Diff of the two buildlogs:

--
--- b1/build.log	2024-05-24 06:34:00.216819044 +0000
+++ b2/build.log	2024-05-24 11:13:42.218961125 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Jun 25 23:44:03 -12 2025
-I: pbuilder-time-stamp: 1750938243
+I: Current time: Fri May 24 20:34:08 +14 2024
+I: pbuilder-time-stamp: 1716532448
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -37,52 +37,84 @@
 dpkg-source: info: applying doxygen_mathjax_path.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/618549/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos11-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 24 06:34 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.21(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='6f9954309ad845499019060f8ec7c3e5'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='618549'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=f72b6a6f44894982993ca2e9531f8066
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2430123
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.M7WMS5I9/pbuilderrc_pwpS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.M7WMS5I9/b1 --logfile b1/build.log libsbml_5.20.2+dfsg-7.dsc'
-  SUDO_GID='111'
-  SUDO_UID='106'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://213.165.73.152:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.M7WMS5I9/pbuilderrc_iu5A --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.M7WMS5I9/b2 --logfile b2/build.log libsbml_5.20.2+dfsg-7.dsc'
+  SUDO_GID=111
+  SUDO_UID=106
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://46.16.76.132:3128
 I: uname -a
-  Linux ionos15-amd64 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Jun 24 14:05 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/618549/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 May 23 07:43 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -957,7 +989,7 @@
 Get: 797 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.0-2 [4512 B]
 Get: 798 http://deb.debian.org/debian unstable/main amd64 rdfind amd64 1.6.0-1+b1 [44.7 kB]
 Get: 799 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.2.1-1 [1437 kB]
-Fetched 542 MB in 25s (22.1 MB/s)
+Fetched 542 MB in 45s (12.0 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libkrb5support0:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19718 files and directories currently installed.)
@@ -3505,8 +3537,8 @@
 Setting up tzdata (2024a-4) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Thu Jun 26 11:46:56 UTC 2025.
-Universal Time is now:  Thu Jun 26 11:46:56 UTC 2025.
+Local time is now:      Fri May 24 06:47:08 UTC 2024.
+Universal Time is now:  Fri May 24 06:47:08 UTC 2024.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up liberror-perl (0.17029-2) ...
@@ -4719,7 +4751,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libsbml_5.20.2+dfsg-7_source.changes
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libsbml-5.20.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../libsbml_5.20.2+dfsg-7_source.changes
 dpkg-buildpackage: info: source package libsbml
 dpkg-buildpackage: info: source version 5.20.2+dfsg-7
 dpkg-buildpackage: info: source distribution unstable
@@ -4890,9 +4926,9 @@
 
    To contact the developers directly, email libsbml-team@googlegroups.com
 
-   Configured on host 'ionos15-amd64'
+   Configured on host 'i-capture-the-hostname'
      host type                       = Linux
-     host operating system           = Linux 6.7.12+bpo-amd64
+     host operating system           = Linux 6.1.0-21-amd64
      host CPU architecture           = x86_64
 
