Diff of the two buildlogs:

--
--- b1/build.log	2024-04-21 13:25:49.324384333 +0000
+++ b2/build.log	2024-04-21 13:46:47.970513477 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Sun Apr 21 00:34:10 -12 2024
-I: pbuilder-time-stamp: 1713702850
+I: Current time: Sun May 25 09:48:55 +14 2025
+I: pbuilder-time-stamp: 1748116135
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
 I: copying local configuration
@@ -25,52 +25,84 @@
 dpkg-source: info: unpacking massxpert2_8.3.0-1.debian.tar.xz
 I: using fakeroot in build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/933438/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos5-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 May 24 19:49 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
-  DISTRIBUTION='unstable'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.21(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
+  DIRSTACK=()
+  DISTRIBUTION=unstable
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='e4da3aa2cda3469eb1f1f9c55051e5dc'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='933438'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=25bd4aabe639447c9c63018bda6ef905
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=1032906
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wn7i0oOc/pbuilderrc_NgQO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wn7i0oOc/b1 --logfile b1/build.log massxpert2_8.3.0-1.dsc'
-  SUDO_GID='110'
-  SUDO_UID='105'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://78.137.99.97:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wn7i0oOc/pbuilderrc_9uKH --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wn7i0oOc/b2 --logfile b2/build.log massxpert2_8.3.0-1.dsc'
+  SUDO_GID=110
+  SUDO_UID=105
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://213.165.73.152:3128
 I: uname -a
-  Linux ionos1-amd64 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Apr 21 07:14 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/933438/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 May 24 13:36 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -612,7 +644,7 @@
 Get: 474 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
 Get: 475 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2023.20240207-1 [22.0 MB]
 Get: 476 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-extra all 2023.20240207-1 [629 MB]
-Fetched 1007 MB in 45s (22.4 MB/s)
+Fetched 1007 MB in 24s (41.9 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libapparmor1:amd64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19696 files and directories currently installed.)
@@ -2155,8 +2187,8 @@
 Setting up tzdata (2024a-3) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Sun Apr 21 12:45:35 UTC 2024.
-Universal Time is now:  Sun Apr 21 12:45:35 UTC 2024.
+Local time is now:      Sat May 24 19:52:17 UTC 2025.
+Universal Time is now:  Sat May 24 19:52:17 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libboost-atomic1.83.0:amd64 (1.83.0-2.1+b1) ...
@@ -2775,7 +2807,11 @@
 fakeroot is already the newest version (1.34-1).
 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 I: Building the package
-I: Running cd /build/reproducible-path/massxpert2-8.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../massxpert2_8.3.0-1_source.changes
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for unstable
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/massxpert2-8.3.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../massxpert2_8.3.0-1_source.changes
 dpkg-buildpackage: info: source package massxpert2
 dpkg-buildpackage: info: source version 8.3.0-1
 dpkg-buildpackage: info: source distribution unstable
@@ -2783,11 +2819,11 @@
  dpkg-source --before-build .
 dpkg-buildpackage: info: host architecture amd64
  fakeroot debian/rules clean
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 dh clean
    debian/rules override_dh_clean
 make[1]: Entering directory '/build/reproducible-path/massxpert2-8.3.0'
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 dh_clean
 	rm -f debian/debhelper-build-stamp
 	rm -rf debian/.debhelper/
@@ -2808,13 +2844,13 @@
 rm -f compile_commands.json
 make[1]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0'
  debian/rules build
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 dh build
    dh_update_autotools_config
    dh_autoreconf
    debian/rules override_dh_auto_configure
 make[1]: Entering directory '/build/reproducible-path/massxpert2-8.3.0'
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 mkdir -p debian/build
 mkdir -p debian/tmp
 cd debian/build && cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_USER_MANUAL=1 -DCMAKE_INSTALL_PREFIX=/usr ../..
@@ -2832,7 +2868,7 @@
 -- Detecting CXX compile features - done
 
 The devel directory where all the development projects
-should reside: /nonexistent/first-build/devel.
+should reside: /nonexistent/second-build/devel.
 
 
 Configuring build for project massXpert2
@@ -2874,20 +2910,20 @@
 -- Main CMAKE_BINARY_DIR: /build/reproducible-path/massxpert2-8.3.0/debian/build
 -- CMAKE_CXX_COMPILER: /usr/bin/c++
 
-** (process:1074491): WARNING **: 00:50:30.563: Unable to create profile directory (Permission denied) (13)
-** Message: 00:50:30.582: Cannot create profile directory /nonexistent/first-build/.config/inkscape.
-** Message: 00:50:30.583: Inkscape will run with default settings, and new settings will not be saved. 
+** (process:1072712): WARNING **: 09:53:22.668: Unable to create profile directory (Permission denied) (13)
+** Message: 09:53:22.677: Cannot create profile directory /nonexistent/second-build/.config/inkscape.
+** Message: 09:53:22.677: Inkscape will run with default settings, and new settings will not be saved. 
 Fontconfig error: No writable cache directories
 Fontconfig error: No writable cache directories
 Fontconfig error: No writable cache directories
 
-** (inkscape:1074491): WARNING **: 00:50:32.719: Could not create directory '/nonexistent/first-build/.config/inkscape'
+** (inkscape:1072712): WARNING **: 09:53:22.894: Could not create directory '/nonexistent/second-build/.config/inkscape'
 
-** (inkscape:1074491): WARNING **: 00:50:32.719: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log'
+** (inkscape:1072712): WARNING **: 09:53:22.894: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log'
 
-(inkscape:1074491): Gtk-CRITICAL **: 00:50:33.060: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied
+(inkscape:1072712): Gtk-CRITICAL **: 09:53:22.938: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied
 
