Diff of the two buildlogs: -- --- b1/build.log 2024-04-27 15:21:21.537452163 +0000 +++ b2/build.log 2024-04-27 15:27:08.654619319 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri May 30 09:38:26 -12 2025 -I: pbuilder-time-stamp: 1748641106 +I: Current time: Sun Apr 28 05:21:26 +14 2024 +I: pbuilder-time-stamp: 1714231286 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -38,51 +38,83 @@ dpkg-source: info: applying gatbCoreCompileMinia.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3987523/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 27 15:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2f817a80605c4377a0f53cdac5dd3871' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3987523' - PS1='# ' - PS2='> ' + INVOCATION_ID=5e273003685943ad8b68d714d4738838 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=874836 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z93lprtE/pbuilderrc_9ZHt --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z93lprtE/b1 --logfile b1/build.log gatb-core_1.4.2+dfsg-13.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.z93lprtE/pbuilderrc_sD7S --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.z93lprtE/b2 --logfile b2/build.log gatb-core_1.4.2+dfsg-13.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 29 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3987523/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 26 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -284,7 +316,7 @@ Get: 148 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libjsoncpp-dev amd64 1.9.5-6+b2 [24.8 kB] -Fetched 132 MB in 1s (107 MB/s) +Fetched 132 MB in 1s (128 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19694 files and directories currently installed.) @@ -904,7 +936,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-13_source.changes +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-13_source.changes dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-13 dpkg-buildpackage: info: source distribution unstable @@ -985,7 +1021,7 @@ This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot --- Configuring done (2.4s) +-- Configuring done (1.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1012,48 +1048,48 @@ make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp -[ 2%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp -[ 2%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp -[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o -[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o +[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src 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copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o +[ 3%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json/ make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 5%] Built target thirdparty_copy -[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); @@ -1070,84 +1106,36 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bcalm_algo.cpp -[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp -[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp -[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bcalm2/bglue_algo.cpp -[ 7%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp -[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Frontline.cpp.o -c 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] - 608 | std::not1(std::ptr_fun(std::isspace)))); - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -In file included from /usr/include/c++/13/bits/refwrap.h:39, - from /usr/include/c++/13/vector:68, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: -/usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here - 1126 | ptr_fun(_Result (*__x)(_Arg)) - | ^~~~~~~ -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] - 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here - 1126 | ptr_fun(_Result (*__x)(_Arg)) - | ^~~~~~~ -[ 14%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c 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CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp -[ 16%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1166,292 +1154,288 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c 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+/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] + 608 | std::not1(std::ptr_fun(std::isspace)))); + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/bits/refwrap.h:39, + from /usr/include/c++/13/vector:68, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: +/usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here + 1126 | ptr_fun(_Result (*__x)(_Arg)) + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] + 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here + 1126 | ptr_fun(_Result (*__x)(_Arg)) + | ^~~~~~~ +[ 30%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o.d -o 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/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1473,12 +1457,6 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 78%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp -[ 79%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1500,11 +1478,21 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 79%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o +[ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp +[ 67%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp +[ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp +[ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp +[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp -[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_64.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: +[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp +[ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1514,7 +1502,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1525,9 +1513,7 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1537,7 +1523,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1548,16 +1534,78 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 80%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization7.cpp.in_96.cpp -[ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o +[ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp -[ 81%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o +[ 70%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp -[ 82%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o +[ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp +[ 71%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp +[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp +[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_128.cpp +[ 72%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization2.cpp.in_32.cpp +[ 73%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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-I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_128.cpp +[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_32.cpp +[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_64.cpp +[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization3.cpp.in_96.cpp +[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_128.cpp +[ 76%] Linking CXX shared library ../lib/None/libgatbcore.so +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bglue_algo.cpp.o" 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"CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/api/Data.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Algorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Histogram.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/OptionsParser.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Progress.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/tools/storage/impl/StorageTools.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o" 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"CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization6.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o" +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so.3 ../lib/None/libgatbcore.so +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +[ 76%] Built target gatbcore-dynamic +[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_32.cpp +[ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization4.cpp.in_64.cpp +[ 77%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp +[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1579,6 +1627,8 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ +[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1600,14 +1650,6 @@ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 83%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp -[ 83%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1658,12 +1700,6 @@ cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp [ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp -[ 85%] Linking CXX shared library ../lib/None/libgatbcore.so -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-dynamic.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libgatbcore.so.3 -o ../lib/None/libgatbcore.so.3 "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o" 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/bank/TestSequence.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/tools/dbginfo.cpp -[ 90%] Building CXX object 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmer.cpp.o @@ -1733,25 +1769,25 @@ [ 93%] Linking CXX executable ../bin/None/leon cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/leon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm +[ 93%] Linking CXX executable ../bin/None/dbgh5 +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target leon [ 94%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/kmer/TestKmerBank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/kmer/TestKmerBank.cpp -[ 94%] Linking CXX executable ../bin/None/dbgh5 -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so 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test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestCollection.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/collections/TestCollection.cpp [ 96%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/collections/TestContainer.cpp.o @@ -1803,342 +1839,342 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank/bank21.cpp +-- Installing: 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Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage6.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage10.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage8.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/debruijn/debruijn18.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/README.md -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/./README.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.a -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/template +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp --- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp --- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Collection.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Container.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/template +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo @@ -2198,7 +2234,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match completely debian/libgatbcore3.symbols.amd64 --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-13_amd64) -+++ dpkg-gensymbolsMEvfYJ 2025-05-30 21:43:47.592919648 +0000 ++++ dpkg-gensymbolsMtn2Fm 2024-04-27 15:26:41.609689517 +0000 @@ -317,7 +317,7 @@ (optional)_ZN4gatb4core4bank4impl13BankComposite7getSizeEv@Base 1.4.2 (optional)_ZN4gatb4core4bank4impl13BankComposite8estimateERmS4_S4_@Base 1.4.2 @@ -3725,26 +3761,26 @@ find debian -name "*symbols*" -exec sed -i 's/+dfsg-[0-9]\+$//' \{\} \; make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_shlibdeps -a -O--sourcedirectory=gatb-core -dpkg-shlibdeps: warning: symbol H5P_CLS_DATASET_CREATE_ID_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflate used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzflush used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol gzrewind used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Awrite used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Pset_shuffle used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5T_NATIVE_INT_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Lexists used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Tcopy used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Tset_size used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Fclose used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5open used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_C_S1_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Gopen2 used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Tclose used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Pclose used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Dvlen_reclaim used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5check_version used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--sourcedirectory=gatb-core dh_gencontrol -O--sourcedirectory=gatb-core dh_md5sums -O--sourcedirectory=gatb-core dh_builddeb -O--sourcedirectory=gatb-core -dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-13_amd64.deb'. -dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-13_amd64.deb'. -dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-13_amd64.deb'. +dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-13_amd64.deb'. +dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-13_amd64.deb'. +dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-13_all.deb'. dpkg-genbuildinfo --build=binary -O../gatb-core_1.4.2+dfsg-13_amd64.buildinfo dpkg-genchanges --build=binary -O../gatb-core_1.4.2+dfsg-13_amd64.changes @@ -3753,12 +3789,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/874836/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3987523 and its subdirectories -I: Current time: Fri May 30 09:44:20 -12 2025 -I: pbuilder-time-stamp: 1748641460 +I: removing directory /srv/workspace/pbuilder/874836 and its subdirectories +I: Current time: Sun Apr 28 05:27:07 +14 2024 +I: pbuilder-time-stamp: 1714231627