    General build flags:
@@ -4944,8 +4980,8 @@
 --   Compression support is enabled for .bz2 files
 -- 
 ----------------------------------------------------------------------
--- Configuring done (5.5s)
--- Generating done (0.4s)
+-- Configuring done (6.0s)
+-- Generating done (0.7s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -40043,6 +40079,9 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.cpp:1236: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
@@ -40053,38 +40092,28 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:488: warning: Found unknown command '@_tif_t'
@@ -40092,35 +40121,24 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:490: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:512: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:513: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -40131,19 +40149,26 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
@@ -40152,6 +40177,16 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -40163,180 +40198,106 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -40346,12 +40307,61 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
@@ -40361,115 +40371,138 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -40477,53 +40510,56 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag </_tem_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
@@ -40543,22 +40579,22 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:195: warning: Found unknown command '@_tclass_t'
@@ -63684,6 +63720,16 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2442: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2452: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2454: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
 GeneProductAssociation.cpp...
 Generating docs for file GeneProductAssociation.h...
 Generating docs for file GeneProductRef.cpp...
@@ -63767,17 +63813,7 @@
 Generating docs for file GraphicalObject.cpp...
 Generating docs for file GraphicalObject.h...
 Generating docs for file Layout.cpp...
-Generating/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+Generating/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t'
@@ -84266,7 +84302,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/793
 Running dot for graph 2/793
 Running dot for graph 3/793
@@ -88828,6 +88864,9 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2524: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.cpp:1236: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/EventAssignment.h:1180: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:560: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:561: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:562: warning: Found unknown command '@_tendif_t'
@@ -88838,38 +88877,28 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:717: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Deletion.h:481: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/validator/GroupsSBMLErrorTable.h:55: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.cpp:2592: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1656: warning: Found unknown command '@_tclass_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5030: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/GeneralGlyph.h:987: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1086: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.cpp:82: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaFormatter.h:91: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2437: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/CompartmentReference.h:923: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:365: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4126: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Group.h:1230: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:488: warning: Found unknown command '@_tif_t'
@@ -88877,35 +88906,24 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:490: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:512: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:513: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1535: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2052: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:355: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1754: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1676: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1556: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1557: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1533: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/RDFAnnotationParser.cpp:1545: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1243: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2257: warning: Found unknown command '@_tc_t'
@@ -88916,19 +88934,26 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1100: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:807: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:2101: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:950: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/groups/sbml/Member.h:1054: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2782: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3952: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.cpp:1218: warning: Found unknown command '@_tendcond_t'
@@ -88937,6 +88962,16 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Port.h:464: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/LocalParameter.h:1280: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:72: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLNamespaces.h:736: warning: Found unknown command '@_tp_t'
@@ -88948,180 +88983,106 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:741: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1246: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:545: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2089: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:467: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:617: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:618: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2260: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FbcAssociation.h:1000: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:761: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3742: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1545: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1546: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLErrorTable.h:52: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:748: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:614: warning: Found unknown command '@_tcopydoc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/SpeciesGlyph.h:305: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:933: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLDocumentPlugin.h:373: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6281: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:730: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6598: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1416: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5389: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:87: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:88: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:89: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:102: warning: Unsupported xml/html tag </_tcode_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2036: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/Objective.h:1644: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/FunctionTerm.h:1132: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1086: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2760: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Point.h:581: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:476: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1644: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.cpp:460: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/List.h:474: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1356: warning: explicit link request to '_tFluxBoundOperation_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxBound.h:1358: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1656: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:955: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3893: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1783: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:727: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.cpp:1315: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:999: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/FunctionDefinition.h:1000: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.cpp:388: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:473: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:474: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/validator/CompSBMLError.h:44: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:1835: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1430: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1431: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.cpp:364: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:497: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:498: warning: Found unknown command '@_tp_t'
@@ -89131,12 +89092,61 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Trigger.h:1116: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1828: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Parameter.h:1717: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:531: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/LineSegment.h:532: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4092: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/OutwardBindingSite.h:1244: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.h:454: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:581: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/DefaultTerm.h:662: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3911: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3594: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tlt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported symbol &_tgt_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3595: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6633: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5426: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:5427: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:2017: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3994: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1131: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1956: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Compartment.h:2300: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/MultiSpeciesType.h:1311: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
@@ -89146,115 +89156,138 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2423: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2424: warning: Unsupported symbol &_tnbsp_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Reaction.h:1987: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4405: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ModifierSpeciesReference.h:603: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:2163: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.cpp:473: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBMLExtension.h:694: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:935: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:936: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLAttributes.h:2284: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:344: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:774: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.cpp:400: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLErrorLog.h:424: warning: Found unknown command '@_tclass_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraintComponent.h:1195: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3541: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4028: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Rule.h:1475: warning: Found unknown command '@_tnote_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Constraint.h:1018: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:602: warning: Unsupported symbol &_trdquo_t; found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/TextGlyph.h:479: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/QualitativeSpecies.h:1185: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:903: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/InitialAssignment.h:1275: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLTriple.h:397: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:691: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:87: warning: Found unknown command '@_tstruct_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.h:88: warning: Found unknown command '@_tsbmlbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:4011: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AssignmentRule.h:822: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:516: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3825: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/AlgebraicRule.h:687: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:1940: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1469: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:675: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/RateRule.h:676: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/extension/SBasePlugin.h:1263: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/UserDefinedConstraint.h:1396: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:704: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1931: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:683: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:493: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/FluxObjective.h:1289: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/MathML.cpp:2206: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:105: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:106: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:107: warning: Found unknown command '@_tendif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag <_tcode_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.h:136: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1288: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:1865: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:871: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Output.h:1393: warning: explicit link request to '_tOutputTransitionEffect_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:337: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag <_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLDocument.h:2802: warning: Unsupported xml/html tag </_tcode_t> found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Input.h:1578: warning: explicit link request to '_tInputSign_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:426: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:427: warning: Found unknown command '@_tbrief_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_tldquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/extension/LayoutExtension.h:428: warning: Unsupported symbol &_trdquo_t; found
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/FormulaTokenizer.cpp:247: warning: Found unknown command '@_tendcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Event.h:1963: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2221: warning: Found unknown command '@_tc_t'
@@ -89262,53 +89295,56 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:126: warning: Found unknown command '@_tif_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:127: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/UnitKind.c:128: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3526: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:890: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBase.h:4251: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/ReplacedBy.h:304: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:3309: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/sbml/Transition.h:1998: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNode.h:1862: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/util/util.h:268: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLConvert.cpp:67: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:788: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2421: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLToken.h:2275: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2180: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:332: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLReader.h:494: warning: Found unknown command '@_tcopydoc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.cpp:2000: warning: Found unknown command '@_tendcond_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/KineticLaw.h:1485: warning: Found unknown command '@_tclass_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLError.h:1524: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLWriter.h:519: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SBMLError.h:1058: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/Submodel.h:1245: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/SpeciesReference.h:2006: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag </_tem_t> found
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/ListOf.h:830: warning: Unsupported xml/html tag <_tem_t> found
@@ -89328,22 +89364,22 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/xml/XMLNamespaces.h:564: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:548: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
+/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:898: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/annotation/CVTerm.h:1589: warning: explicit link request to '_tModelQualifierType_t_t' could not be resolved
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Model.h:6327: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Species.h:2345: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/comp/sbml/SBaseRef.h:1108: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/Unit.h:2420: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/math/ASTNode.h:195: warning: Found unknown command '@_tclass_t'
@@ -141741,7 +141777,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/1596
 Running dot for graph 2/1596
 Running dot for graph 3/1596
@@ -154899,6 +154935,7 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
 -path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt...
@@ -154985,8 +155022,7 @@
 Generating docs for example callExternalValidator.py...
 Generating docs for example convertSBML.py...
 Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
@@ -155606,7 +155642,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/127
 Running dot for graph 2/127
 Running dot for graph 3/127
@@ -155969,6 +156005,9 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
 -path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-math.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt...
@@ -156055,10 +156094,7 @@
 Generating docs for example callExternalValidator.py...
 Generating docs for example convertSBML.py...
 Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
@@ -156680,7 +156716,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/7
 Running dot for graph 2/7
 Running dot for graph 3/7
@@ -162225,6 +162261,7 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
 l/packages/qual/validator/QualSBMLError.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
 Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -162319,8 +162356,7 @@
 Generating docs for example translateMath.cpp...
 Generating docs for example unsetAnnotation.cpp...
 Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
@@ -164912,7 +164948,7 @@
 Generating Perl module output...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/1594
 Running dot for graph 2/1594
 Running dot for graph 3/1594
@@ -174774,6 +174810,13 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
 l/packages/qual/validator/QualSBMLError.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
 Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -174868,14 +174911,7 @@
 Generating docs for example translateMath.cpp...
 Generating docs for example unsetAnnotation.cpp...
 Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH
@@ -177839,7 +177875,7 @@
 writing tag file...
 Running plantuml with JAVA...
 Running dot...
-Generating dot graphs using 43 parallel threads...
+Generating dot graphs using 21 parallel threads...
 Running dot for graph 1/1
 Patching output file 1/1
 type lookup cache used 1/65536 hits=0 misses=1
@@ -177948,11 +177984,6 @@
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:268: warning: included file unsetAnnotation.cs is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:271: warning: included file unsetNotes.cs is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:272: warning: included file validateSBML.cs is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:274: warning: included file FlattenModel.cs is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:277: warning: included file SpecExample1.cs is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:280: warning: included file SpecExample2.cs is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:283: warning: included file SpecExample3.cs is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:286: warning: included file SpecExample4.cs is not found. Check your EXAMPLE_PATH
 l-5.20.2+dfsg/docs/src/libsbml-news.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-news.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-other.txt...
@@ -178047,7 +178078,12 @@
 Generating docs for example unsetAnnotation.cs...
 Generating docs for example unsetNotes.cs...
 Generating docs for example validateSBML.cs...
-Generating docs for exa/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:291: warning: included file fbc_example1.cs is not found. Check your EXAMPLE_PATH
+Generating docs for exa/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:274: warning: included file FlattenModel.cs is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:277: warning: included file SpecExample1.cs is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:280: warning: included file SpecExample2.cs is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:283: warning: included file SpecExample3.cs is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:286: warning: included file SpecExample4.cs is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:291: warning: included file fbc_example1.cs is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:295: warning: included file convertCobraToFbc.cs is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:299: warning: included file convertFbcToCobra.cs is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.2+dfsg/docs/src/libsbml-csharp-example-files.txt:301: warning: included file promoteParameters.cs is not found. Check your EXAMPLE_PATH
@@ -178239,7 +178275,7 @@
 1:  TestMultipleNamespaces
 1:  SBMLCompCheckConsistency
 1: 100%: Checks: 14, Failures: 0, Errors: 0
- 1/67 Test  #1: test_comp_extensions_run ......................   Passed    0.26 sec
+ 1/67 Test  #1: test_comp_extensions_run ......................   Passed    0.61 sec
 test 2
       Start  2: test_comp_sbase_run
 
