Diff of the two buildlogs: -- --- b1/build.log 2024-05-11 02:31:59.611537361 +0000 +++ b2/build.log 2024-05-11 02:35:11.723356977 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 10 14:17:17 -12 2024 -I: pbuilder-time-stamp: 1715393837 +I: Current time: Fri Jun 13 22:55:02 +14 2025 +I: pbuilder-time-stamp: 1749804902 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking diamond-aligner_2.1.9-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2939496/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 13 08:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2dc2937fff5849a7b293d55dae026196' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2939496' - PS1='# ' - PS2='> ' + INVOCATION_ID=396edafc4cb3435fb23ecc9436c56118 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3770349 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Tr2UOC7t/pbuilderrc_5DZW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Tr2UOC7t/b1 --logfile b1/build.log diamond-aligner_2.1.9-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Tr2UOC7t/pbuilderrc_BuY5 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Tr2UOC7t/b2 --logfile b2/build.log diamond-aligner_2.1.9-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 9 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2939496/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 11 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -168,7 +200,7 @@ Get: 53 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] -Fetched 36.6 MB in 4s (10.4 MB/s) +Fetched 36.6 MB in 0s (124 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19700 files and directories currently installed.) @@ -403,7 +435,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/diamond-aligner-2.1.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../diamond-aligner_2.1.9-1_source.changes dpkg-buildpackage: info: source package diamond-aligner dpkg-buildpackage: info: source version 2.1.9-1 dpkg-buildpackage: info: source distribution unstable @@ -459,8 +495,8 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (7.0s) --- Generating done (0.2s) +-- Configuring done (1.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -476,7 +512,7 @@ -- Build files have been written to: /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' dh_auto_build - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.9 -B/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -486,80 +522,80 @@ make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/depend make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/depend make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' -cd /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu/CMakeFiles/arch_generic.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' cd /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu/CMakeFiles/arch_sse4_1.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' +cd /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9 /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu /build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu/CMakeFiles/arch_avx2.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' -make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' +make -f CMakeFiles/arch_sse4_1.dir/build.make CMakeFiles/arch_sse4_1.dir/build +make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' make -f CMakeFiles/arch_avx2.dir/build.make CMakeFiles/arch_avx2.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' -make -f CMakeFiles/arch_generic.dir/build.make CMakeFiles/arch_generic.dir/build make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' -[ 1%] Building CXX object CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/search/stage1_2.cpp +[ 1%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o [ 1%] Building CXX object CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -[ 1%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -[ 1%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o +[ 2%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o +[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o +[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -MF CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/dp/swipe/banded_3frame_swipe.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/swipe/banded_3frame_swipe.cpp +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/dp/scan_diags.cpp +[ 3%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o +[ 5%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/pfscan/pfscan.cpp.o +[ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/anchored_wrapper.cpp.o +[ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/pfscan/pfscan.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time 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-Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/search/stage1_2.cpp +[ 5%] Building CXX object CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o +[ 6%] Building CXX object CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong 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/build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] @@ -804,6 +838,8 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ +[ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter 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-Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_regression.cpp +[ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_sim.cpp +[ 65%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_basic.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstat.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] @@ -841,8 +883,6 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ -[ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -MF CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o.d -o CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/sls_alp_regression.cpp In file included from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:39, from /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_localmaxstatutil.cpp:39: /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogprob.hpp:110:37: warning: ‘virtual Njn::DynProgProb& Njn::DynProgProb::operator=(const Njn::DynProgProb&)’ was hidden [-Woverloaded-virtual=] @@ -863,12 +903,7 @@ /build/reproducible-path/diamond-aligner-2.1.9/src/lib/alp/njn_dynprogproblim.hpp:101:29: note: by ‘Njn::DynProgProbLim::copy’ 101 | virtual inline void copy ( | ^~~~ -[ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o -/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/matrix_adjust.cpp [ 76%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/matrix_adjust_eigen.cpp +[ 76%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o +/usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -MF CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o.d -o CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/stats/matrix_adjust.cpp [ 76%] Building CXX object CMakeFiles/diamond.dir/src/data/index.cpp.o /usr/bin/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/build/reproducible-path/diamond-aligner-2.1.9/src/lib -g -O2 -ffile-prefix-map=/build/reproducible-path/diamond-aligner-2.1.9=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fuse-ld=gold -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFiles/diamond.dir/src/data/index.cpp.o -MF CMakeFiles/diamond.dir/src/data/index.cpp.o.d -o CMakeFiles/diamond.dir/src/data/index.cpp.o -c /build/reproducible-path/diamond-aligner-2.1.9/src/data/index.cpp [ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o @@ -1020,489 +1056,489 @@ make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9' -cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games sh diamond-calls -+ mktemp -d -+ TESTDIR=/tmp/tmp.L3iLxtXbeE -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.L3iLxtXbeE/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive +cd debian/tests && PATH=/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path sh diamond-calls +++ mktemp -d ++ TESTDIR=/tmp/tmp.8K7TbXoqsL ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.8K7TbXoqsL/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.005s] -Masking queries... [0.031s] +Loading query sequences... [0s] +Masking queries... [0.005s] Algorithm: Double-indexed -Building query histograms... [0.071s] +Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.022s] -Initializing temporary storage... [0.013s] -Building reference histograms... [0.058s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.02s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.014s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.036s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.022s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.037s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.036s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.026s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.03s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.039s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.013s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.008s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.036s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.038s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.021s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.025s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.035s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.022s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.031s] -Computing hash join... [0.022s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.022s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.024s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.026s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.033s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.006s] -Building query seed array... [0.017s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.02s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.007s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.006s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.799s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.264s] -Deallocating buffers... [0.011s] +Computing