Diff of the two buildlogs: -- --- b1/build.log 2024-05-04 02:41:41.962206956 +0000 +++ b2/build.log 2024-05-04 02:46:24.762155991 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 5 21:03:46 -12 2025 -I: pbuilder-time-stamp: 1749200626 +I: Current time: Sat May 4 16:41:47 +14 2024 +I: pbuilder-time-stamp: 1714790507 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking cif-tools_1.0.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/199477/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 4 02:42 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='de71cbc5fb594a1297ec93b921cbf1c2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='199477' - PS1='# ' - PS2='> ' + INVOCATION_ID=d2015589105846f5864c5b788a67d998 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3599021 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4frKmAEp/pbuilderrc_Wbai --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4frKmAEp/b1 --logfile b1/build.log cif-tools_1.0.7-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4frKmAEp/pbuilderrc_1vsm --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4frKmAEp/b2 --logfile b2/build.log cif-tools_1.0.7-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 4 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/199477/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 3 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -185,7 +217,7 @@ Get: 64 http://deb.debian.org/debian unstable/main amd64 libcifpp-dev amd64 5.0.7.1-3+b1 [86.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libmcfp-dev amd64 1.2.4-1 [16.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 mrc amd64 1.3.10-1 [50.0 kB] -Fetched 59.9 MB in 1s (102 MB/s) +Fetched 59.9 MB in 7s (9108 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19695 files and directories currently installed.) @@ -464,7 +496,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/cif-tools-1.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cif-tools_1.0.7-1_source.changes +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cif-tools-1.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cif-tools_1.0.7-1_source.changes dpkg-buildpackage: info: source package cif-tools dpkg-buildpackage: info: source version 1.0.7-1 dpkg-buildpackage: info: source distribution unstable @@ -513,8 +549,8 @@ -- Found Threads: TRUE -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3") -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: regex --- Configuring done (2.2s) --- Generating done (0.0s) +-- Configuring done (12.7s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -526,173 +562,173 @@ -- Build files have been written to: /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cif-tools-1.0.7 -B/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/pdb2cif.dir/build.make CMakeFiles/pdb2cif.dir/depend +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/mrc-depends-file_pdb2cif.dir/build.make CMakeFiles/mrc-depends-file_pdb2cif.dir/depend +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_pdb2cif.dir/DependInfo.cmake "--color=" make -f CMakeFiles/cif2pdb.dir/build.make CMakeFiles/cif2pdb.dir/depend +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/mrc-depends-file_cif2pdb.dir/build.make CMakeFiles/mrc-depends-file_cif2pdb.dir/depend make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/depend +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif2pdb.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_pdb2cif.dir/DependInfo.cmake "--color=" make -f CMakeFiles/mrc-depends-file_cif-diff.dir/build.make CMakeFiles/mrc-depends-file_cif-diff.dir/depend make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-diff.dir/DependInfo.cmake "--color=" make -f CMakeFiles/cif-grep.dir/build.make CMakeFiles/cif-grep.dir/depend +[ 3%] Generating pdb2cif_rsrc.obj +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/pdb2cif_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif2pdb.dir/DependInfo.cmake "--color=" make -f CMakeFiles/mrc-depends-file_cif-grep.dir/build.make CMakeFiles/mrc-depends-file_cif-grep.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-diff.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/mrc-depends-file_cif-merge.dir/build.make CMakeFiles/mrc-depends-file_cif-merge.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-grep.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/mrc-depends-file_cif-validate.dir/build.make CMakeFiles/mrc-depends-file_cif-validate.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-merge.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/mrc-depends-file_mmCQL.dir/build.make CMakeFiles/mrc-depends-file_mmCQL.dir/depend -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-validate.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_mmCQL.dir/DependInfo.cmake "--color=" -[ 3%] Generating pdb2cif_rsrc.obj [ 7%] Generating cif2pdb_rsrc.obj -[ 10%] Generating cif-diff_rsrc.obj -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/pdb2cif_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/mrc-depends-file_pdb2cif.dir/build.make CMakeFiles/mrc-depends-file_pdb2cif.dir/build /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif2pdb_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -[ 14%] Generating cif-grep_rsrc.obj -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-grep.