@@ -178260,7 +178296,7 @@
 2:  comp_sBaseRef
 2:  comp_submodel
 2: 100%: Checks: 105, Failures: 0, Errors: 0
- 2/67 Test  #2: test_comp_sbase_run ...........................   Passed    0.39 sec
+ 2/67 Test  #2: test_comp_sbase_run ...........................   Passed    0.88 sec
 test 3
       Start  3: test_comp_util_run
 
@@ -178278,7 +178314,7 @@
 3:  SBMLCompFlatteningNewFlags
 3:  SBMLCompFlatteningConverterStripPackage
 3: 100%: Checks: 365, Failures: 0, Errors: 0
- 3/67 Test  #3: test_comp_util_run ............................   Passed    3.77 sec
+ 3/67 Test  #3: test_comp_util_run ............................   Passed    7.86 sec
 test 4
       Start  4: test_comp_validator_run
 
@@ -178298,7 +178334,7 @@
 4: 100%: Checks: 14, Failures: 0
 4: Testing Unit Consistency Constraints (10500 - 10599).
 4: 100%: Checks: 22, Failures: 0
- 4/67 Test  #4: test_comp_validator_run .......................   Passed    0.37 sec
+ 4/67 Test  #4: test_comp_validator_run .......................   Passed    1.01 sec
 test 5
       Start  5: test_sbml_package_fbc_run
 
@@ -178312,7 +178348,7 @@
 5:  ReadFbcExtension
 5:  FbcAssociation
 5: 100%: Checks: 38, Failures: 0, Errors: 0
- 5/67 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.16 sec
+ 5/67 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.50 sec
 test 6
       Start  6: test_fbc_validator_run
 
@@ -178330,7 +178366,7 @@
 6: 100%: Checks: 248, Failures: 0
 6: Testing Id Consistency Constraints (10300 - 10399).
 6: 100%: Checks: 13, Failures: 0
- 6/67 Test  #6: test_fbc_validator_run ........................   Passed    0.46 sec
+ 6/67 Test  #6: test_fbc_validator_run ........................   Passed    1.21 sec
 test 7
       Start  7: test_extension_package_groups_run
 
@@ -178344,7 +178380,7 @@
 7:  ReadGroupsExtension
 7:  GroupsModelPlugin
 7: 100%: Checks: 25, Failures: 0, Errors: 0
- 7/67 Test  #7: test_extension_package_groups_run .............   Passed    0.08 sec
+ 7/67 Test  #7: test_extension_package_groups_run .............   Passed    0.39 sec
 test 8
       Start  8: test_groups_validator_run
 
@@ -178362,7 +178398,7 @@
 8: 100%: Checks: 95, Failures: 0
 8: Testing Id Consistency Constraints (10300 - 10399).
 8: 100%: Checks: 11, Failures: 0
- 8/67 Test  #8: test_groups_validator_run .....................   Passed    0.05 sec
+ 8/67 Test  #8: test_groups_validator_run .....................   Passed    0.21 sec
 test 9
       Start  9: test_l3v2extendedmath_validator_run
 
