Diff of the two buildlogs: -- --- b1/build.log 2024-05-02 02:03:24.920135925 +0000 +++ b2/build.log 2024-05-02 02:05:56.545689748 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 1 13:56:39 -12 2024 -I: pbuilder-time-stamp: 1714614999 +I: Current time: Wed Jun 4 22:26:27 +14 2025 +I: pbuilder-time-stamp: 1749025587 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying modify_testing.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1830163/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 4 08:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='888d31719c8c43b9823dc1d98cee2222' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1830163' - PS1='# ' - PS2='> ' + INVOCATION_ID=07fda338c71547cbb656d7b77204d0a6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=701909 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Yh3PIA6P/pbuilderrc_IQyl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Yh3PIA6P/b1 --logfile b1/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Yh3PIA6P/pbuilderrc_4hsx --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Yh3PIA6P/b2 --logfile b2/build.log icb-utils_2.0.1+git20161002.afee1d9-5.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 1 07:43 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1830163/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 31 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -403,7 +435,7 @@ Get: 257 http://deb.debian.org/debian unstable/main amd64 maven all 3.8.7-2 [19.3 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 maven-debian-helper all 2.6.4 [108 kB] -Fetched 253 MB in 15s (16.3 MB/s) +Fetched 253 MB in 6s (42.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19694 files and directories currently installed.) @@ -1251,8 +1283,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu May 2 02:01:20 UTC 2024. -Universal Time is now: Thu May 2 02:01:20 UTC 2024. +Local time is now: Wed Jun 4 08:27:41 UTC 2025. +Universal Time is now: Wed Jun 4 08:27:41 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1656,7 +1688,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../icb-utils_2.0.1+git20161002.afee1d9-5_source.changes dpkg-buildpackage: info: source package icb-utils dpkg-buildpackage: info: source version 2.0.1+git20161002.afee1d9-5 dpkg-buildpackage: info: source distribution unstable @@ -1748,15 +1784,15 @@ [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] Loading source files for package org.apache.unicode... -[WARNING] Loading source files for package edu.cornell.med.icb.identifier... -[WARNING] Loading source files for package edu.cornell.med.icb.net... -[WARNING] Loading source files for package edu.cornell.med.icb.stat... -[WARNING] Loading source files for package edu.cornell.med.icb.io... [WARNING] Loading source files for package edu.cornell.med.icb.util... -[WARNING] Loading source files for package edu.cornell.med.icb.maps... [WARNING] Loading source files for package edu.cornell.med.icb.ip... -[WARNING] Loading source files for package edu.cornell.med.icb.iterators... +[WARNING] Loading source files for package edu.cornell.med.icb.io... +[WARNING] Loading source files for package edu.cornell.med.icb.stat... [WARNING] Loading source files for package edu.cornell.med.icb.cli... +[WARNING] Loading source files for package edu.cornell.med.icb.maps... +[WARNING] Loading source files for package edu.cornell.med.icb.iterators... +[WARNING] Loading source files for package edu.cornell.med.icb.net... +[WARNING] Loading source files for package edu.cornell.med.icb.identifier... [WARNING] Constructing Javadoc information... [WARNING] Building index for all the packages and classes... [WARNING] Standard Doclet version 17.0.11+9-Debian-1 @@ -1833,49 +1869,49 @@ [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/package-tree.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/serialized-form.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/org/apache/unicode/class-use/UnicodeCharUtil.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.FieldType.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParser.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/SimpleChecksum.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/VersionUtils.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/BoundedPriorityQueue.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/RandomAdapter.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBFilenameUtils.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ProcessEstimator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/util/class-use/ICBStringNormalizer.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpAddress.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/ip/class-use/IpUtils.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TsvToFromMap.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParser.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectOutputStream.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionsParsingException.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/DataObjectInputStream.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/TSVReader.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ConditionField.FieldType.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/class-use/ResourceFinder.SearchInClasspath.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AreaUnderTheRocCurveCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/ZScoreCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/LinearRegression.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/RootMeanSquaredErrorCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/AccuracyCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/PredictionStatisticCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MatthewsCorrelationCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/MinMaxCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SensitivityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/stat/class-use/SpecificityCalculator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/maps/class-use/LinkedHashToMultiTypeMap.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/FlatteningIterator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TsvLineIterator.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/IteratorIterable.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/PreSortedMergeTextFilesLineIterator.html... -[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/class-use/UseModality.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/TextFileLineIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/iterators/class-use/RecursiveFileListIterator.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/CommandExecutor.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/net/class-use/SyncPipe.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/IndexedIdentifier.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/PropertyMappable.html... +[WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/class-use/DoubleIndexedIdentifier.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/cli/package-use.