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/mrc-depends-file_pdb2cif.dir/build.make CMakeFiles/mrc-depends-file_pdb2cif.dir/build make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +[ 10%] Generating cif-diff_rsrc.obj make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/pdb2cif_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/pdb2cif_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -make -f CMakeFiles/mrc-depends-file_cif-diff.dir/build.make CMakeFiles/mrc-depends-file_cif-diff.dir/build -make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -[ 21%] Generating cif-validate_rsrc.obj -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-grep_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make -f CMakeFiles/mrc-depends-file_cif2pdb.dir/build.make CMakeFiles/mrc-depends-file_cif2pdb.dir/build -[ 21%] Generating cif-merge_rsrc.obj +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -make -f CMakeFiles/mrc-depends-file_cif-grep.dir/build.make CMakeFiles/mrc-depends-file_cif-grep.dir/build -[ 25%] Generating mmCQL_rsrc.obj -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-validate_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-merge_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif2pdb_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif2pdb_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +make -f CMakeFiles/mrc-depends-file_cif-diff.dir/build.make CMakeFiles/mrc-depends-file_cif-diff.dir/build +[ 14%] Generating cif-grep_rsrc.obj +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-grep_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-diff_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif2pdb_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif2pdb_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/mrc-depends-file_cif-merge.dir/build.make CMakeFiles/mrc-depends-file_cif-merge.dir/build make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_cif-grep.dir/build.make CMakeFiles/mrc-depends-file_cif-grep.dir/build make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-grep_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-grep_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/mmCQL_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic -make -f CMakeFiles/mrc-depends-file_cif-validate.dir/build.make CMakeFiles/mrc-depends-file_cif-validate.dir/build +make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/depend +[ 14%] Built target mrc-depends-file_pdb2cif make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_cif-merge.dir/build.make CMakeFiles/mrc-depends-file_cif-merge.dir/depend +[ 14%] Built target mrc-depends-file_cif2pdb +[ 14%] Built target mrc-depends-file_cif-diff +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-merge.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/depend +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_cif-validate.dir/build.make CMakeFiles/mrc-depends-file_cif-validate.dir/depend +make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/depend +[ 14%] Built target mrc-depends-file_cif-grep +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_cif-validate.dir/DependInfo.cmake "--color=" +[ 17%] Generating cif-merge_rsrc.obj +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_mmCQL.dir/build.make CMakeFiles/mrc-depends-file_mmCQL.dir/depend make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make -f CMakeFiles/mrc-depends-file_mmCQL.dir/build.make CMakeFiles/mrc-depends-file_mmCQL.dir/build +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-merge_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_cif-merge.dir/build.make CMakeFiles/mrc-depends-file_cif-merge.dir/build +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mrc-depends-file_mmCQL.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-merge_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-merge_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +[ 21%] Generating cif-validate_rsrc.obj +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-validate_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_cif-validate.dir/build.make CMakeFiles/mrc-depends-file_cif-validate.dir/build make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-validate_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/cif-validate_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/mrc-depends-file_mmCQL.dir/build.make CMakeFiles/mrc-depends-file_mmCQL.dir/build +[ 25%] Generating mmCQL_rsrc.obj +/usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/mmCQL_rsrc.obj /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/pdb2cif.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/mmCQL_rsrc.obj -d /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/mmCQL_rsrc.d /usr/share/libcifpp/mmcif_ma.dic /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic +[ 25%] Built target mrc-depends-file_cif-merge make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +Dependencies file "pdb2cif_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/pdb2cif.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target pdb2cif make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -[ 25%] Built target mrc-depends-file_pdb2cif -[ 25%] Built target mrc-depends-file_cif2pdb -[ 25%] Built target mrc-depends-file_cif-grep -[ 25%] Built target mrc-depends-file_cif-diff -[ 25%] Built target mrc-depends-file_cif-merge +make -f CMakeFiles/pdb2cif.dir/build.make CMakeFiles/pdb2cif.dir/build [ 25%] Built target mrc-depends-file_cif-validate +make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' [ 25%] Built target mrc-depends-file_mmCQL -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-merge.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/pdb2cif.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-diff.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mmCQL.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-grep.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif2pdb.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-validate.dir/DependInfo.cmake "--color=" -Dependencies file "cif-merge_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-merge.dir/compiler_depend.internal". -Dependencies file "pdb2cif_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/pdb2cif.dir/compiler_depend.internal". -Dependencies file "cif-diff_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-diff.dir/compiler_depend.internal". -Dependencies file "mmCQL_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mmCQL.dir/compiler_depend.internal". -Dependencies file "cif-grep_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-grep.dir/compiler_depend.internal". +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-diff.dir/DependInfo.cmake "--color=" +[ 28%] Building CXX object CMakeFiles/pdb2cif.dir/src/pdb2cif.cpp.o Dependencies file "cif2pdb_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif2pdb.dir/compiler_depend.internal". -Dependencies file "cif-validate_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-validate.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target cif-diff +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/pdb2cif.dir/src/pdb2cif.cpp.o -MF CMakeFiles/pdb2cif.dir/src/pdb2cif.cpp.o.d -o CMakeFiles/pdb2cif.dir/src/pdb2cif.