@@ -178380,7 +178416,7 @@
 9: 100%: Checks: 4, Failures: 0
 9: Testing Unit Consistency Constraints (10500 - 10599).
 9: 100%: Checks: 6, Failures: 0
- 9/67 Test  #9: test_l3v2extendedmath_validator_run ...........   Passed    0.01 sec
+ 9/67 Test  #9: test_l3v2extendedmath_validator_run ...........   Passed    0.06 sec
 test 10
       Start 10: test_extension_package_l3v2extendedmath_run
 
@@ -178394,7 +178430,7 @@
 10:  ReadL3v2EMExtension
 10:  ReadWriteL3v2Infix
 10: 100%: Checks: 18, Failures: 0, Errors: 0
-10/67 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.05 sec
+10/67 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.49 sec
 test 11
       Start 11: test_sbml_package_layout_run
 
@@ -178423,7 +178459,7 @@
 11:  SBMLHandler
 11:  LayoutWriting
 11: 100%: Checks: 288, Failures: 0, Errors: 0
-11/67 Test #11: test_sbml_package_layout_run ..................   Passed    0.86 sec
+11/67 Test #11: test_sbml_package_layout_run ..................   Passed    5.29 sec
 test 12
       Start 12: test_layout_validator_run
 
@@ -178441,7 +178477,7 @@
 12: 100%: Checks: 223, Failures: 0
 12: Testing Id Consistency Constraints (10300 - 10399).
 12: 100%: Checks: 18, Failures: 0
-12/67 Test #12: test_layout_validator_run .....................   Passed    0.47 sec
+12/67 Test #12: test_layout_validator_run .....................   Passed    1.46 sec
 test 13
       Start 13: test_extension_package_qual_run
 
@@ -178455,7 +178491,7 @@
 13:  ReadQualExtension
 13:  GetAllElements
 13: 100%: Checks: 20, Failures: 0, Errors: 0
-13/67 Test #13: test_extension_package_qual_run ...............   Passed    0.05 sec
+13/67 Test #13: test_extension_package_qual_run ...............   Passed    0.30 sec
 test 14
       Start 14: test_sbml_package_qual_run
 
@@ -178473,7 +178509,7 @@
 14:  ListOfFunctionTerms
 14:  CopyAndClone
 14: 100%: Checks: 73, Failures: 0, Errors: 0
-14/67 Test #14: test_sbml_package_qual_run ....................   Passed    0.24 sec
+14/67 Test #14: test_sbml_package_qual_run ....................   Passed    0.89 sec
 test 15
       Start 15: test_qual_validator_run
 
@@ -178493,7 +178529,7 @@
 15: 100%: Checks: 4, Failures: 0
 15: Testing Math Consistency Constraints (10200 - 10299).
 15: 100%: Checks: 3, Failures: 0
-15/67 Test #15: test_qual_validator_run .......................   Passed    0.09 sec
+15/67 Test #15: test_qual_validator_run .......................   Passed    0.11 sec
 test 16
       Start 16: test_sbml_package_render_run
 
@@ -178532,7 +178568,7 @@
 16:  RenderReading
 16:  RenderWriting
 16: 100%: Checks: 136, Failures: 0, Errors: 0
-16/67 Test #16: test_sbml_package_render_run ..................   Passed    1.14 sec
+16/67 Test #16: test_sbml_package_render_run ..................   Passed    4.59 sec
 test 17
       Start 17: test_render_validator_run
 
@@ -178548,7 +178584,7 @@
 17: 
 17: Testing General XML Consistency Constraints (20000 - 29999).
 17: 100%: Checks: 111, Failures: 0
-17/67 Test #17: test_render_validator_run .....................   Passed    0.08 sec
+17/67 Test #17: test_render_validator_run .....................   Passed    0.11 sec
 test 18
       Start 18: test_sbml_annotation_run
 
@@ -178575,7 +178611,7 @@
 18:  RDFAnnotationV4
 18:  UnusualRDFAnnotation
 18: 100%: Checks: 193, Failures: 0, Errors: 0
-18/67 Test #18: test_sbml_annotation_run ......................   Passed    1.18 sec
+18/67 Test #18: test_sbml_annotation_run ......................   Passed    4.57 sec
 test 19
       Start 19: test_sbml_conversion_run
 
@@ -178597,7 +178633,7 @@
 19:  RateOfConverter
 19:  SBMLRateRuleConverter
 19: 100%: Checks: 188, Failures: 0, Errors: 0
-19/67 Test #19: test_sbml_conversion_run ......................   Passed    1.08 sec
+19/67 Test #19: test_sbml_conversion_run ......................   Passed    3.79 sec
 test 20
       Start 20: test_sbml_extension_run
 
@@ -178616,7 +178652,7 @@
 20:  SBMLExtensionRegistry
 20:  TestUnknownPackages
 20: 100%: Checks: 30, Failures: 0, Errors: 0
-20/67 Test #20: test_sbml_extension_run .......................   Passed    0.10 sec
+20/67 Test #20: test_sbml_extension_run .......................   Passed    0.43 sec
 test 21
       Start 21: test_sbml_math_run
 
@@ -178644,7 +178680,7 @@
 21:  TestInferRnFunctions
 21:  TestDerivFunctions
 21: 100%: Checks: 739, Failures: 0, Errors: 0
-21/67 Test #21: test_sbml_math_run ............................   Passed    4.29 sec
+21/67 Test #21: test_sbml_math_run ............................   Passed    7.77 sec
 test 22
       Start 22: test_sbml_sbml_run
 
@@ -178760,7 +178796,7 @@
 22:  SBaseIdName
 22:  Generic Attribute Functions
 22: 100%: Checks: 1746, Failures: 0, Errors: 0
-22/67 Test #22: test_sbml_sbml_run ............................   Passed    4.94 sec
+22/67 Test #22: test_sbml_sbml_run ............................   Passed   20.28 sec
 test 23
       Start 23: test_sbml_units_run
 
