Diff of the two buildlogs: -- --- b1/build.log 2024-05-11 01:54:22.799801790 +0000 +++ b2/build.log 2024-05-11 02:16:08.220127100 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 12 20:13:55 -12 2025 -I: pbuilder-time-stamp: 1749802435 +I: Current time: Sat May 11 15:54:27 +14 2024 +I: pbuilder-time-stamp: 1715392467 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -36,52 +36,84 @@ dpkg-source: info: applying omit_blat_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3425906/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 11 01:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4d03f7a115034569bfa6eaa3e7390fb2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3425906' - PS1='# ' - PS2='> ' + INVOCATION_ID=9846e795043f4d1ca3c38a6c22d109f8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2272524 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zEBcUFTy/pbuilderrc_sROr --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zEBcUFTy/b1 --logfile b1/build.log igv_2.17.3+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zEBcUFTy/pbuilderrc_kVh4 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zEBcUFTy/b2 --logfile b2/build.log igv_2.17.3+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 11 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3425906/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 9 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -660,7 +692,7 @@ Get: 481 http://deb.debian.org/debian unstable/main amd64 libprotobuf-java all 3.21.12-8.2 [1260 kB] Get: 482 http://deb.debian.org/debian unstable/main amd64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] Get: 483 http://deb.debian.org/debian unstable/main amd64 openjfx amd64 11.0.11+1-3.2 [6556 B] -Fetched 445 MB in 14s (32.2 MB/s) +Fetched 445 MB in 32s (13.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19700 files and directories currently installed.) @@ -2242,8 +2274,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Jun 13 08:16:20 UTC 2025. -Universal Time is now: Fri Jun 13 08:16:20 UTC 2025. +Local time is now: Sat May 11 02:02:33 UTC 2024. +Universal Time is now: Sat May 11 02:02:33 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -2841,7 +2873,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/igv-2.17.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.17.3+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/igv-2.17.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.17.3+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.17.3+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2882,81 +2918,81 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:3488380): WARNING **: 20:16:40.224: Unable to create profile directory (Permission denied) (13) -** Message: 20:16:40.233: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 20:16:40.233: Inkscape will run with default settings, and new settings will not be saved. +** (process:2410054): WARNING **: 16:05:06.437: Unable to create profile directory (Permission denied) (13) +** Message: 16:05:06.495: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 16:05:06.496: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3488380): WARNING **: 20:16:40.380: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2410054): WARNING **: 16:05:08.009: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3488380): WARNING **: 20:16:40.380: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2410054): WARNING **: 16:05:08.009: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3488380): Gtk-CRITICAL **: 20:16:40.418: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2410054): Gtk-CRITICAL **: 16:05:08.452: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3488380): WARNING **: 20:16:40.418: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2410054): WARNING **: 16:05:08.452: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3488487): WARNING **: 20:16:40.512: Unable to create profile directory (Permission denied) (13) -** Message: 20:16:40.521: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 20:16:40.521: Inkscape will run with default settings, and new settings will not be saved. +** (process:2410243): WARNING **: 16:05:09.850: Unable to create profile directory (Permission denied) (13) +** Message: 16:05:09.945: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 16:05:09.945: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3488487): WARNING **: 20:16:40.665: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2410243): WARNING **: 16:05:11.892: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3488487): WARNING **: 20:16:40.665: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2410243): WARNING **: 16:05:11.892: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3488487): Gtk-CRITICAL **: 20:16:40.703: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2410243): Gtk-CRITICAL **: 16:05:12.365: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3488487): WARNING **: 20:16:40.703: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2410243): WARNING **: 16:05:12.371: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3488596): WARNING **: 20:16:40.796: Unable to create profile directory (Permission denied) (13) -** Message: 20:16:40.805: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 20:16:40.805: Inkscape will run with default settings, and new settings will not be saved. +** (process:2410416): WARNING **: 16:05:13.333: Unable to create profile directory (Permission denied) (13) +** Message: 16:05:13.414: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 16:05:13.422: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3488596): WARNING **: 20:16:40.948: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2410416): WARNING **: 16:05:15.082: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3488596): WARNING **: 20:16:40.948: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2410416): WARNING **: 16:05:15.083: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3488596): Gtk-CRITICAL **: 20:16:40.985: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2410416): Gtk-CRITICAL **: 16:05:15.452: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3488596): WARNING **: 20:16:40.985: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2410416): WARNING **: 16:05:15.459: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3488701): WARNING **: 20:16:41.080: Unable to create profile directory (Permission denied) (13) -** Message: 20:16:41.088: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 20:16:41.088: Inkscape will run with default settings, and new settings will not be saved. +** (process:2410507): WARNING **: 16:05:16.420: Unable to create profile directory (Permission denied) (13) +** Message: 16:05:16.494: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 16:05:16.502: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3488701): WARNING **: 20:16:41.230: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2410507): WARNING **: 16:05:17.888: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3488701): WARNING **: 20:16:41.230: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2410507): WARNING **: 16:05:17.895: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3488701): Gtk-CRITICAL **: 20:16:41.268: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2410507): Gtk-CRITICAL **: 16:05:18.195: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3488701): WARNING **: 20:16:41.268: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2410507): WARNING **: 16:05:18.196: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3488810): WARNING **: 20:16:41.363: Unable to create profile directory (Permission denied) (13) -** Message: 20:16:41.372: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 20:16:41.372: Inkscape will run with default settings, and new settings will not be saved. +** (process:2410691): WARNING **: 16:05:19.044: Unable to create profile directory (Permission denied) (13) +** Message: 16:05:19.093: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 16:05:19.096: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3488810): WARNING **: 20:16:41.516: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:2410691): WARNING **: 16:05:20.492: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3488810): WARNING **: 20:16:41.516: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:2410691): WARNING **: 16:05:20.498: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3488810): Gtk-CRITICAL **: 20:16:41.553: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:2410691): Gtk-CRITICAL **: 16:05:20.860: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3488810): WARNING **: 20:16:41.553: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:2410691): WARNING **: 16:05:20.871: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/reproducible-path/igv-2.17.3+dfsg' jh_linkjars -O--buildsystem=gradle dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -2964,18 +3000,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.694 secs. -The client will now receive all logging from the daemon (pid: 3489306). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-3489306.out.log +An attempt to start the daemon took 9.692 secs. +The client will now receive all logging from the daemon (pid: 2411662). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-2411662.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@78f8e0ea -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@78f8e0ea -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1611a76b +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@720cb12 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@720cb12 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@25ca1f24 Starting Build Compiling initialization script '/build/reproducible-path/igv-2.17.3+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@57b5b968 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@47d5e569 Compiling initialization script '/build/reproducible-path/igv-2.17.3+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2988,7 +3024,7 @@ Evaluating root project 'igv' using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle' using BuildScriptTransformer. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@221892dd +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@17bf4c69 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3032,14 +3068,14 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3018fd05 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3209d629 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1611a76b -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@20502ec7 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@16ca8cdb -:compileJava (Thread[Task worker for ':' Thread 4,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@25ca1f24 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@529e355e +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3388d5a0 +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Putting task artifact state for task ':compileJava' into context took 0.172 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found Malformed jar [htsjdk-debian.jar] found on classpath. Gradle 5.0 will no longer allow malformed jars on a classpath. at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashMalformedZip(AbstractClasspathSnapshotBuilder.java:120) @@ -3090,7 +3126,7 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 1.732 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 34.47 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found @@ -3100,38 +3136,38 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileJava (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 10.668 secs. -:processResources (Thread[Task worker for ':' Thread 4,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 3 mins 39.45 secs. +:processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.045 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 2.375 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.164 secs. -:classes (Thread[Task worker for ':' Thread 4,5,main]) started. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 5.747 secs. +:classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) started. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.004 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/igv-2.17.3+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.085 secs. -:jar (Thread[Task worker for ':' Thread 4,5,main]) started. +:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 1.232 secs. +:jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.034 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.175 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 4,5,main]) completed. Took 0.532 secs. +:jar (Thread[Task worker for ':',5,main]) completed. Took 4.807 secs. -BUILD SUCCESSFUL in 16s +BUILD SUCCESSFUL in 4m 56s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=42 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=20 test openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) @@ -3139,17 +3175,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.694 secs. -The client will now receive all logging from the daemon (pid: 3495069). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-3495069.out.log +An attempt to start the daemon took 12.39 secs. +The client will now receive all logging from the daemon (pid: 2436207). The daemon log file: /build/reproducible-path/igv-2.17.3+dfsg/.gradle/daemon/4.4.1/daemon-2436207.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 42 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@28c8497b -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@28c8497b -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@52768cb8 +Using 20 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@737461c7 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@737461c7 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c443862 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6d527b0b +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3c36dd91 Settings evaluated using settings file '/build/reproducible-path/igv-2.17.3+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3157,7 +3193,7 @@ Adding Debian repository to project 'igv' Parallel execution is an incubating feature. Evaluating root project 'igv' using build file '/build/reproducible-path/igv-2.17.3+dfsg/build.gradle'. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@18311852 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1a18279d Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3201,34 +3237,34 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7abfcadf +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@76b4dfac Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@52768cb8 -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ca9e210 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@56ad1490 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c443862 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@63fc3ada +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.17.3+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@45f97611 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.003 secs. +Putting task artifact state for task ':compileJava' into context took 0.043 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 0.345 secs). +Skipping task ':compileJava' as it is up-to-date (took 20.872 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.362 secs. -:processResources (Thread[Task worker for ':',5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 21.075 secs. +:processResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.046 secs). +Skipping task ':processResources' as it is up-to-date (took 2.033 secs). :processResources UP-TO-DATE -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.049 secs. -:classes (Thread[Task worker for ':',5,main]) started. +:processResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 2.107 secs. +:classes (Thread[Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[Task worker for ':',5,main]) started. +:classes (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.014 secs. +:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Malformed class file [DataLoadedEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3277,7 +3313,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [GenomeChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3326,7 +3362,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3375,7 +3411,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [FrameManager$ChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3473,7 +3509,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [SortOption.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [DataLoadedEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3522,7 +3558,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [InsertionSelectionEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [AlignmentTrackEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3571,7 +3607,7 @@ at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) -Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. +Malformed class file [GenomeChangeEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. at org.gradle.api.internal.changedetection.state.AbiExtractingClasspathResourceHasher.hash(AbiExtractingClasspathResourceHasher.java:60) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.CachingResourceHasher.hash(CachingResourceHasher.java:47) @@ -3626,7 +3662,7 @@ Passing through org.hamcrest:hamcrest:jar:debian file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 0.714 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 31.357 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found @@ -3636,19 +3672,19 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 3.376 secs. -:processTestResources (Thread[Task worker for ':',5,main]) started. +:compileTestJava (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 1 mins 24.745 secs. +:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. -:testClasses (Thread[Task worker for ':',5,main]) started. +:processTestResources (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.099 secs. +:testClasses (Thread[Task worker for ':' Thread 2,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. -:test (Thread[Task worker for ':',5,main]) started. +:testClasses (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 0.009 secs. +:test (Thread[Task worker for ':' Thread 2,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Replacing org.junit.vintage:junit-vintage-engine:jar:5.8.2 -> org.junit.vintage:junit-vintage-engine:jar:debian @@ -3658,289 +3694,183 @@ Passing through org.opentest4j:opentest4j:jar:debian Passing through org.junit.platform:junit-platform-commons:jar:debian file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Up-to-date check for task ':test' took 0.462 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 5.197 secs. It is not up-to-date because: No history is available. file or directory '/build/reproducible-path/igv-2.17.3+dfsg/lib', not found -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath581922917316977677txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 16'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16464394479065338357txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 16' Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath11445819309179036585txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' -Starting process 'Gradle Test Executor 19'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath14759612555556787735txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 19' -Starting process 'Gradle Test Executor 9'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath795416336735007102txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 9' -Starting process 'Gradle Test Executor 18'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath10659563264539975585txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 18' -Starting process 'Gradle Test Executor 14'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath6797114264347186258txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 14' -Starting process 'Gradle Test Executor 7'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath15510873879954820718txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' -Starting process 'Gradle Test Executor 11'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath15893170158109112574txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 11' -Starting process 'Gradle Test Executor 21'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath3352262271881042659txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 21' -Starting process 'Gradle Test Executor 10'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath10233186295133421624txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 10' -Starting process 'Gradle Test Executor 13'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath3259012724154182163txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 13' -Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath70435388419319383txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath5072415496093564324txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' -Starting process 'Gradle Test Executor 20'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath6872081457604557660txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 20' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath9685176582857373557txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' Starting process 'Gradle Test Executor 8'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath11978775928201305102txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 8' -Starting process 'Gradle Test Executor 12'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath17970601966310365800txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 12' -Starting process 'Gradle Test Executor 15'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16570650119246474569txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 15' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath3967975040265293917txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 8' +Starting process 'Gradle Test Executor 10'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath13847217779071163686txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 10' Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath16692828913640823310txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath7142102694488460110txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath5408528359199883791txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath12599122283577920985txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath812584016337722547txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' -Starting