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/identifier/package-use.html... [WARNING] Generating /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/target/apidocs/edu/cornell/med/icb/io/package-use.html... @@ -1899,8 +1935,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 21.631 s -[INFO] Finished at: 2024-05-01T14:02:30-12:00 +[INFO] Total time: 9.075 s +[INFO] Finished at: 2025-06-04T22:28:27+14:00 [INFO] ------------------------------------------------------------------------ jh_build -O--buildsystem=maven dh_auto_test -O--buildsystem=maven @@ -1941,370 +1977,362 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.383 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier -[INFO] Running edu.cornell.med.icb.io.TestConditionsParser -14:02:41.418 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -14:02:41.423 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -14:02:41.424 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -14:02:41.425 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -14:02:41.426 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -14:02:41.426 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -14:02:41.426 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -14:02:41.427 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -14:02:41.427 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -14:02:41.429 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -14:02:41.430 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -14:02:41.430 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -14:02:41.431 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -14:02:41.431 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -14:02:41.431 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -14:02:41.432 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -14:02:41.432 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -14:02:41.432 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -14:02:41.433 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -14:02:41.433 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -14:02:41.433 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -14:02:41.434 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -14:02:41.434 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -14:02:41.434 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -14:02:41.436 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 -14:02:41.437 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' -14:02:41.437 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal -14:02:41.439 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 -14:02:41.439 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' -14:02:41.440 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: -14:02:41.441 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' -14:02:41.441 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' -14:02:41.442 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' -14:02:41.443 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' -14:02:41.444 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 -14:02:41.444 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' -14:02:41.444 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' -14:02:41.445 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: -14:02:41.445 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' -14:02:41.452 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@76a4d6c -14:02:41.454 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@76a4d6c' to type 'boolean[]' -14:02:41.454 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] -14:02:41.455 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@517cd4b -14:02:41.455 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@517cd4b' to type 'byte[]' -14:02:41.455 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@6cc7b4de -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@6cc7b4de' to type 'char[]' -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@32cf48b7 -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@32cf48b7' to type 'double[]' -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] -14:02:41.456 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@679b62af -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@679b62af' to type 'float[]' -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@5cdd8682 -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@5cdd8682' to type 'int[]' -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@d6da883 -14:02:41.457 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@d6da883' to type 'long[]' -14:02:41.458 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] -14:02:41.458 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@45afc369 -14:02:41.458 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@45afc369' to type 'short[]' -14:02:41.458 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] -14:02:41.465 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@799d4f69 -14:02:41.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@799d4f69' to type 'BigDecimal[]' -14:02:41.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] -14:02:41.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@290dbf45 -14:02:41.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@290dbf45' to type 'BigInteger[]' -14:02:41.466 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@17776a8 -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@17776a8' to type 'Boolean[]' -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@2d127a61 -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@2d127a61' to type 'Byte[]' -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@2bbaf4f0 -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@2bbaf4f0' to type 'Character[]' -14:02:41.467 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@11c20519 -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@11c20519' to type 'Double[]' -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@4e41089d -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@4e41089d' to type 'Float[]' -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] -14:02:41.468 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@33cb5951 -14:02:41.469 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@33cb5951' to type 'Integer[]' -14:02:41.469 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] -14:02:41.470 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@365c30cc -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@365c30cc' to type 'Long[]' -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@701fc37a -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@701fc37a' to type 'Short[]' -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@4148db48 -14:02:41.471 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@4148db48' to type 'String[]' -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@282003e1 -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@282003e1' to type 'Class[]' -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@7fad8c79 -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@7fad8c79' to type 'Date[]' -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@76329302 -14:02:41.472 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@76329302' to type 'Calendar[]' -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@4df828d7 -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@4df828d7' to type 'java.io.File[]' -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@62fdb4a6 -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@62fdb4a6' to type 'java.sql.Date[]' -14:02:41.473 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@1dd02175 -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@1dd02175' to type 'java.sql.Time[]' -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@3e77a1ed -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@3e77a1ed' to type 'java.sql.Timestamp[]' -14:02:41.474 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] -14:02:41.475 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@23bb8443 -14:02:41.475 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@23bb8443' to type 'java.net.URL[]' -14:02:41.475 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] -14:02:41.526 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -14:02:41.526 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -14:02:41.526 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.526 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -14:02:41.529 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -14:02:41.530 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -14:02:41.530 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -14:02:41.