@@ -178781,7 +178817,7 @@
 23:  UnitFormulaFormatter3
 23:  DerivedUnitDefinitionUndefined
 23: 100%: Checks: 178, Failures: 0, Errors: 0
-23/67 Test #23: test_sbml_units_run ...........................   Passed    0.97 sec
+23/67 Test #23: test_sbml_units_run ...........................   Passed    2.92 sec
 test 24
       Start 24: test_sbml_util_run
 
@@ -178794,7 +178830,7 @@
 24:  Stack
 24:  StringBuffer
 24: 100%: Checks: 57, Failures: 0, Errors: 0
-24/67 Test #24: test_sbml_util_run ............................   Passed    0.09 sec
+24/67 Test #24: test_sbml_util_run ............................   Passed    0.47 sec
 test 25
       Start 25: test_sbml_validator_run
 
@@ -178871,7 +178907,7 @@
 25: 100%: Checks: 30, Failures: 0
 25: Testing Modeling Practice Constraints (80000 - 89999).
 25: 100%: Checks: 56, Failures: 0
-25/67 Test #25: test_sbml_validator_run .......................   Passed    4.54 sec
+25/67 Test #25: test_sbml_validator_run .......................   Passed    8.74 sec
 test 26
       Start 26: test_sbml_xml_run
 
@@ -178893,11 +178929,11 @@
 26:  XMLErrorLog
 26:  XMLInputStream
 26:  XMLOutputStream
-26: <!-- Created by foo version bar on 2025-06-26 00:50 with libSBML version 5.20.2. -->
+26: <!-- Created by foo version bar on 2024-05-25 00:50 with libSBML version 5.20.2. -->
 26:  XMLAttributesC
 26:  XMLExceptions
 26: 100%: Checks: 131, Failures: 0, Errors: 0
-26/67 Test #26: test_sbml_xml_run .............................   Passed    0.36 sec
+26/67 Test #26: test_sbml_xml_run .............................   Passed    1.25 sec
 test 27
       Start 27: test_csharp_bindings
 
@@ -178911,7 +178947,7 @@
 27: ...........................................................................................................................................................................................................................
 27: All tests passed.
 27: 
-27/67 Test #27: test_csharp_bindings ..........................   Passed    0.37 sec
+27/67 Test #27: test_csharp_bindings ..........................   Passed    1.06 sec
 test 28
       Start 28: test_csharp_bindings_full
 
@@ -178925,14 +178961,14 @@
 28: Running the tests with: 
 28: 	Data Directory:   /build/reproducible-path/libsbml-5.20.2+dfsg/src/sbml/test/test-data
 28: 
-28: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2025-06-26 00:50 with libSBML version 5.20.2. -->
+28: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2024-05-25 00:50 with libSBML version 5.20.2. -->
 28: .....................................
 28: 
 28: Total Number of Tests 1830, failures 0
 28: 
 28: All tests passed.
 28: 
-28/67 Test #28: test_csharp_bindings_full .....................   Passed    1.26 sec
+28/67 Test #28: test_csharp_bindings_full .....................   Passed    2.47 sec
 test 29
       Start 29: test_java_binding
 
@@ -178941,8 +178977,8 @@
 29: Environment variables: 
 29:  LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/java:
 29: Test timeout computed to be: 3000
-29: ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
-29/67 Test #29: test_java_binding .............................   Passed    0.74 sec
+29: .......................................................................................................................................................................
+29/67 Test #29: test_java_binding .............................   Passed    0.87 sec
 test 30
       Start 30: test_java_printversion
 
@@ -178950,7 +178986,7 @@
 30: Working Directory: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/java
 30: Test timeout computed to be: 3000
 30: .
-30/67 Test #30: test_java_printversion ........................   Passed    0.16 sec
+30/67 Test #30: test_java_printversion ........................   Passed    0.55 sec
 test 31
       Start 31: test_perl_binding
 
@@ -179001,9 +179037,9 @@
 31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok
 31: /build/reproducible-path/libsbml-5.20.2+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok
 31: All tests successful.
-31: Files=41, Tests=3364,  7 wallclock secs ( 0.33 usr  0.05 sys +  6.39 cusr  0.99 csys =  7.76 CPU)
+31: Files=41, Tests=3364, 13 wallclock secs ( 0.44 usr  0.11 sys + 10.55 cusr  1.71 csys = 12.81 CPU)
 31: Result: PASS
-31/67 Test #31: test_perl_binding .............................   Passed    7.66 sec
+31/67 Test #31: test_perl_binding .............................   Passed   13.93 sec
 test 32
       Start 32: test_python_binding
 
@@ -179012,13 +179048,13 @@
 32: Test timeout computed to be: 3000
 32: /build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python/test.py:55: DeprecationWarning: unittest.makeSuite() is deprecated and will be removed in Python 3.13. Please use unittest.TestLoader.loadTestsFromTestCase() instead.
 32:   suite.addTest(unittest.makeSuite(class_name))
-32: .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2025-06-26 00:50 with libSBML version 5.20.2. -->
-32: ..........................................................................................................................................................................................................................................................................................................................................................................
+32: .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2024-05-25 00:51 with libSBML version 5.20.2. -->
+32: ..................................................................................................................................................................................................................................................................................................................................................................
 32: ----------------------------------------------------------------------
-32: Ran 1819 tests in 0.405s
+32: Ran 1819 tests in 0.516s
 32: 
 32: OK
-32/67 Test #32: test_python_binding ...........................   Passed    1.71 sec
+32/67 Test #32: test_python_binding ...........................   Passed    2.31 sec
 test 33
       Start 33: test_python_printversion
 
