Diff of the two buildlogs: -- --- b1/build.log 2024-05-23 13:50:31.011932809 +0000 +++ b2/build.log 2024-05-23 13:54:33.741603991 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 25 08:11:30 -12 2025 -I: pbuilder-time-stamp: 1750882290 +I: Current time: Fri May 24 03:50:34 +14 2024 +I: pbuilder-time-stamp: 1716472234 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2039631/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 23 13:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a13d7ac88d944856b20ccd31b9891ade' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2039631' - PS1='# ' - PS2='> ' + INVOCATION_ID=19352f8a54e54cf9b3bb4e600fb88e4e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=738221 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2O4aL309/pbuilderrc_wIiP --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2O4aL309/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2O4aL309/pbuilderrc_8DeK --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2O4aL309/b2 --logfile b2/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 25 14:06 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2039631/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 23 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -298,7 +330,7 @@ Get: 166 http://deb.debian.org/debian unstable/main amd64 libjacoco-java all 0.8.12-1 [647 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libjimfs-java all 1.1-6 [191 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libtruth-java all 0.39-1 [164 kB] -Fetched 219 MB in 25s (8788 kB/s) +Fetched 219 MB in 20s (10.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19718 files and directories currently installed.) @@ -1179,7 +1211,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1202,7 +1238,7 @@ dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -1210,18 +1246,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.022 secs. -The client will now receive all logging from the daemon (pid: 2060697). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2060697.out.log +An attempt to start the daemon took 1.779 secs. +The client will now receive all logging from the daemon (pid: 774759). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-774759.out.log +Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Daemon will be stopped at the end of the build stopping after processing -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5fe66777 -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5fe66777 -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@27445962 +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e866d5f +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e866d5f +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@51caf6eb Starting Build Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@7829182 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@125c3b13 Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1244,24 +1280,24 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@2753aee9 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@29d63f9 Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@27445962 -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3b31074 -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@67c83a92 -:capsule:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@51caf6eb +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@7671ed49 +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@f43e96e +:capsule:compileJava (Thread[Task worker for ':',5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Task worker for ':' Thread 15,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.003 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.003 secs. -Up-to-date check for task ':capsule:compileJava' took 0.012 secs. It is not up-to-date because: +Putting task artifact state for task ':capsule:compileJava' into context took 0.009 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.009 secs. +Up-to-date check for task ':capsule:compileJava' took 0.025 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.042 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileJava' took 0.187 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Use of target 1.7 is no longer supported, switching to 8 @@ -1279,63 +1315,63 @@ Note: Recompile with -Xlint:unchecked for details. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:capsule-util:compileJava (Thread[Task worker for ':' Thread 15,5,main]) completed. Took 1.65 secs. 2 warnings -:capsule-util:processResources (Thread[Task worker for ':' Thread 15,5,main]) started. -:capsule-util:processResources -Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -:capsule:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 1.655 secs. -:capsule:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 4.42 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.002 secs. It is not up-to-date because: - No history is available. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.002 secs. -:capsule:classes (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.012 secs. +:capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:classes (Thread[Task worker for ':',5,main]) completed. Took 0.003 secs. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.002 secs. It is not up-to-date because: No history is available. -:capsule-util:processResources (Thread[Task worker for ':' Thread 15,5,main]) completed. Took 0.017 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 15,5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 4.538 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule-util:processResources +Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. +Up-to-date check for task ':capsule-util:processResources' took 0.033 secs. It is not up-to-date because: + No history is available. +:capsule-util:processResources (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.093 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[Task worker for ':' Thread 15,5,main]) completed. Took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 15,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.0 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.001 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.011 secs. It is not up-to-date because: No history is available. - Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom -:capsule:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.099 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 15,5,main]) completed. Took 0.086 secs. -:capsule:jar (Thread[Task worker for ':' Thread 5,5,main]) started. -:capsule:jar -Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 15,5,main]) started. + Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.113 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 5,5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.324 secs. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.003 secs. It is not up-to-date because: +:capsule:jar (Thread[Task worker for ':',5,main]) started. +:capsule:jar +Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. +Up-to-date check for task ':capsule:jar' took 0.021 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule-util:jar' took 0.007 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:jar' took 0.03 secs. It is not up-to-date because: No history is available. -:capsule-util:jar (Thread[Task worker for ':' Thread 15,5,main]) completed. Took 0.32 secs. -:capsule:jar (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.321 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.097 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 5,5,main]) completed. Took 0.182 secs. -BUILD SUCCESSFUL in 8s +BUILD SUCCESSFUL in 15s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=42 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=20 test openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -1343,17 +1379,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.034 secs. -The client will now receive all logging from the daemon (pid: 2062622). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-2062622.out.log +An attempt to start the daemon took 1.796 secs. +The client will now receive all logging from the daemon (pid: 777268). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-777268.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7e7a88f5 -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7e7a88f5 -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@d54399 +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2952c14f +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2952c14f +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ce19c88 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@26c3839f +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2adbdbc2 Settings evaluated using settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1371,27 +1407,27 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6e111716 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@5b055e1d Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@d54399 -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@48b2605d -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@139283d5 +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ce19c88 +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6393ad83 +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a5be29c :capsule:compileJava (Thread[Task worker for ':',5,main]) started. +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[Task worker for ':' Thread 8,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.007 secs. -Putting task artifact state for task ':capsule:compileJava' into context took 0.007 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.033 secs). +Putting task artifact state for task ':capsule:compileJava' into context took 0.01 secs. +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.01 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.055 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.07 secs. +:capsule:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.146 secs. :capsule:processResources (Thread[Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. +:capsule:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.054 secs. :capsule:classes (Thread[Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. @@ -1400,55 +1436,55 @@ :capsule:debianMavenPom (Thread[Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.003 secs). +Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.006 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.005 secs. -:capsule:jar (Thread[Task worker for ':' Thread 11,5,main]) started. +:capsule:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.081 secs. +:capsule:jar (Thread[Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.005 secs). +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.224 secs). +:capsule-util:compileJava UP-TO-DATE +:capsule-util:compileJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.295 secs. +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) started. +:capsule-util:processResources +Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. +Skipping task ':capsule:jar' as it is up-to-date (took 0.014 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.01 secs. -:capsule:processTestResources (Thread[Task worker for ':' Thread 11,5,main]) started. +:capsule:jar (Thread[Task worker for ':',5,main]) completed. Took 0.028 secs. +:capsule:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.001 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.081 secs). -:capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.113 secs. -:capsule-util:processResources (Thread[Task worker for ':' Thread 8,5,main]) started. -:capsule-util:processResources -Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.004 secs). +:capsule:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.004 secs. +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.022 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.007 secs. -:capsule-util:classes (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule-util:processResources (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.032 secs. +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.0 secs. -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule-util:classes (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.002 secs. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.002 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.007 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.003 secs. -:capsule-util:jar (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule-util:debianMavenPom (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.014 secs. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.004 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.013 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.006 secs. -:capsule:compileTestJava (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule-util:jar (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.083 secs. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2e1d588a +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@5f2b71f1 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x @@ -1459,6 +1495,8 @@ Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Passing through com.google.jimfs:jimfs-parent:jar:debian + Passing through com.google.jimfs:jimfs-parent:jar:debian + Ignoring org.jooq:joor:jar:0.9.6 Ignoring org.jooq:joor:jar:0.9.6 Passing through org.hamcrest:hamcrest:jar:debian Passing through org.hamcrest:hamcrest:jar:debian @@ -1472,58 +1510,63 @@ Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule:compileTestJava' took 1.279 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileTestJava' took 2.299 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule-util:compileTestJava' took 1.31 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 2.313 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. Use of target 1.7 is no longer supported, switching to 8 -Use of source 1.7 is no longer supported, switching to 8 Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 +Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. Compiling with JDK Java compiler API. -:capsule-util:compileTestJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 3.039 secs. -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 5.033 secs. +:capsule-util:processTestResources (Thread[Task worker for ':',5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.002 secs. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.021 secs. +:capsule-util:testClasses (Thread[Task worker for ':',5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. -:capsule-util:test (Thread[Task worker for ':' Thread 3,5,main]) started. +:capsule-util:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. +:capsule-util:test (Thread[Task worker for ':',5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian Passing through org.jacoco:org.jacoco.build:jar:debian -Up-to-date check for task ':capsule-util:test' took 0.14 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 0.49 secs. It is not up-to-date because: No history is available. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/TestCapsule.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:capsule:compileTestJava (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 3.324 secs. -:capsule:testClasses (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule:compileTestJava (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 5.734 secs. +:capsule:testClasses (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.0 secs. -:capsule:test (Thread[Task worker for ':' Thread 8,5,main]) started. +:capsule:testClasses (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. +:capsule:test (Thread[Task worker for ':' Thread 11,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule:test' took 0.018 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:test' took 0.204 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath14181189090966447595txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath10969076859268149717txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Successfully started process 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath4634484323212431691txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath7951084115518822984txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 2' +Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Gradle Test Executor 2 started executing tests. Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Gradle Test Executor 2 started executing tests. +Running test: Test testExtendClasspath(NextflowLoaderTest) +Running test: Test testExtendDeps(NextflowLoaderTest) +Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) + +CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1543,6 +1586,7 @@ CapsuleTest > testNatives1 SKIPPED Running test: Test testNatives2(CapsuleTest) +Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) CapsuleTest > testNatives2 SKIPPED Running test: Test testBootClassPathWithEmbeddedDeps(CapsuleTest) @@ -1609,6 +1653,7 @@ CapsuleTest > testParseJavaVersion SKIPPED Running test: Test testReallyExecutableCapsule(CapsuleTest) +Gradle Test Executor 2 finished executing tests. CapsuleTest > testReallyExecutableCapsule SKIPPED Running test: Test testCapsuleJvmArgsParsing(CapsuleTest) @@ -1624,23 +1669,18 @@ CapsuleTest > testSimpleCaplet2 SKIPPED Running test: Test testDependencies1(CapsuleTest) -Gradle Test Executor 2 finished executing tests. CapsuleTest > testDependencies1 SKIPPED Running test: Test testClassPath(CapsuleTest) CapsuleTest > testClassPath SKIPPED Running test: Test testPathingJar(CapsuleTest) -WARNING: A terminally deprecated method in java.lang.System has been called CapsuleTest > testPathingJar SKIPPED -WARNING: System::setSecurityManager has been called by Running test: Test testAgents(CapsuleTest) -org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +Running test: Test testAgents(CapsuleTest) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker CapsuleTest > testAgents SKIPPED Running test: Test testDelete(CapsuleTest) -WARNING: System::setSecurityManager will be removed in a future release CapsuleTest > testDelete SKIPPED Running test: Test testScript(CapsuleTest) @@ -1655,16 +1695,10 @@ Running test: Test testApplicationArtifact(CapsuleTest) CapsuleTest > testApplicationArtifact SKIPPED -Running test: Test testExtendClasspath(NextflowLoaderTest) -Running test: Test testExtendDeps(NextflowLoaderTest) -Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) - -CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED -Finished generating test XML results (0.009 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test -Generating HTML test report... -Finished generating test html results (0.023 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 1.031 secs. -Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) @@ -1674,9 +1708,13 @@ Running test: Test testUpdateJar3(co.paralleluniverse.capsule.JarTest) Running test: Test testReallyExecutableJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddPackage2(co.paralleluniverse.capsule.JarTest) +Finished generating test XML results (0.028 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Generating HTML test report... Running test: Test testAddPackage(co.paralleluniverse.capsule.JarTest) +Finished generating test html results (0.059 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test Running test: Test testFilePrefix(co.paralleluniverse.capsule.JarTest) Running test: Test testStringPrefix(co.paralleluniverse.capsule.JarTest) +:capsule:test (Thread[Task worker for ':' Thread 11,5,main]) completed. Took 3.601 secs. Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) @@ -1685,12 +1723,12 @@ WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.001 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Finished generating test XML results (0.002 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.003 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 1.71 secs. +Finished generating test html results (0.009 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[Task worker for ':',5,main]) completed. Took 4.647 secs. -BUILD SUCCESSFUL in 9s +BUILD SUCCESSFUL in 19s 11 actionable tasks: 4 executed, 7 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -1722,12 +1760,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/738221/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2039631 and its subdirectories -I: Current time: Wed Jun 25 08:13:30 -12 2025 -I: pbuilder-time-stamp: 1750882410 +I: removing directory /srv/workspace/pbuilder/738221 and its subdirectories +I: Current time: Fri May 24 03:54:32 +14 2024 +I: pbuilder-time-stamp: 1716472472