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -14:02:41.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.530 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -14:02:41.532 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' -14:02:41.533 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' -14:02:41.533 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.534 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' -14:02:41.535 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' -14:02:41.540 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' -14:02:41.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' -14:02:41.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.540 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' -14:02:41.546 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -14:02:41.549 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -14:02:41.549 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.549 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.550 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.550 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -14:02:41.550 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -14:02:41.550 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.551 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -14:02:41.552 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean -14:02:41.553 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -14:02:41.553 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.553 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.553 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -14:02:41.554 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.555 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -14:02:41.564 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' -14:02:41.570 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.570 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -14:02:41.573 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' -14:02:41.574 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -14:02:41.575 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.576 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -14:02:41.577 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' -14:02:41.577 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -14:02:41.580 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -14:02:41.580 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.580 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.580 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.583 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -14:02:41.583 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -14:02:41.583 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.583 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -14:02:41.587 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -14:02:41.588 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.588 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.588 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.588 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -14:02:41.588 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.589 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' -14:02:41.590 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' -14:02:41.591 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.591 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' -14:02:41.604 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' -14:02:41.604 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' -14:02:41.605 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' -14:02:41.622 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -14:02:41.622 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.622 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.622 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.623 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -14:02:41.623 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -14:02:41.623 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.623 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.624 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.627 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -14:02:41.627 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -14:02:41.627 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.627 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -14:02:41.627 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' -14:02:41.628 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' -14:02:41.628 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.628 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' -14:02:41.631 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' -14:02:41.631 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' -14:02:41.631 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.631 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.632 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' -14:02:41.633 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' -14:02:41.633 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' -14:02:41.634 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion -14:02:41.634 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' -14:02:41.634 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' -14:02:41.634 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' -14:02:41.635 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion -14:02:41.635 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.752 s - in edu.cornell.med.icb.io.TestConditionsParser -[INFO] Running edu.cornell.med.icb.io.TestTSVReader -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in edu.cornell.med.icb.io.TestTSVReader -[INFO] Running edu.cornell.med.icb.io.TestResourceFinder -14:02:41.699 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.701 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.701 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -14:02:41.704 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.707 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.707 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader -14:02:41.707 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem -14:02:41.708 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] -14:02:41.711 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.712 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.712 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader -14:02:41.712 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.713 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.713 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader -14:02:41.719 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem -14:02:41.729 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.730 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.730 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader -14:02:41.730 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.731 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a -14:02:41.731 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader -14:02:41.731 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem -[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.049 s - in edu.cornell.med.icb.io.TestResourceFinder -[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBStringNormalizer [INFO] Running edu.cornell.med.icb.util.TestICBStringUtils -[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.093 s - in edu.cornell.med.icb.util.TestICBStringUtils -[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBFilenameUtils -[INFO] Running edu.cornell.med.icb.util.TestVersionUtils -14:02:41.900 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -14:02:41.901 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN -14:02:41.917 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.019 s - in edu.cornell.med.icb.util.TestVersionUtils +[INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in edu.cornell.med.icb.util.TestICBStringUtils [INFO] Running edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 s - in edu.cornell.med.icb.util.TestRandomAdapter -[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestRandomAdapter +[INFO] Running edu.cornell.med.icb.util.TestVersionUtils +22:28:30.541 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +22:28:30.544 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: UNKNOWN +22:28:30.545 [main] DEBUG edu.cornell.med.icb.util.VersionUtils - Implementation-Version: 2.6 +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.085 s - in edu.cornell.med.icb.util.TestVersionUtils [INFO] Running edu.cornell.med.icb.util.TestSimpleChecksum -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 s - in edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in edu.cornell.med.icb.util.TestSimpleChecksum +[INFO] Running edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in edu.cornell.med.icb.util.TestBoundedPriorityQueue +[INFO] Running edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBFilenameUtils +[INFO] Running edu.cornell.med.icb.util.TestICBStringNormalizer +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.util.TestICBStringNormalizer [INFO] Running edu.cornell.med.icb.ip.TestIpAddress -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.041 s - in edu.cornell.med.icb.ip.TestIpAddress +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in edu.cornell.med.icb.ip.TestIpAddress [INFO] Running edu.cornell.med.icb.ip.TestIpUtils -[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.023 s - in edu.cornell.med.icb.ip.TestIpUtils -[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.122 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator -[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator +[WARNING] Tests run: 13, Failures: 0, Errors: 0, Skipped: 5, Time elapsed: 0.001 s - in edu.cornell.med.icb.ip.TestIpUtils +[INFO] Running edu.cornell.med.icb.io.TestResourceFinder +22:28:30.647 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.648 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.648 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +22:28:30.648 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.648 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.648 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] using system class loader +22:28:30.649 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [/tmp/temp-file.txt] as file in filesystem +22:28:30.649 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - ... fo`und url is [file:/tmp/temp-file.txt] +22:28:30.649 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.649 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.649 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [temp-file.txt] using system class loader +22:28:30.650 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.650 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.650 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] using system class loader +22:28:30.650 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [./temp-file.txt] as file in filesystem +22:28:30.651 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.651 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.651 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport.ipr] using system class loader +22:28:30.651 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using context class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.652 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using class loader jdk.internal.loader.ClassLoaders$AppClassLoader@2cdf8d8a +22:28:30.652 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] using system class loader +22:28:30.652 [main] DEBUG edu.cornell.med.icb.io.ResourceFinder - Trying to find [testsupport/testsupport.ipr] as file in filesystem +[WARNING] Tests run: 5, Failures: 0, Errors: 0, Skipped: 2, Time elapsed: 0.002 s - in edu.cornell.med.icb.io.TestResourceFinder +[INFO] Running edu.cornell.med.icb.io.TestTSVReader +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.io.TestTSVReader +[INFO] Running edu.cornell.med.icb.io.TestConditionsParser +22:28:30.664 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +22:28:30.664 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +22:28:30.664 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +22:28:30.665 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +22:28:30.665 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +22:28:30.665 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +22:28:30.666 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +22:28:30.667 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +22:28:30.668 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +22:28:30.669 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Setting default value: 0.0 +22:28:30.669 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - Converting 'BigDecimal' value '0.0' to type 'BigDecimal' +22:28:30.669 [main] DEBUG org.apache.commons.beanutils.converters.BigDecimalConverter - No conversion required, value is already a BigDecimal +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Setting default value: 0 +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - Converting 'BigInteger' value '0' to type 'BigInteger' +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BigIntegerConverter - No conversion required, value is already a BigInteger +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Setting default value: false +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - Converting 'Boolean' value 'false' to type 'Boolean' +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.BooleanConverter - No conversion required, value is already a Boolean +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Setting default value: 0 +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converting 'Integer' value '0' to type 'Byte' +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.ByteConverter - Converted to Byte value '0' +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Setting default value: +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - Converting 'Character' value ' ' to type 'Character' +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.CharacterConverter - No conversion required, value is already a Character +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Setting default value: 0 +22:28:30.670 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'Integer' value '0' to type 'Double' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '0.0' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Setting default value: 0 +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converting 'Integer' value '0' to type 'Float' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.FloatConverter - Converted to Float value '0.0' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Setting default value: 0 +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'Integer' value '0' to type 'Integer' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No conversion required, value is already a Integer +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Setting default value: 0 +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converting 'Integer' value '0' to type 'Long' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.LongConverter - Converted to Long value '0' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Setting default value: 0 +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converting 'Integer' value '0' to type 'Short' +22:28:30.671 [main] DEBUG org.apache.commons.beanutils.converters.ShortConverter - Converted to Short value '0' +22:28:30.672 