@@ -179027,7 +179063,7 @@
 33: Environment variables: 
 33:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 33: Test timeout computed to be: 3000
-33/67 Test #33: test_python_printversion ......................   Passed    0.18 sec
+33/67 Test #33: test_python_printversion ......................   Passed    0.26 sec
 test 34
       Start 34: test_python_addCVTerms
 
@@ -179036,7 +179072,7 @@
 34: Environment variables: 
 34:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 34: Test timeout computed to be: 3000
-34/67 Test #34: test_python_addCVTerms ........................   Passed    0.19 sec
+34/67 Test #34: test_python_addCVTerms ........................   Passed    0.28 sec
 test 35
       Start 35: test_python_addingEvidenceCodes_1
 
@@ -179045,7 +179081,7 @@
 35: Environment variables: 
 35:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 35: Test timeout computed to be: 3000
-35/67 Test #35: test_python_addingEvidenceCodes_1 .............   Passed    0.23 sec
+35/67 Test #35: test_python_addingEvidenceCodes_1 .............   Passed    0.27 sec
 test 36
       Start 36: test_python_addingEvidenceCodes_2
 
@@ -179054,7 +179090,7 @@
 36: Environment variables: 
 36:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 36: Test timeout computed to be: 3000
-36/67 Test #36: test_python_addingEvidenceCodes_2 .............   Passed    0.18 sec
+36/67 Test #36: test_python_addingEvidenceCodes_2 .............   Passed    0.28 sec
 test 37
       Start 37: test_python_addModelHistory
 
@@ -179067,7 +179103,7 @@
 37: Set created date:      succeeded
 37: Set modified date:     succeeded
 37: Set model history:     unknown
-37/67 Test #37: test_python_addModelHistory ...................   Passed    0.17 sec
+37/67 Test #37: test_python_addModelHistory ...................   Passed    0.34 sec
 test 38
       Start 38: test_python_append_to_note
 
@@ -179084,7 +179120,7 @@
 38: Body after change: 
 38: <body xmlns="http://www.w3.org/1999/xhtml">
 38:   <p xmlns="http://www.w3.org/1999/xhtml">Some notes</p>a new note</body>
-38/67 Test #38: test_python_append_to_note ....................   Passed    0.18 sec
+38/67 Test #38: test_python_append_to_note ....................   Passed    0.27 sec
 test 39
       Start 39: test_python_appendAnnotation
 
@@ -179093,7 +179129,7 @@
 39: Environment variables: 
 39:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 39: Test timeout computed to be: 3000
-39/67 Test #39: test_python_appendAnnotation ..................   Passed    0.18 sec
+39/67 Test #39: test_python_appendAnnotation ..................   Passed    0.33 sec
 test 40
       Start 40: test_python_convertSBML
 
@@ -179106,7 +179142,7 @@
 40: 
 40: Conversion completed.
 40: 
-40/67 Test #40: test_python_convertSBML .......................   Passed    0.31 sec
+40/67 Test #40: test_python_convertSBML .......................   Passed    0.44 sec
 test 41
       Start 41: test_python_createExampleSBML
 
@@ -179124,7 +179160,7 @@
 41: Notice: encountered 1 validation warning in model 'functionExample'.
 41: 
 41: Wrote file 'functiondef.xml'
-41/67 Test #41: test_python_createExampleSBML .................   Passed    0.19 sec
+41/67 Test #41: test_python_createExampleSBML .................   Passed    0.37 sec
 test 42
       Start 42: test_python_createSimpleModel
 
@@ -179176,7 +179212,7 @@
 42:   </model>
 42: </sbml>
 42: 
-42/67 Test #42: test_python_createSimpleModel .................   Passed    0.17 sec
+42/67 Test #42: test_python_createSimpleModel .................   Passed    0.33 sec
 test 43
       Start 43: test_python_echoSBML
 
@@ -179186,7 +179222,7 @@
 43:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 43: Test timeout computed to be: 3000
 43: [OK] Echoed /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml
-43/67 Test #43: test_python_echoSBML ..........................   Passed    0.18 sec
+43/67 Test #43: test_python_echoSBML ..........................   Passed    0.32 sec
 test 44
       Start 44: test_python_evaluateCustomMath
 
@@ -179196,7 +179232,7 @@
 44:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 44: Test timeout computed to be: 3000
 44: 2*3+4 = 10.0
-44/67 Test #44: test_python_evaluateCustomMath ................   Passed    0.16 sec
+44/67 Test #44: test_python_evaluateCustomMath ................   Passed    0.35 sec
 test 45
       Start 45: test_python_getAllElementsWithNotes
 
@@ -179207,11 +179243,11 @@
 45: Test timeout computed to be: 3000
 45: 
 45:             filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-45:       read time (ms): 1.456298828125
+45:       read time (ms): 2.056396484375
 45:     searching ......:
-45:     search time (ms): 0.193359375
+45:     search time (ms): 0.328369140625
 45:  elements with notes: 0
-45/67 Test #45: test_python_getAllElementsWithNotes ...........   Passed    0.22 sec
+45/67 Test #45: test_python_getAllElementsWithNotes ...........   Passed    0.37 sec
 test 46
       Start 46: test_python_inlineInitialAssignments
 
@@ -179220,7 +179256,7 @@
 46: Environment variables: 
 46:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 46: Test timeout computed to be: 3000
-46/67 Test #46: test_python_inlineInitialAssignments ..........   Passed    0.19 sec
+46/67 Test #46: test_python_inlineInitialAssignments ..........   Passed    0.28 sec
 test 47
       Start 47: test_python_printAnnotation
 
@@ -179231,7 +179267,7 @@
 47: Test timeout computed to be: 3000
 47: filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 47: 
-47/67 Test #47: test_python_printAnnotation ...................   Passed    0.36 sec
+47/67 Test #47: test_python_printAnnotation ...................   Passed    0.25 sec
 test 48
       Start 48: test_python_printMath
 
