG : Protein alignments - 10000 seq
 12: 
[                                                  ]   0%
[=========================                         ]  50%
[==================================================] 100%
-12: [2024-04-04 07:01:33] :     LOG : DNA     alignments - 20 seq
+12: [2025-05-07 13:27:45] :     LOG : DNA     alignments - 20 seq
 12: 
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   0%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[                                                  ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   1%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   2%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[=                                                 ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   3%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   4%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[==                                                ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   5%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   6%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[===                                               ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   7%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   8%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[====                                              ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]   9%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  10%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[=====                                             ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  11%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  12%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[======                                            ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  13%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  14%
[=======                                           ]  15%
[=======                                           ]  15%
[=======                                           ]  15%
[=======                                           ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  15%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  16%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[========                                          ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  17%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  18%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[=========                                         ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  19%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  20%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[==========                                        ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  21%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  22%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[===========                                       ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  23%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  24%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[============                                      ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  25%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  26%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[=============                                     ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  27%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  28%
[==============                                    ]  29%
[==============                                    ]  29%
[==============                                    ]  29%
[==============                                    ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  29%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  30%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[===============                                   ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  31%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  32%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[================                                  ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  33%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  34%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[=================                                 ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  35%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  36%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[==================                                ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  37%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  38%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[===================                               ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  39%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  40%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[====================                              ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  41%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  42%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[=====================                             ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  43%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  44%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[======================                            ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  45%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  46%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[=======================                           ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  47%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  48%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[========================                          ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  49%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  50%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[=========================                         ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  51%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  52%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[==========================                        ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  53%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  54%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[===========================                       ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  55%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  56%
[============================                      ]  57%
[============================                      ]  57%
[============================                      ]  57%
[============================                      ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  57%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  58%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[=============================                     ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  59%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  60%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[==============================                    ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  61%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  62%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[===============================                   ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  63%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  64%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[================================                  ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  65%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  66%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[=================================                 ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  67%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  68%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[==================================                ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  69%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  70%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[===================================               ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  71%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  72%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[====================================              ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  73%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  74%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[=====================================             ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  75%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  76%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[======================================            ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  77%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  78%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[=======================================           ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  79%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  80%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[========================================          ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  81%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  82%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[=========================================         ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  83%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  84%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[==========================================        ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  85%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  86%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[===========================================       ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  87%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  88%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[============================================      ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  89%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  90%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[=============================================     ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  91%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  92%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[==============================================    ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  93%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  94%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[===============================================   ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  95%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  96%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================  ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  97%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  98%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[================================================= ]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================]  99%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
[==================================================] 100%
-12: [2024-04-04 07:01:50] :     LOG : DNA     alignments - 1000 seq
+12: [2025-05-07 13:28:13] :     LOG : DNA     alignments - 1000 seq
 12: 
[                                                  ]   0%
[=====                                             ]  10%
[==========                                        ]  20%
[===============                                   ]  30%
[====================                              ]  40%
[=========================                         ]  50%
[==============================                    ]  60%
[===================================               ]  70%
[========================================          ]  80%
[=============================================     ]  90%
[==================================================] 100%
-12: [2024-04-04 07:02:07] :     LOG : DNA     alignments - 10000 seq
+12: [2025-05-07 13:28:22] :     LOG : DNA     alignments - 10000 seq
 12: 
[                                                  ]   0%
[=========================                         ]  50%
[==================================================] 100%
-12/12 Test #12: DSSIM_takes_a_min ................   Passed  102.65 sec
+12/12 Test #12: DSSIM_takes_a_min ................   Passed   91.58 sec
 
 100% tests passed, 0 tests failed out of 12
 
-Total Test time (real) = 102.69 sec
+Total Test time (real) =  91.71 sec
 make[1]: Leaving directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
    create-stamp debian/debhelper-build-stamp
    dh_prep
    dh_auto_install --destdir=debian/kalign/
-	cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/kalign-3.4.0/debian/kalign AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[1]: Entering directory '/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/kalign-3.4.0 -B/build/reproducible-path/kalign-3.4.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -1717,12 +1753,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/117385/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/37480 and its subdirectories
-I: Current time: Wed Apr  3 19:02:27 -12 2024
-I: pbuilder-time-stamp: 1712214147
+I: removing directory /srv/workspace/pbuilder/117385 and its subdirectories
+I: Current time: Thu May  8 03:29:10 +14 2025
+I: pbuilder-time-stamp: 1746624550