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Setting default value: +22:28:30.672 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '' to type 'String' +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Z@1c72da34 +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'boolean[]' value '[Z@1c72da34' to type 'boolean[]' +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a boolean[] +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [B@6b0c2d26 +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'byte[]' value '[B@6b0c2d26' to type 'byte[]' +22:28:30.675 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a byte[] +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [C@3d3fcdb0 +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'char[]' value '[C@3d3fcdb0' to type 'char[]' +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a char[] +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [D@641147d0 +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'double[]' value '[D@641147d0' to type 'double[]' +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a double[] +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [F@6e38921c +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'float[]' value '[F@6e38921c' to type 'float[]' +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a float[] +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [I@64d7f7e0 +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'int[]' value '[I@64d7f7e0' to type 'int[]' +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a int[] +22:28:30.676 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [J@27c6e487 +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'long[]' value '[J@27c6e487' to type 'long[]' +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a long[] +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [S@49070868 +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'short[]' value '[S@49070868' to type 'short[]' +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a short[] +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigDecimal;@6385cb26 +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigDecimal[]' value '[Ljava.math.BigDecimal;@6385cb26' to type 'BigDecimal[]' +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigDecimal[] +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.math.BigInteger;@28c4711c +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'BigInteger[]' value '[Ljava.math.BigInteger;@28c4711c' to type 'BigInteger[]' +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a BigInteger[] +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Boolean;@146044d7 +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Boolean[]' value '[Ljava.lang.Boolean;@146044d7' to type 'Boolean[]' +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Boolean[] +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Byte;@15d9bc04 +22:28:30.677 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Byte[]' value '[Ljava.lang.Byte;@15d9bc04' to type 'Byte[]' +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Byte[] +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Character;@473b46c3 +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Character[]' value '[Ljava.lang.Character;@473b46c3' to type 'Character[]' +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Character[] +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Double;@516be40f +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Double[]' value '[Ljava.lang.Double;@516be40f' to type 'Double[]' +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Double[] +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Float;@646be2c3 +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Float[]' value '[Ljava.lang.Float;@646be2c3' to type 'Float[]' +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Float[] +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Integer;@77be656f +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Integer[]' value '[Ljava.lang.Integer;@77be656f' to type 'Integer[]' +22:28:30.678 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Integer[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Long;@19dc67c2 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Long[]' value '[Ljava.lang.Long;@19dc67c2' to type 'Long[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Long[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Short;@221af3c0 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Short[]' value '[Ljava.lang.Short;@221af3c0' to type 'Short[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Short[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.String;@62bd765 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'String[]' value '[Ljava.lang.String;@62bd765' to type 'String[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a String[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.lang.Class;@23a5fd2 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Class[]' value '[Ljava.lang.Class;@23a5fd2' to type 'Class[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Class[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Date;@78a2da20 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Date[]' value '[Ljava.util.Date;@78a2da20' to type 'Date[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Date[] +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.util.Calendar;@551bdc27 +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'Calendar[]' value '[Ljava.util.Calendar;@551bdc27' to type 'Calendar[]' +22:28:30.679 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a Calendar[] +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.io.File;@6b1274d2 +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.io.File[]' value '[Ljava.io.File;@6b1274d2' to type 'java.io.File[]' +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.io.File[] +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Date;@70b0b186 +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Date[]' value '[Ljava.sql.Date;@70b0b186' to type 'java.sql.Date[]' +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Date[] +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Time;@7364985f +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Time[]' value '[Ljava.sql.Time;@7364985f' to type 'java.sql.Time[]' +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Time[] +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.sql.Timestamp;@709ba3fb +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.sql.Timestamp[]' value '[Ljava.sql.Timestamp;@709ba3fb' to type 'java.sql.Timestamp[]' +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.sql.Timestamp[] +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Setting default value: [Ljava.net.URL;@6a472554 +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - Converting 'java.net.URL[]' value '[Ljava.net.URL;@6a472554' to type 'java.net.URL[]' +22:28:30.680 [main] DEBUG org.apache.commons.beanutils.converters.ArrayConverter - No conversion required, value is already a java.net.URL[] +22:28:30.693 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +22:28:30.693 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +22:28:30.693 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.693 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.694 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '456' to class 'double' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '456' to type 'Double' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '456.0' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'def' to class 'java.lang.String' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'def' to type 'String' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '123' to class 'int' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '123' to type 'Integer' +22:28:30.695 