@@ -179247,7 +179283,7 @@
 48: 
 48: 
 48: 
-48/67 Test #48: test_python_printMath .........................   Passed    0.31 sec
+48/67 Test #48: test_python_printMath .........................   Passed    0.26 sec
 test 49
       Start 49: test_python_printRegisteredPackages
 
@@ -179267,7 +179303,7 @@
 49: 	qual
 49: 
 49: 
-49/67 Test #49: test_python_printRegisteredPackages ...........   Passed    0.26 sec
+49/67 Test #49: test_python_printRegisteredPackages ...........   Passed    0.25 sec
 test 50
       Start 50: test_python_printSBML
 
@@ -179293,7 +179329,7 @@
 50:              events: 0
 50: 
 50: 
-50/67 Test #50: test_python_printSBML .........................   Passed    0.16 sec
+50/67 Test #50: test_python_printSBML .........................   Passed    0.25 sec
 test 51
       Start 51: test_python_printsupported
 
@@ -179314,7 +179350,7 @@
 51: 	SBML Level: 3 Version: 1
 51: 	SBML Level: 3 Version: 2
 51: 
-51/67 Test #51: test_python_printsupported ....................   Passed    0.18 sec
+51/67 Test #51: test_python_printsupported ....................   Passed    0.24 sec
 test 52
       Start 52: test_python_printUnits
 
@@ -179334,7 +179370,7 @@
 52: Reaction 1: 
 52: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
 52:         undeclared units: no
-52/67 Test #52: test_python_printUnits ........................   Passed    0.23 sec
+52/67 Test #52: test_python_printUnits ........................   Passed    0.32 sec
 test 53
       Start 53: test_python_promoteParameters
 
@@ -179344,7 +179380,7 @@
 53:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 53: Test timeout computed to be: 3000
 53: [OK] wrote promoteParameters.out.xml
-53/67 Test #53: test_python_promoteParameters .................   Passed    0.19 sec
+53/67 Test #53: test_python_promoteParameters .................   Passed    0.36 sec
 test 54
       Start 54: test_python_readSBML
 
@@ -179356,10 +179392,10 @@
 54: 
 54:             filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 54:            file size: 3930
-54:       read time (ms): 1.5897750854492188
+54:       read time (ms): 1.6286373138427734
 54:  validation error(s): 0
 54: 
-54/67 Test #54: test_python_readSBML ..........................   Passed    0.23 sec
+54/67 Test #54: test_python_readSBML ..........................   Passed    0.31 sec
 test 55
       Start 55: test_python_replaceOneFD
 
@@ -179368,7 +179404,7 @@
 55: Environment variables: 
 55:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 55: Test timeout computed to be: 3000
-55/67 Test #55: test_python_replaceOneFD ......................   Passed    0.17 sec
+55/67 Test #55: test_python_replaceOneFD ......................   Passed    0.38 sec
 test 56
       Start 56: test_python_setIdFromNames
 
@@ -179379,11 +179415,11 @@
 56: Test timeout computed to be: 3000
 56: 
 56:             filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-56:       read time (ms): 1.450439453125
-56:     rename time (ms): 0.1630859375
-56:      write time (ms): 0.508544921875
+56:       read time (ms): 1.676513671875
+56:     rename time (ms): 0.208984375
+56:      write time (ms): 41.71728515625
 56: 
-56/67 Test #56: test_python_setIdFromNames ....................   Passed    0.20 sec
+56/67 Test #56: test_python_setIdFromNames ....................   Passed    0.27 sec
 test 57
       Start 57: test_python_setNamesFromIds
 
@@ -179394,11 +179430,11 @@
 57: Test timeout computed to be: 3000
 57: 
 57:             filename: /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-57:       read time (ms): 1.418212890625
-57:     rename time (ms): 0.343017578125
-57:      write time (ms): 0.54541015625
+57:       read time (ms): 1.525390625
+57:     rename time (ms): 0.37353515625
+57:      write time (ms): 139.0810546875
 57: 
-57/67 Test #57: test_python_setNamesFromIds ...................   Passed    0.20 sec
+57/67 Test #57: test_python_setNamesFromIds ...................   Passed    0.36 sec
 test 58
       Start 58: test_python_unsetAnnotation
 
@@ -179407,7 +179443,7 @@
 58: Environment variables: 
 58:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 58: Test timeout computed to be: 3000
-58/67 Test #58: test_python_unsetAnnotation ...................   Passed    0.17 sec
+58/67 Test #58: test_python_unsetAnnotation ...................   Passed    0.23 sec
 test 59
       Start 59: test_python_unsetNotes
 
@@ -179416,7 +179452,7 @@
 59: Environment variables: 
 59:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 59: Test timeout computed to be: 3000
-59/67 Test #59: test_python_unsetNotes ........................   Passed    0.19 sec
+59/67 Test #59: test_python_unsetNotes ........................   Passed    0.29 sec
 test 60
       Start 60: test_python_validateSBML
 
@@ -179428,15 +179464,15 @@
 60: ---------------------------------------------------------------------------
 60:                  filename : /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 60:          file size (byte) : 3930
-60:            read time (ms) : 1.459837
-60:         c-check time (ms) : 3.401279
+60:            read time (ms) : 1.415014
+60:         c-check time (ms) : 2.846003
 60:       validation error(s) : 0
 60:     (consistency error(s)): 0
 60:     validation warning(s) : 0
 60:   (consistency warning(s)): 0
 60: ---------------------------------------------------------------------------
 60: Validated 1 files, 1 valid files, 0 invalid files
-60/67 Test #60: test_python_validateSBML ......................   Passed    0.19 sec
+60/67 Test #60: test_python_validateSBML ......................   Passed    0.23 sec
 test 61
       Start 61: test_python_stringInput
 