alignments... [0.105s] +Deallocating buffers... [0s] Loading trace points... [0s] - [1.083s] + [0.109s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -1512,489 +1548,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.448s +Total time = 0.666s Reported 77 pairwise alignments, 77 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.L3iLxtXbeE/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.8K7TbXoqsL/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 -Opening the database... [0.008s] +Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.034s] +Masking queries... [0.008s] Algorithm: Double-indexed -Building query histograms... [0.056s] +Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.027s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.058s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.017s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.018s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.025s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.008s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.032s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.025s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.034s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.029s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.013s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.032s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.039s] -Building query seed array... [0.026s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.006s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.036s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.029s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.024s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.013s] -Building query seed array... [0.026s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.011s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.021s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.034s] -Building query seed array... [0.034s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.024s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.017s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.021s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.021s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.025s] -Computing hash join... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.017s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.005s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.024s] -Computing hash join... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.016s] -Deallocating memory... [0.001s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.024s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.019s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.012s] -Computing hash join... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.029s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.016s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.004s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.035s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.042s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.034s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.034s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.114s] +Computing alignments... Loading trace points... [0.001s] Sorting trace points... [0s] -Computing alignments... [0.074s] -Deallocating buffers... [0.005s] +Computing alignments... [0.016s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.196s] + [0.019s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2004,17 +2040,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.65s +Total time = 0.557s Reported 41 pairwise alignments, 41 HSPs. 15 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.L3iLxtXbeE/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.8K7TbXoqsL/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -2022,471 +2058,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.01s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.011s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.014s] -Initializing temporary storage... [0.003s] -Building reference histograms... [0.06s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.021s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.008s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.01s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.032s] -Building query seed array... [0.027s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.029s] -Building query seed array... [0.024s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.03s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.023s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.029s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.029s] -Building query seed array... [0.02s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] -Deallocating memory... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.024s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] -Deallocating memory... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.021s] -Computing hash join... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.023s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.021s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.014s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.04s] -Building query seed array... [0.026s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.021s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.026s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.015s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.004s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.008s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.006s] -Building query seed array... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.022s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.004s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.016s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.029s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.03s] -Building query seed array... [0.017s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.297s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.139s] -Deallocating buffers... [0.004s] +Computing alignments... [0.043s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.442s] + [0.047s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2496,17 +2532,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.29s +Total time = 0.504s Reported 64 pairwise alignments, 64 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.L3iLxtXbeE/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.8K7TbXoqsL/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -2514,471 +2550,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.047s] +Masking queries... [0.008s] Algorithm: Double-indexed -Building query histograms... [0.034s] +Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.034s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.043s] -Building query seed array... [0.022s] -Computing hash join... [0.025s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.038s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.042s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.006s] -Computing hash join... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.018s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] -Deallocating memory... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.016s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.033s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.028s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.024s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.026s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.017s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.034s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.024s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.029s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.022s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.023s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.014s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.005s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.028s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.025s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.028s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.006s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.01s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.033s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.021s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.015s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.022s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.029s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.008s] -Building query seed array... [0.005s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.014s] -Computing hash join... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.018s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.029s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.1s] -Sorting trace points... [0.001s] -Computing alignments... [0.269s] -Deallocating buffers... [0.006s] +Computing alignments... Loading trace points... [0.003s] +Sorting trace points... [0s] +Computing alignments... [0.083s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.383s] + [0.088s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -2988,17 +3024,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.662s +Total time = 0.53s Reported 133 pairwise alignments, 133 HSPs. 109 queries aligned. -+ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.L3iLxtXbeE/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.8K7TbXoqsL/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -3006,471 +3042,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.013s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.017s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.009s] +Masking reference... [0.003s] Initializing temporary storage... [0s] -Building reference histograms... [0.06s] +Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.021s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.02s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.026s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.03s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.035s] -Building query seed array... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.006s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.018s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.004s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.028s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.021s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.025s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.039s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.028s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.024s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.032s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.026s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.022s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.023s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.056s] -Building query seed array... [0.032s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.023s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.026s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.035s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.037s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.023s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.011s] -Computing hash join... [0.026s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.013s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.034s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.026s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.021s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.022s] -Computing hash join... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.018s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.129s] +Computing alignments... Loading trace points... [0.002s] Sorting trace points... [0s] -Computing alignments... [0.155s] -Deallocating buffers... [0.004s] +Computing alignments... [0.043s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.292s] + [0.046s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3480,489 +3516,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.012s +Total time = 0.508s Reported 62 pairwise alignments, 62 HSPs. 33 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.L3iLxtXbeE/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.8K7TbXoqsL/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 -Opening the database... [0.001s] +Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.041s] +Masking queries... [0.008s] Algorithm: Double-indexed -Building query histograms... [0.056s] +Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.014s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.021s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.06s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.021s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.03s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.035s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.021s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.033s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.028s] -Building query seed array... [0.022s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.034s] -Building query seed array... [0.02s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.038s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.02s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.035s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.013s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.013s] -Deallocating memory... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.016s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.015s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.025s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.03s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.029s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.017s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.018s] -Computing hash join... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.013s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.004s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.017s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.024s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.025s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.024s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.029s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.005s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.03s] -Building query seed array... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.026s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.016s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.011s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.029s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.023s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.024s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.025s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.073s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.261s] -Deallocating buffers... [0.003s] -Loading trace points... [0.001s] - [0.341s] +Computing alignments... [0.082s] +Deallocating buffers... [0s] +Loading trace points... [0s] + [0.087s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -3972,17 +4008,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.926s +Total time = 0.547s Reported 131 pairwise alignments, 131 HSPs. 109 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.L3iLxtXbeE/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.8K7TbXoqsL/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) @@ -3990,471 +4026,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.011s] +Masking queries... [0s] Algorithm: Double-indexed -Building query histograms... [0.022s] +Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.018s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.048s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.009s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.014s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.005s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.004s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.016s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.016s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.025s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.029s] -Building query seed array... [0.02s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.022s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.029s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.033s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.013s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.018s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.024s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.005s] -Building query seed array... [0.044s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.02s] +Building reference seed array... [0.002s] Building query seed array... [0s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.032s] -Building query seed array... [0.02s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.034s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.019s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.011s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.015s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.01s] -Building query seed array... [0.013s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.012s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.035s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.023s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.022s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.013s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.016s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.029s] -Building query seed array... [0.03s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.03s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.035s] +Computing alignments... Loading trace points... [0s] Sorting trace points... [0s] -Computing alignments... [0.011s] -Deallocating buffers... [0.008s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.056s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4464,17 +4500,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.325s +Total time = 0.36s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.L3iLxtXbeE/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.8K7TbXoqsL/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -4482,471 +4518,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.024s] +Masking queries... [0.008s] Algorithm: Double-indexed -Building query histograms... [0.057s] +Building query histograms... [0.009s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.026s] +Masking reference... [0s] +Initializing temporary storage... [0s] +Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.016s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.016s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.018s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.015s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.016s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.02s] -Computing hash join... [0.026s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.029s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.007s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0.03s] -Computing hash join... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.012s] -Building query seed array... [0.026s] -Computing hash join... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.013s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.026s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.009s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.034s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.021s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.012s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.015s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.026s] +Building reference seed array... [0s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.009s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.006s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.006s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.008s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.025s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.005s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.004s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.028s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.02s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.026s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.031s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.019s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.031s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.005s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.013s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.015s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.022s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.034s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.002s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.022s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.012s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.002s] Computing hash join... [0s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.004s] -Computing hash join... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.018s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.017s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.038s] -Building query seed array... [0.014s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.021s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.001s] -Deallocating memory... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.033s] -Computing hash join... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.014s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.033s] +Computing alignments... Loading trace points... [0.001s] Sorting trace points... [0s] -Computing alignments... [0.015s] -Deallocating buffers... [0.007s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.06s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -4954,19 +4990,19 @@ Loading query sequences... [0s] Closing the input file... [0s] Closing the output file... [0s] -Closing the database... [0.001s] +Closing the database... [0s] Cleaning up... [0s] -Total time = 4.909s +Total time = 0.36s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.L3iLxtXbeE/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.8K7TbXoqsL/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -4974,491 +5010,491 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.035s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.041s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.015s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.058s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.01s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.035s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.025s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.029s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.029s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.034s] -Building query seed array... [0.023s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.006s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.025s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.035s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.029s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.039s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.022s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.043s] -Building query seed array... [0.053s] -Computing hash join... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.029s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.02s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.032s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.015s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.035s] -Building query seed array... [0.031s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.017s] -Computing hash join... [0.026s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.039s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.004s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.004s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.002s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.002s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.014s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.006s] -Building query seed array... [0.003s] -Computing hash join... [0.027s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.015s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.025s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.282s] -Sorting trace points... [0.001s] -Computing alignments... [0.526s] -Deallocating buffers... [0.007s] +Computing alignments... Loading trace points... [0.002s] +Sorting trace points... [0s] +Computing alignments... [0.122s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.82s] + [0.126s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0.001s] +Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.576s +Total time = 0.615s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.L3iLxtXbeE/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.8K7TbXoqsL/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -5466,491 +5502,491 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.024s] +Masking queries... [0.005s] Algorithm: Double-indexed -Building query histograms... [0.04s] +Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.034s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.025s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.018s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.028s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.039s] -Building query seed array... [0.025s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.029s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.025s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.024s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.024s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.006s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.031s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.024s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] Computing hash join... [0s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.009s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.009s] -Building query seed array... [0.025s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] Computing hash join... [0s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.018s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.025s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.007s] -Computing hash join... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.016s] -Deallocating memory... [0.001s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.005s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.024s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.034s] -Building query seed array... [0.026s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.021s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.036s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.024s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.011s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.687s] -Deallocating buffers... [0.008s] +Computing alignments... [0.247s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.776s] + [0.251s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0.002s] +Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.445s +Total time = 0.74s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.L3iLxtXbeE/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.8K7TbXoqsL/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -5958,471 +5994,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.029s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.035s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.014s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.058s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] -Deallocating memory... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.035s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.035s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.029s] -Building query seed array... [0.027s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.019s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.041s] -Building query seed array... [0.029s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.016s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.032s] -Building query seed array... [0.017s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.015s] -Deallocating memory... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.009s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.017s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.013s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.025s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.025s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.002s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.022s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.007s] -Deallocating memory... [0.001s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.024s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.018s] -Deallocating memory... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.036s] -Building query seed array... [0.034s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.021s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.013s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.035s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.009s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.003s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.007s] -Building query seed array... [0.003s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.004s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.006s] -Building query seed array... [0.003s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.002s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.331s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.491s] -Deallocating buffers... [0.003s] +Computing alignments... [0.124s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.828s] + [0.128s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -6432,17 +6468,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.332s +Total time = 0.611s Reported 489 pairwise alignments, 489 HSPs. 32 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.L3iLxtXbeE/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.8K7TbXoqsL/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -6450,491 +6486,491 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.022s] +Masking queries... [0.005s] Algorithm: Double-indexed -Building query histograms... [0.057s] +Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] -Initializing temporary storage... [0.002s] -Building reference histograms... [0.045s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.009s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.031s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.025s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.035s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.023s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.019s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.027s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.034s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.017s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.018s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.026s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.042s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.024s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.028s] -Building query seed array... [0.026s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.041s] -Building query seed array... [0.034s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.029s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.03s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.025s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.354s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [1.155s] -Deallocating buffers... [0.007s] +Computing alignments... [0.268s] +Deallocating buffers... [0s] Loading trace points... [0s] - [1.52s] + [0.273s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] Loading query sequences... [0s] Closing the input file... [0s] -Closing the output file... [0.001s] +Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 7.343s +Total time = 0.77s Reported 1173 pairwise alignments, 1173 HSPs. 72 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.L3iLxtXbeE/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.8K7TbXoqsL/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) @@ -6942,471 +6978,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.013s] +Masking queries... [0s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.03s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.082s] +Masking reference... [0.003s] +Initializing temporary storage... [0s] +Building reference histograms... [0.01s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.025s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.037s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.006s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.033s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.013s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.019s] -Deallocating memory... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.036s] -Building query seed array... [0.022s] -Computing hash join... [0.002s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.004s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.005s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.005s] +Building reference seed array... [0.003s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.005s] -Building query seed array... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.005s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.002s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.014s] -Building query seed array... [0.002s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.028s] -Building query seed array... [0.028s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.015s] +Building reference seed array... [0.002s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.034s] -Building query seed array... [0.002s] +Building reference seed array... [0.003s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.039s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.002s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.028s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.005s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.01s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.01s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.028s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.018s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.029s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.017s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.036s] -Building query seed array... [0.022s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.016s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.032s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.009s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.028s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.021s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.003s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.021s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.02s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.029s] -Building query seed array... [0.037s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.028s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.016s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.026s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.008s] +Building reference seed array... [0.003s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.034s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.002s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.035s] +Computing alignments... Loading trace points... [0s] Sorting trace points... [0s] -Computing alignments... [0.007s] -Deallocating buffers... [0.007s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.051s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7416,489 +7452,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.117s +Total time = 0.366s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.L3iLxtXbeE/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.8K7TbXoqsL/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.004s] -Masking queries... [0.024s] +Loading query sequences... [0s] +Masking queries... [0.005s] Algorithm: Double-indexed -Building query histograms... [0.052s] +Building query histograms... [0.01s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.022s] +Masking reference... [0s] +Initializing temporary storage... [0s] +Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.036s] -Building query seed array... [0.032s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.018s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.017s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.022s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.021s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.032s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.009s] -Computing hash join... [0.022s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.034s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.027s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.025s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.026s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.02s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.013s] -Building query seed array... [0.015s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.02s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.021s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.035s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.01s] -Building query seed array... [0.025s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.015s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.019s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.039s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.003s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.002s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.035s] +Computing alignments... Loading trace points... [0s] Sorting trace points... [0s] -Computing alignments... [0.019s] -Deallocating buffers... [0.006s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.063s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -7908,17 +7944,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 5.265s +Total time = 0.364s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.L3iLxtXbeE/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.8K7TbXoqsL/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -7926,471 +7962,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.032s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.025s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.011s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.03s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.008s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.022s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.021s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.033s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.01s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.032s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.018s] -Computing hash join... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.028s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.011s] -Building query seed array... [0.017s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.029s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.015s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.031s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.024s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.042s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.019s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.049s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.03s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.014s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.06s] -Building query seed array... [0.015s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.032s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.019s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.051s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.039s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.028s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.02s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.018s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.011s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.004s] -Computing hash join... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.006s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] -Computing hash join... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.002s] -Building query seed array... [0.014s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.02s] -Computing hash join... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.013s] +Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.256s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.375s] -Deallocating buffers... [0.001s] +Computing alignments... [0.088s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.633s] + [0.092s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8400,489 +8436,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.02s +Total time = 0.615s Reported 390 pairwise alignments, 390 HSPs. 39 queries aligned. -+ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.L3iLxtXbeE/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.8K7TbXoqsL/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) Block size = 2000000000 Opening the input file... [0s] Opening the output file... [0s] -Loading query sequences... [0.008s] -Masking queries... [0.044s] +Loading query sequences... [0s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.032s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] -Initializing temporary storage... [0.002s] -Building reference histograms... [0.038s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.025s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.004s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.003s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.068s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.016s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.031s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.027s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.036s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.029s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.02s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.058s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.01s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.029s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.011s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.031s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.039s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.016s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.025s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.026s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.011s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.018s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.006s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.007s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.018s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.018s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.022s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.019s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.019s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.018s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.022s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.023s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.04s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.027s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.02s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.002s] -Building query seed array... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.03s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.047s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.025s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.022s] +Building reference seed array... [0.001s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.002s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.379s] +Computing alignments... Loading trace points... [0.003s] Sorting trace points... [0s] -Computing alignments... [0.362s] -Deallocating buffers... [0.004s] +Computing alignments... [0.093s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.748s] + [0.098s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -8892,17 +8928,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 6.286s +Total time = 0.619s Reported 390 pairwise alignments, 390 HSPs. 40 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.L3iLxtXbeE/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.8K7TbXoqsL/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) @@ -8910,471 +8946,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.01s] +Masking queries... [0s] Algorithm: Double-indexed -Building query histograms... [0.001s] -Seeking in database... [0.003s] +Building query histograms... [0s] +Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.007s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.015s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.003s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.01s] -Building query seed array... [0.027s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.042s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.035s] -Searching alignments... [0.031s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.026s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.027s] -Computing hash join... [0.023s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.047s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.015s] -Computing hash join... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.022s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.009s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.018s] -Computing hash join... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.011s] +Building reference seed array... [0.001s] Building query seed array... [0s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.031s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.019s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.007s] -Computing hash join... [0.047s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.013s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.007s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.015s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.016s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.016s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.035s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.075s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.012s] -Computing hash join... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.015s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.02s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.009s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.016s] -Building query seed array... [0.014s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.031s] +Computing alignments... Loading trace points... [0.001s] Sorting trace points... [0s] -Computing alignments... [0.015s] -Deallocating buffers... [0.008s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.056s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9384,489 +9420,489 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.886s +Total time = 0.265s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.L3iLxtXbeE/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.8K7TbXoqsL/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) Block size = 2000000000 -Opening the input file... [0.008s] +Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.023s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.019s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.003s] -Initializing temporary storage... [0.057s] -Building reference histograms... [0.032s] +Masking reference... [0s] +Initializing temporary storage... [0s] +Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.017s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.002s] -Computing hash join... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.011s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.021s] -Building query seed array... [0.002s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.019s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.006s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.024s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.023s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.02s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.017s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.026s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.024s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.055s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.02s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.024s] -Building query seed array... [0.026s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.019s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.021s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.023s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.026s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.018s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.022s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.016s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.003s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.006s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.002s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.003s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.003s] -Computing hash join... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.014s] -Building query seed array... [0.026s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.014s] -Building query seed array... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] -Deallocating memory... [0.001s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.009s] -Building query seed array... [0.009s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.005s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. Building reference seed array... [0s] -Building query seed array... [0.007s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.014s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.017s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.002s] +Computing alignments... Loading trace points... [0.001s] Sorting trace points... [0s] -Computing alignments... [0.003s] +Computing alignments... [0.001s] Deallocating buffers... [0s] Loading trace points... [0s] - [0.01s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -9876,17 +9912,17 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 4.25s +Total time = 0.274s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.L3iLxtXbeE/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.8K7TbXoqsL/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) @@ -9894,491 +9930,491 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.008s] +Masking queries... [0s] Algorithm: Double-indexed -Building query histograms... [0.016s] +Building query histograms... [0s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.004s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.012s] +Masking reference... [0.001s] +Initializing temporary storage... [0s] +Building reference histograms... [0.005s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.029s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.023s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.022s] +Building reference seed array... [0.001s] Building query seed array... [0s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.012s] +Building reference seed array... [0.001s] Building query seed array... [0s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.004s] +Building reference seed array... [0.001s] Building query seed array... [0s] -Computing hash join... [0.004s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.035s] -Building query seed array... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.016s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.009s] -Building query seed array... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.019s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.001s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.024s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.017s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.014s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.015s] -Building query seed array... [0.035s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.019s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.032s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.022s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.047s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.01s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.018s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.024s] -Building query seed array... [0.027s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.012s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.015s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.038s] -Building query seed array... [0.011s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.029s] -Building query seed array... [0.024s] -Computing hash join... [0.016s] -Masking low complexity seeds... [0.009s] -Searching alignments... [0.021s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.029s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.035s] -Building query seed array... [0.031s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.012s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.014s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.012s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. -Building reference seed array... [0.009s] -Building query seed array... [0.004s] -Computing hash join... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] -Deallocating memory... [0.002s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.004s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.009s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.003s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.003s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] -Deallocating memory... [0.001s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.009s] -Building query seed array... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.008s] -Building query seed array... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.002s] -Deallocating memory... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] +Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.014s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.012s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.021s] -Building query seed array... [0.002s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.008s] -Building query seed array... [0.001s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.009s] -Building query seed array... [0.018s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.008s] -Building query seed array... [0.003s] -Computing hash join... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.028s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.004s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.008s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.013s] -Searching alignments... [0.001s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.002s] +Building reference seed array... [0.001s] Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.013s] -Building query seed array... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. -Building reference seed array... [0.013s] -Building query seed array... [0.001s] -Computing hash join... [0.002s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.005s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.012s] -Computing hash join... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.031s] -Building query seed array... [0.012s] -Computing hash join... [0.02s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.017s] -Building query seed array... [0.023s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.001s] -Computing hash join... [0.018s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.017s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.031s] -Building query seed array... [0.017s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.019s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.019s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.031s] -Building query seed array... [0.003s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.017s] -Building query seed array... [0.003s] +Building reference seed array... [0.001s] +Building query seed array... [0s] Computing hash join... [0s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.004s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.02s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.01s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.011s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.01s] -Building query seed array... [0.003s] -Computing hash join... [0.009s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.009s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.016s] -Building query seed array... [0.019s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.007s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.005s] -Computing hash join... [0.002s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.005s] -Building query seed array... [0.013s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.004s] -Searching alignments... [0.015s] +Building reference seed array... [0.001s] +Building query seed array... [0s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.024s] +Computing alignments... Loading trace points... [0s] Sorting trace points... [0s] -Computing alignments... [0.003s] -Deallocating buffers... [0.005s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.038s] + [0.002s] Deallocating reference... [0s] -Loading reference sequences... [0.001s] +Loading reference sequences... [0s] Deallocating buffers... [0s] Deallocating queries... [0s] -Loading query sequences... [0.001s] -Closing the input file... [0.002s] +Loading query sequences... [0s] +Closing the input file... [0s] Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.916s +Total time = 0.263s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.L3iLxtXbeE/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive ++ diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.8K7TbXoqsL/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen Documentation, support and updates available at http://www.diamondsearch.org Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) #CPU threads: 1 Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) -Temporary directory: /tmp/tmp.L3iLxtXbeE +Temporary directory: /tmp/tmp.8K7TbXoqsL #Target sequences to report alignments for: 25 Opening the database... [0s] Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) @@ -10386,471 +10422,471 @@ Opening the input file... [0s] Opening the output file... [0s] Loading query sequences... [0s] -Masking queries... [0.017s] +Masking queries... [0.006s] Algorithm: Double-indexed -Building query histograms... [0.036s] +Building query histograms... [0.005s] Seeking in database... [0s] Loading reference sequences... [0s] -Masking reference... [0.012s] -Initializing temporary storage... [0.001s] -Building reference histograms... [0.016s] +Masking reference... [0s] +Initializing temporary storage... [0s] +Building reference histograms... [0s] Allocating buffers... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0.001s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.019s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.019s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.018s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. -Building reference seed array... [0.003s] -Building query seed array... [0.01s] -Computing hash join... [0.014s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.015s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.032s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.019s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.005s] -Searching alignments... [0.004s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. -Building reference seed array... [0.006s] -Building query seed array... [0.007s] -Computing hash join... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. -Building reference seed array... [0.029s] -Building query seed array... [0.023s] -Computing hash join... [0.004s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. -Building reference seed array... [0.018s] -Building query seed array... [0.012s] -Computing hash join... [0.017s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. -Building reference seed array... [0.016s] -Building query seed array... [0.02s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.005s] -Computing hash join... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.026s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.022s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. -Building reference seed array... [0.003s] -Building query seed array... [0.018s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.015s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. -Building reference seed array... [0.028s] -Building query seed array... [0.027s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. -Building reference seed array... [0.02s] -Building query seed array... [0.028s] -Computing hash join... [0.008s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.015s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. -Building reference seed array... [0.023s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. -Building reference seed array... [0.019s] -Building query seed array... [0.024s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. -Building reference seed array... [0.023s] -Building query seed array... [0.024s] -Computing hash join... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.02s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. -Building reference seed array... [0.017s] -Building query seed array... [0.011s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. -Building reference seed array... [0.025s] -Building query seed array... [0.023s] -Computing hash join... [0.006s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. -Building reference seed array... [0.019s] -Building query seed array... [0.009s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. -Building reference seed array... [0.014s] -Building query seed array... [0.018s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.014s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. -Building reference seed array... [0.016s] -Building query seed array... [0.026s] -Computing hash join... [0.013s] -Masking low complexity seeds... [0.002s] -Searching alignments... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.019s] -Computing hash join... [0.009s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. -Building reference seed array... [0.022s] -Building query seed array... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. -Building reference seed array... [0.018s] -Building query seed array... [0.02s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.02s] -Searching alignments... [0.011s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. -Building reference seed array... [0.026s] -Building query seed array... [0.016s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.01s] -Searching alignments... [0.01s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. -Building reference seed array... [0.02s] -Building query seed array... [0.02s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. -Building reference seed array... [0.027s] -Building query seed array... [0.027s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. -Building reference seed array... [0.023s] -Building query seed array... [0.027s] -Computing hash join... [0.007s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.026s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. -Building reference seed array... [0.015s] -Building query seed array... [0.019s] -Computing hash join... [0.012s] -Masking low complexity seeds... [0.011s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. -Building reference seed array... [0.015s] -Building query seed array... [0.023s] -Computing hash join... [0.001s] -Masking low complexity seeds... [0.014s] -Searching alignments... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. -Building reference seed array... [0.012s] -Building query seed array... [0.027s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.016s] -Searching alignments... [0.008s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. -Building reference seed array... [0.024s] -Building query seed array... [0.023s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.025s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.004s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.008s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. -Building reference seed array... [0.011s] -Building query seed array... [0.003s] -Computing hash join... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. -Building reference seed array... [0.004s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.004s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.012s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. -Building reference seed array... [0.015s] -Building query seed array... [0.004s] -Computing hash join... [0.01s] -Masking low complexity seeds... [0.001s] -Searching alignments... [0.001s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. -Building reference seed array... [0.017s] -Building query seed array... [0.006s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.01s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. -Building reference seed array... [0.011s] -Building query seed array... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.023s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. -Building reference seed array... [0.007s] -Building query seed array... [0.006s] -Computing hash join... [0.005s] -Masking low complexity seeds... [0.007s] -Searching alignments... [0.013s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.007s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. -Building reference seed array... [0.019s] -Building query seed array... [0.017s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.005s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. -Building reference seed array... [0.027s] -Building query seed array... [0.023s] -Computing hash join... [0.015s] -Masking low complexity seeds... [0.015s] -Searching alignments... [0.01s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. -Building reference seed array... [0.019s] -Building query seed array... [0.031s] -Computing hash join... [0.011s] -Masking low complexity seeds... [0.008s] -Searching alignments... [0.012s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. -Building reference seed array... [0.001s] -Building query seed array... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. Building reference seed array... [0s] -Building query seed array... [0.002s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.002s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. -Building reference seed array... [0.001s] -Building query seed array... [0.002s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.001s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. -Building reference seed array... [0.001s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] Masking low complexity seeds... [0s] -Searching alignments... [0.011s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. -Building reference seed array... [0.022s] -Building query seed array... [0.011s] -Computing hash join... [0.003s] -Masking low complexity seeds... [0.003s] -Searching alignments... [0.007s] +Building reference seed array... [0s] +Building query seed array... [0.001s] +Computing hash join... [0s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. -Building reference seed array... [0.002s] -Building query seed array... [0.003s] +Building reference seed array... [0s] +Building query seed array... [0.001s] Computing hash join... [0s] -Masking low complexity seeds... [0.006s] -Searching alignments... [0.001s] +Masking low complexity seeds... [0s] +Searching alignments... [0s] Deallocating memory... [0s] Deallocating buffers... [0s] Clearing query masking... [0s] -Computing alignments... Loading trace points... [0.093s] +Computing alignments... Loading trace points... [0s] Sorting trace points... [0s] -Computing alignments... [0.011s] -Deallocating buffers... [0.007s] +Computing alignments... [0.001s] +Deallocating buffers... [0s] Loading trace points... [0s] - [0.114s] + [0.002s] Deallocating reference... [0s] Loading reference sequences... [0s] Deallocating buffers... [0s] @@ -10860,15 +10896,15 @@ Closing the output file... [0s] Closing the database... [0s] Cleaning up... [0s] -Total time = 3.833s +Total time = 0.265s Reported 1 pairwise alignments, 1 HSPs. 1 queries aligned. -+ rm -rf /tmp/tmp.L3iLxtXbeE ++ rm -rf /tmp/tmp.8K7TbXoqsL make[1]: Leaving directory '/build/reproducible-path/diamond-aligner-2.1.9' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/diamond-aligner/ - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/diamond-aligner-2.1.9/debian/diamond-aligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/diamond-aligner-2.1.9 -B/build/reproducible-path/diamond-aligner-2.1.9/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -10909,12 +10945,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3770349/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2939496 and its subdirectories -I: Current time: Fri May 10 14:31:58 -12 2024 -I: pbuilder-time-stamp: 1715394718 +I: removing directory /srv/workspace/pbuilder/3770349 and its subdirectories +I: Current time: Fri Jun 13 22:58:10 +14 2025 +I: pbuilder-time-stamp: 1749805090