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '123' +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '8.367' to class 'double' +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '8.367' to type 'Double' +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '8.367' +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3bf' to class 'java.lang.String' +22:28:30.696 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value '3bf' to type 'String' +22:28:30.697 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '567' to class 'int' +22:28:30.698 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '567' to type 'Integer' +22:28:30.698 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.698 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '567' +22:28:30.698 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.699 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.BeanUtils - Cloning bean: edu.cornell.med.icb.io.SampleBean +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.700 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +22:28:30.701 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +22:28:30.701 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +22:28:30.701 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.701 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'int[]' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '30' to type 'Integer' +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.702 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '30' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'double[]' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 2.5' to type 'Double' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.5' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value ' 1.5' to type 'Double' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '1.5' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[3] to class 'java.lang.String[]' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field3b' to type 'String' +22:28:30.703 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value ' field 3c' to type 'String' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'int[]' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'double[]' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert String[1] to class 'java.lang.String[]' +22:28:30.704 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +22:28:30.705 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +22:28:30.705 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.705 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.706 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.707 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '3.5' to class 'double' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '3.5' to type 'Double' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '3.5' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'field3' to class 'java.lang.String' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'field3' to type 'String' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.708 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '2.2' to class 'double' +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '2.2' to type 'Double' +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '2.2' +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string 'threedefault' to class 'java.lang.String' +22:28:30.709 [main] DEBUG org.apache.commons.beanutils.converters.StringConverter - Converting 'String' value 'threedefault' to type 'String' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '10' to class 'int' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '10' to type 'Integer' +22:28:30.710 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '10' +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.711 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '20' to class 'int' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '20' to type 'Integer' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '20' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '50' to class 'int' +22:28:30.712 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '50' to type 'Integer' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '50' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '60.4' to class 'double' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '60.4' to type 'Double' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '60.4' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '40' to class 'int' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '40' to type 'Integer' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '40' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '80' to class 'int' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converting 'String' value '80' to type 'Integer' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - No NumberFormat, using default conversion +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.converters.IntegerConverter - Converted to Integer value '80' +22:28:30.713 [main] DEBUG org.apache.commons.beanutils.ConvertUtils - Convert string '70.3' to class 'double' +22:28:30.714 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converting 'String' value '70.3' to type 'Double' +22:28:30.714 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - No NumberFormat, using default conversion +22:28:30.714 [main] DEBUG org.apache.commons.beanutils.converters.DoubleConverter - Converted to Double value '70.3' +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in edu.cornell.med.icb.io.TestConditionsParser [INFO] Running edu.cornell.med.icb.cli.TestUseModality (-m|--mode) Mode of execution, one of: mode1 @@ -2312,7 +2340,15 @@ [-h|--help] This message. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 s - in edu.cornell.med.icb.cli.TestUseModality +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in edu.cornell.med.icb.cli.TestUseModality +[INFO] Running edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in edu.cornell.med.icb.iterators.TestTsvLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in edu.cornell.med.icb.iterators.TestTextFileLineIterator +[INFO] Running edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.331 s - in edu.cornell.med.icb.iterators.TestPreSortedMergeTextFilesLineIterator +[INFO] Running edu.cornell.med.icb.identifier.TestIndexedIdentifier +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in edu.cornell.med.icb.identifier.TestIndexedIdentifier [INFO] [INFO] Results: [INFO] @@ -2321,8 +2357,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 13.556 s -[INFO] Finished at: 2024-05-01T14:02:49-12:00 +[INFO] Total time: 10.635 s +[INFO] Finished at: 2025-06-04T22:28:39+14:00 [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=maven @@ -2354,15 +2390,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 2.337 s -[INFO] Finished at: 2024-05-01T14:02:56-12:00 +[INFO] Total time: 1.117 s +[INFO] Finished at: 2025-06-04T22:28:41+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -plibicb-utils-java --base-directory=/build/reproducible-path/icb-utils-2.0.1\+git20161002.afee1d9 --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/colt/colt/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/colt/colt -May 01, 2024 2:03:05 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Jun 04, 2025 10:28:47 PM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/icb-utils-2.0.1+git20161002.afee1d9/pom.xml: Dependency not found colt:colt:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: colt:colt:debian @@ -2398,12 +2434,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/701909/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1830163 and its subdirectories -I: Current time: Wed May 1 14:03:24 -12 2024 -I: pbuilder-time-stamp: 1714615404 +I: removing directory /srv/workspace/pbuilder/701909 and its subdirectories +I: Current time: Wed Jun 4 22:28:55 +14 2025 +I: pbuilder-time-stamp: 1749025735