@@ -179449,7 +179485,7 @@
 61: 
 61: <class 'str'>
 61: <class 'str'>
-61/67 Test #61: test_python_stringInput .......................   Passed    0.16 sec
+61/67 Test #61: test_python_stringInput .......................   Passed    0.25 sec
 test 62
       Start 62: test_python_stripPackage
 
@@ -179459,7 +179495,7 @@
 62:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 62: Test timeout computed to be: 3000
 62: [OK] stripped package 'fbc' from /build/reproducible-path/libsbml-5.20.2+dfsg/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml
-62/67 Test #62: test_python_stripPackage ......................   Passed    0.17 sec
+62/67 Test #62: test_python_stripPackage ......................   Passed    0.50 sec
 test 63
       Start 63: test_python_fbc_fbc_example1
 
@@ -179468,7 +179504,7 @@
 63: Environment variables: 
 63:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 63: Test timeout computed to be: 3000
-63/67 Test #63: test_python_fbc_fbc_example1 ..................   Passed    0.17 sec
+63/67 Test #63: test_python_fbc_fbc_example1 ..................   Passed    0.26 sec
 test 64
       Start 64: test_python_groups_groups_example1
 
@@ -179477,7 +179513,7 @@
 64: Environment variables: 
 64:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 64: Test timeout computed to be: 3000
-64/67 Test #64: test_python_groups_groups_example1 ............   Passed    0.16 sec
+64/67 Test #64: test_python_groups_groups_example1 ............   Passed    0.22 sec
 test 65
       Start 65: test_python_layout_example1_L3
 
@@ -179486,7 +179522,7 @@
 65: Environment variables: 
 65:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 65: Test timeout computed to be: 3000
-65/67 Test #65: test_python_layout_example1_L3 ................   Passed    0.21 sec
+65/67 Test #65: test_python_layout_example1_L3 ................   Passed    0.35 sec
 test 66
       Start 66: test_python_layout_example1
 
@@ -179495,7 +179531,7 @@
 66: Environment variables: 
 66:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 66: Test timeout computed to be: 3000
-66/67 Test #66: test_python_layout_example1 ...................   Passed    0.23 sec
+66/67 Test #66: test_python_layout_example1 ...................   Passed    0.30 sec
 test 67
       Start 67: test_python_qual_qual_example1
 
@@ -179504,11 +179540,11 @@
 67: Environment variables: 
 67:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.2+dfsg/build/src/bindings/python:
 67: Test timeout computed to be: 3000
-67/67 Test #67: test_python_qual_qual_example1 ................   Passed    0.18 sec
+67/67 Test #67: test_python_qual_qual_example1 ................   Passed    0.28 sec
 
 100% tests passed, 0 tests failed out of 67
 
-Total Test time (real) =  45.62 sec
+Total Test time (real) = 109.03 sec
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg/build'
    create-stamp debian/debhelper-build-stamp
    dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -180100,7 +180136,8 @@
 	mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \
     fi ; \
 done
-+ [ -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.11/site-packages/ ]
++ for pyv in python3.11
++ '[' -d /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.11/site-packages/ ']'
 + mkdir -p /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.11/dist-packages
 + mv /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.11/site-packages/libsbml /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/python3.11/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr/lib/python3.11/dist-packages
 find /build/reproducible-path/libsbml-5.20.2+dfsg/debian/tmp/usr -type f -name "*.js" -delete
@@ -180127,15 +180164,17 @@
 	rmdir ${madir}/x86_64-linux-gnu ; \
     fi ; \
 done
-+ find debian -name x86_64-linux-gnu -type d
-+ sort
-+ uniq
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ]
-+ echo Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
+++ find debian -name x86_64-linux-gnu -type d
+++ sort
+++ uniq
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu ']'
++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place'
 Moving contents of wrong directory debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu into place
 + mv debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/perl5 debian/tmp/usr/lib/x86_64-linux-gnu
 + rmdir debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu
-+ [ -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ]
++ for madir in `find debian -name x86_64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/x86_64-linux-gnu/x86_64-linux-gnu/x86_64-linux-gnu ']'
 find debian -type f -name "_form*" -delete
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.2+dfsg'
    dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -180191,19 +180230,19 @@
    dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel
 dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.2+dfsg-7_amd64.deb'.
+dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.2+dfsg-7_amd64.deb'.
+dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.2+dfsg-7_amd64.deb'.
+dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.2+dfsg-7_amd64.deb'.
+dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.2+dfsg-7_amd64.deb'.
+dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.2+dfsg-7_all.deb'.
 dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'libsbml5-cil-dbgsym' in '../libsbml5-cil-dbgsym_5.20.2+dfsg-7_amd64.deb'.
-dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.2+dfsg-7_all.deb'.
 dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.2+dfsg-7_all.deb'.
 dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.2+dfsg-7_all.deb'.
+dpkg-deb: building package 'libsbml5-cil' in '../libsbml5-cil_5.20.2+dfsg-7_amd64.deb'.
 dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.2+dfsg-7_all.deb'.
 dpkg-deb: building package 'libsbml5-cil-doc' in '../libsbml5-cil-doc_5.20.2+dfsg-7_all.deb'.
  dpkg-genbuildinfo --build=binary -O../libsbml_5.20.2+dfsg-7_amd64.buildinfo
@@ -180214,12 +180253,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: not including original source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2430123/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/618549 and its subdirectories
-I: Current time: Thu Jun 26 00:56:59 -12 2025
-I: pbuilder-time-stamp: 1750942619
+I: removing directory /srv/workspace/pbuilder/2430123 and its subdirectories
+I: Current time: Sat May 25 01:13:40 +14 2024
+I: pbuilder-time-stamp: 1716549220