process 'Gradle Test Executor 17'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.6.13+bpo-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath795559543711137602txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 17' -Successfully started process 'Gradle Test Executor 9' -Successfully started process 'Gradle Test Executor 17' -Successfully started process 'Gradle Test Executor 16' -Successfully started process 'Gradle Test Executor 2' -Successfully started process 'Gradle Test Executor 15' -Successfully started process 'Gradle Test Executor 12' -Successfully started process 'Gradle Test Executor 8' -Successfully started process 'Gradle Test Executor 20' -Successfully started process 'Gradle Test Executor 4' -Successfully started process 'Gradle Test Executor 3' -Successfully started process 'Gradle Test Executor 6' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath14681336501703716337txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 7'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath2833212594155449760txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' +Starting process 'Gradle Test Executor 9'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath13428698245149167945txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 9' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.17.3+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.11+9-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.11 -Djava.version.date=2024-04-16 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.11+9-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.17.3+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.17.3+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath2746560195330587149txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 10' -Successfully started process 'Gradle Test Executor 21' -Successfully started process 'Gradle Test Executor 11' +Successfully started process 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 7' -Successfully started process 'Gradle Test Executor 14' -Successfully started process 'Gradle Test Executor 18' +Successfully started process 'Gradle Test Executor 3' +Successfully started process 'Gradle Test Executor 6' +Successfully started process 'Gradle Test Executor 4' +Successfully started process 'Gradle Test Executor 2' +Successfully started process 'Gradle Test Executor 9' +Successfully started process 'Gradle Test Executor 8' Successfully started process 'Gradle Test Executor 5' -Successfully started process 'Gradle Test Executor 13' -Successfully started process 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 19' -Gradle Test Executor 9 started executing tests. -Gradle Test Executor 20 started executing tests. -Gradle Test Executor 17 started executing tests. -Gradle Test Executor 12 started executing tests. -Gradle Test Executor 6 started executing tests. Gradle Test Executor 3 started executing tests. -Gradle Test Executor 15 started executing tests. -Gradle Test Executor 16 started executing tests. -Gradle Test Executor 4 started executing tests. -Gradle Test Executor 19 started executing tests. -Gradle Test Executor 18 started executing tests. +Gradle Test Executor 6 started executing tests. Gradle Test Executor 7 started executing tests. -Gradle Test Executor 13 started executing tests. -Gradle Test Executor 8 started executing tests. -Gradle Test Executor 1 started executing tests. -Gradle Test Executor 21 started executing tests. -Gradle Test Executor 11 started executing tests. -Gradle Test Executor 5 started executing tests. Gradle Test Executor 10 started executing tests. -Gradle Test Executor 2 started executing tests. -Gradle Test Executor 14 started executing tests. - -org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT - IntArrayList time: 1 - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED - -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt +org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED +Gradle Test Executor 4 started executing tests. -org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED +org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED -org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED +org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED -org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED +org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED +Gradle Test Executor 5 started executing tests. -org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test +Gradle Test Executor 9 started executing tests. +Gradle Test Executor 1 started executing tests. -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED - -org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED - -org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED - -org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 151 - -org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED - -org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testRemoteCraiCram SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testIterateLocalCraiCram SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalCraiCram SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED +org.broad.igv.batch.CommandExecutorTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test +Gradle Test Executor 8 started executing tests. +Gradle Test Executor 2 started executing tests. -org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED -org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED +org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT + IntArrayList time: 24 -org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED +org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT + IntArrayList time: 1729 -org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED +org.broad.igv.feature.DataURLParserTest > testDataURL STANDARD_ERROR + May 11, 2024 4:13:42 PM java.util.prefs.FileSystemPreferences$1 run + INFO: Created user preferences directory. -org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED -org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED -org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED -org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 3 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED -org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT - bam +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT +org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED +org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort2 STANDARD_OUT -org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED +org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort3 STANDARD_OUT -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED -Gradle Test Executor 14 finished executing tests. -org.broad.igv.batch.CommandListenerTest STANDARD_ERROR - Jun 12, 2025 8:17:08 PM java.util.prefs.FileSystemPreferences$1 run - INFO: Created user preferences directory. +org.broad.igv.feature.genome.ChromosomeNameComparatorTest > foo STANDARD_OUT + -1 + -1 -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED +org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED +org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED -Gradle Test Executor 21 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 16 finished executing tests. +org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED -org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED -org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED +org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT -WARNING: System::setSecurityManager will be removed in a future release - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR + SEVERE [May 11,2024 16:13] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [May 11,2024 16:13] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float -org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt -org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED -Gradle Test Executor 20 finished executing tests. +org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR + SEVERE [May 11,2024 16:13] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 15 finished executing tests. + +org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED + +org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +Gradle Test Executor 4 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 3 finished executing tests. -org.broad.igv.batch.CommandListenerTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT + 115 + -115 + -90 + -64 -org.broad.igv.batch.CommandExecutorTest STANDARD_OUT +org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort2 STANDARD_OUT +org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED +org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED -org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort3 STANDARD_OUT +org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED +org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED -org.broad.igv.feature.genome.ChromosomeNameComparatorTest > foo STANDARD_OUT - -1 - -1 +org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED -org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT - 115 - -115 - -90 - -64 -Gradle Test Executor 4 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED -org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED -Gradle Test Executor 11 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 2 finished executing tests. +org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED +Gradle Test Executor 6 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release - -org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED - -org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED - -org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED -Gradle Test Executor 12 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release - -org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testRemoteCraiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testIterateLocalCraiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalCraiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED +Gradle Test Executor 7 finished executing tests. org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 0 0 0 @@ -3979,27 +3909,17 @@ 33 33 33 34 34 34 35 35 35 -Gradle Test Executor 13 finished executing tests. 36 36 36 37 37 37 38 38 38 39 39 39 -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker 40 40 40 -WARNING: System::setSecurityManager will be removed in a future release 41 41 41 42 42 42 43 43 43 44 44 44 45 45 45 46 46 46 - -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Jun 12,2025 20:17] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - -org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 47 47 47 48 48 48 49 49 49 @@ -4014,11 +3934,6 @@ 58 58 58 59 59 59 60 60 60 - -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Jun 12,2025 20:17] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float - -org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 61 61 61 62 62 62 63 63 63 @@ -4038,11 +3953,6 @@ 77 77 77 78 78 78 79 79 79 - -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Jun 12,2025 20:17] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - -org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 80 80 80 81 81 81 82 82 82 @@ -4057,18 +3967,13 @@ 91 91 91 92 92 92 93 93 93 -Gradle Test Executor 8 finished executing tests. 94 94 94 95 95 95 -WARNING: A terminally deprecated method in java.lang.System has been called 96 96 96 97 97 97 98 98 98 99 99 99 -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) 100 100 100 -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release 101 101 101 102 102 102 103 103 103 @@ -4225,79 +4130,103 @@ 254 -2 254 255 -1 255 -org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED -Gradle Test Executor 18 finished executing tests. -Gradle Test Executor 19 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 5 finished executing tests. +org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED + +org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED +Gradle Test Executor 1 finished executing tests. + +org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 268 -Gradle Test Executor 9 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release + Random sort: 1941 -org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED -org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED -Gradle Test Executor 17 finished executing tests. +org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED + +org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigWig SKIPPED + +org.broad.igv.ucsc.bb.BBDataSourceTest > testUncompressedBigwig SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: Please consider reporting this to the maintainers of Gradle Test Executor 2 finished executing tests. +org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED + +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED + +org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT + bam + +org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED + +org.broad.igv.batch.CommandListenerTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 7 finished executing tests. + +org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED + +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test +Gradle Test Executor 10 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 5 finished executing tests. org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort (reversed): 178 -Gradle Test Executor 6 finished executing tests. + Random sort (reversed): 1724 +Gradle Test Executor 8 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release - Random sort (Arrays): 590 - Sorted sort: 76 - Reverse sorted sort: 79 - Almost sorted sort: 89 -Gradle Test Executor 10 finished executing tests. + Random sort (Arrays): 6390 + Sorted sort: 731 + Reverse sorted sort: 374 + Almost sorted sort: 639 + +org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release -Finished generating test XML results (0.015 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/test-results/test +Gradle Test Executor 9 finished executing tests. +Finished generating test XML results (0.271 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.051 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':',5,main]) completed. Took 3.545 secs. +Finished generating test html results (0.512 secs) into: /build/reproducible-path/igv-2.17.3+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':' Thread 2,5,main]) completed. Took 41.98 secs. -BUILD SUCCESSFUL in 11s +BUILD SUCCESSFUL in 3m 41s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4339,12 +4268,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2272524/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3425906 and its subdirectories -I: Current time: Thu Jun 12 20:17:21 -12 2025 -I: pbuilder-time-stamp: 1749802641 +I: removing directory /srv/workspace/pbuilder/2272524 and its subdirectories +I: Current time: Sat May 11 16:16:07 +14 2024 +I: pbuilder-time-stamp: 1715393767