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/pdb2cif.cpp Consolidate compiler generated dependencies of target cif2pdb -Consolidate compiler generated dependencies of target cif-validate -Consolidate compiler generated dependencies of target cif-grep -Consolidate compiler generated dependencies of target cif-merge -Consolidate compiler generated dependencies of target pdb2cif -Consolidate compiler generated dependencies of target mmCQL -make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +Dependencies file "cif-diff_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-diff.dir/compiler_depend.internal". make -f CMakeFiles/cif2pdb.dir/build.make CMakeFiles/cif2pdb.dir/build +Consolidate compiler generated dependencies of target cif-diff +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu 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"/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-validate.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target cif-validate +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-merge.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/build +[ 35%] Building CXX object CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o make[3]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o -MF CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o.d -o CMakeFiles/cif2pdb.dir/src/cif2pdb.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/cif2pdb.cpp +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu 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'/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +cd /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7 /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mmCQL.dir/DependInfo.cmake "--color=" +[ 46%] Building CXX object CMakeFiles/cif-diff.dir/src/pr-main.cpp.o +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif-diff.dir/src/pr-main.cpp.o -MF CMakeFiles/cif-diff.dir/src/pr-main.cpp.o.d -o CMakeFiles/cif-diff.dir/src/pr-main.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/pr-main.cpp +[ 50%] Building CXX object CMakeFiles/cif-validate.dir/src/cif-validate.cpp.o +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif-validate.dir/src/cif-validate.cpp.o -MF CMakeFiles/cif-validate.dir/src/cif-validate.cpp.o.d -o CMakeFiles/cif-validate.dir/src/cif-validate.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/cif-validate.cpp +[ 53%] Building CXX object CMakeFiles/cif-validate.dir/src/pr-main.cpp.o +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif-validate.dir/src/pr-main.cpp.o -MF CMakeFiles/cif-validate.dir/src/pr-main.cpp.o.d -o CMakeFiles/cif-validate.dir/src/pr-main.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/pr-main.cpp +Dependencies file "cif-grep_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/cif-grep.dir/compiler_depend.internal". +[ 57%] Building CXX object CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o +Consolidate compiler generated dependencies of target cif-grep +/usr/bin/c++ -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_RSRC -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o -MF CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o.d -o CMakeFiles/cif-merge.dir/src/cif-merge.cpp.o -c /build/reproducible-path/cif-tools-1.0.7/src/cif-merge.cpp +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +make -f CMakeFiles/cif-grep.dir/build.make CMakeFiles/cif-grep.dir/build +Dependencies file "mmCQL_rsrc.d" is newer than depends file "/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles/mmCQL.dir/compiler_depend.internal". +Consolidate compiler 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directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +/usr/bin/ld: warning: mmCQL_rsrc.obj: missing .note.GNU-stack section implies executable stack +/usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker /usr/bin/ld: warning: cif2pdb_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker -[ 96%] Built target pdb2cif make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' [ 96%] Built target cif2pdb +make[3]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' +[ 96%] Built target mmCQL [100%] Linking CXX executable cif-grep /usr/bin/cmake -E cmake_link_script CMakeFiles/cif-grep.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/cif-tools-1.0.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/cif-grep.dir/src/cif-grep.cpp.o" "CMakeFiles/cif-grep.dir/src/pr-main.cpp.o" "cif-grep_rsrc.obj" -o cif-grep /usr/lib/x86_64-linux-gnu/libcifpp.so.5.0.7.1 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 @@ -746,10 +782,10 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 + cd obj-x86_64-linux-gnu && make -j20 test ARGS\+=--verbose ARGS\+=-j20 make[1]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j42 +/usr/bin/ctest --force-new-ctest-process --verbose -j20 UpdateCTestConfiguration from :/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -766,7 +802,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/cif-tools/ - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/cif-tools-1.0.7/debian/cif-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/cif-tools-1.0.7/debian/cif-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/cif-tools-1.0.7 -B/build/reproducible-path/cif-tools-1.0.7/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -808,8 +844,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.7-1_amd64.deb'. dpkg-deb: building package 'cif-tools-dbgsym' in '../cif-tools-dbgsym_1.0.7-1_amd64.deb'. +dpkg-deb: building package 'cif-tools' in '../cif-tools_1.0.7-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../cif-tools_1.0.7-1_amd64.buildinfo dpkg-genchanges --build=binary -O../cif-tools_1.0.7-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -817,12 +853,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3599021/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/199477 and its subdirectories -I: Current time: Thu Jun 5 21:04:41 -12 2025 -I: pbuilder-time-stamp: 1749200681 +I: removing directory /srv/workspace/pbuilder/3599021 and its subdirectories +I: Current time: Sat May 4 16:46:23 +14 2024 +I: pbuilder-time-stamp: 1714790783