-** (inkscape:1074491): WARNING **: 00:50:33.060: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function.
+** (inkscape:1072712): WARNING **: 09:53:22.938: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function.
 -- Adding subdirectory libmass for TARGET: massxpert2
 
 "Now configuring library mass"
@@ -2958,8 +2994,8 @@
 
 -- ~~~~~~~~~~~~~~~~~~~~~~~~ SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~
 
--- Configuring done (9.8s)
--- Generating done (0.2s)
+-- Configuring done (1.6s)
+-- Generating done (0.0s)
 -- Build files have been written to: /build/reproducible-path/massxpert2-8.3.0/debian/build
 # Ensure that the fop.xconf file is found in the DC* files
 # that are located in /build/reproducible-path/massxpert2-8.3.0/doc/user-manual
@@ -2968,7 +3004,7 @@
 make[1]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0'
    debian/rules override_dh_auto_build
 make[1]: Entering directory '/build/reproducible-path/massxpert2-8.3.0'
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 cd debian/build && make
 make[2]: Entering directory '/build/reproducible-path/massxpert2-8.3.0/debian/build'
 /usr/bin/cmake -S/build/reproducible-path/massxpert2-8.3.0 -B/build/reproducible-path/massxpert2-8.3.0/debian/build --check-build-system CMakeFiles/Makefile.cmake 0
@@ -5594,10 +5630,10 @@
 make[2]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0/debian/build'
 make[1]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0'
    dh_auto_test
-	rm -fr -- /tmp/dh-xdg-rundir-kDLu6Trv
+	rm -fr -- /tmp/dh-xdg-rundir-3MojSDGU
    create-stamp debian/debhelper-build-stamp
  fakeroot debian/rules binary
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 dh binary
    dh_testroot
    dh_prep
@@ -5608,7 +5644,7 @@
 	install -m0755 -d debian/massxpert2-data/usr/share/massxpert2/data
    debian/rules override_dh_auto_install
 make[1]: Entering directory '/build/reproducible-path/massxpert2-8.3.0'
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 cd debian/build && DESTDIR=../tmp make install
 make[2]: Entering directory '/build/reproducible-path/massxpert2-8.3.0/debian/build'
 /usr/bin/cmake -S/build/reproducible-path/massxpert2-8.3.0 -B/build/reproducible-path/massxpert2-8.3.0/debian/build --check-build-system CMakeFiles/Makefile.cmake 0
@@ -5715,447 +5751,447 @@
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/massxpert-polChemDefsCat
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/aspartate.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/pdb-code-conversion.dic
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/sulfbond.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cysteine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/leucine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/isoleucine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/phospho.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/alanine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/phenylalanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/oxidation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/lysine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/sulpho.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cfp-chromophore.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/diaminopimelic.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/threonine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/isotopic-data.dat
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glycine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cross_linker_dictionary
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/proline.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/tyrosine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cysteine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/valine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/default-modif-vignette.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/modification_dictionary
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/lysine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glycine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/diaminopimelic.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/protein-1-letter.xml
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/protonloss.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cfp-chromophore.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/tryptophan.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cursor.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/threonine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/serine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/acetyl.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/arginine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/default-cross-link-vignette.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glycylation.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/isotopic-data.dat
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/hydroxylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamate.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/default-cross-link-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/phospho.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/disulfidebond-cross-link.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/acetyl.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/sulfbond.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/monomer_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/hydroxylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/asparagine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/aspartate.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/chemPad.conf
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/tryptophan.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/pka_ph_pi.xml
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/leucine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/tyrosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/protonloss.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/serine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/protein-1-letter.xml
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/alanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/cursor.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/pdb-code-conversion.dic
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/methionine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/asparagine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/monomer_dictionary
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/valine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/histidine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/phenylalanine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/glutamate.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter/oxidation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/dthymine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ruracile.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-dcytosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/oxidation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/dcytosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/dguanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/thymine-dimer.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/rcytosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/isotopic-data.dat
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/diphospho.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/cross_linker_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/rguanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/dadenine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-rcytosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/default-modif-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-ruracile.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-dguanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/default-cross-link-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/phospho.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/nucac.xml
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/monomer_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-dadenine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/radenine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/chemPad.conf
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/methyl.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/cursor.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/biotlink.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-rguanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-dthymine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/nucac/ps-radenine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/allose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/gulose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/idose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/lyxose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/sorbose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/idose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylulose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/psicose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/gulose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/glucose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/isotopic-data.dat
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/threose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/fructose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/altrose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/lyxose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/cross_linker_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/threose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribose-text.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrulose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/psicose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/galactose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/threose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/arabinose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/glucose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/mannose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/fructose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/sorbose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/cross_linker_dictionary
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/altrose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/idose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/methyl.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/galactose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/psicose-text.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/default-modif-vignette.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/talose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/allose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/mannose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/template-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribulose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrulose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrulose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribulose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/talose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/cursor.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/lyxose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/tagatose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/fructose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/allose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/lyxose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/default-cross-link-vignette.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/isotopic-data.dat
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribulose.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylulose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/monomer_dictionary
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/tagatose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/glucose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/talose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/galactose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylulose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/talose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/altrose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/allose.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/gulose-text.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/chemPad.conf
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/mannose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrulose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/arabinose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/methyl.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/mannose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/erythrose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/fructose-text.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/arabinose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/monomer_dictionary
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/glucose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/psicose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/sorbose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/altrose.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/template-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribulose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/ribose-text.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/xylose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/tagatose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/cursor.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/saccharide.xml
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/saccharide/sorbose-text.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/cysteine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/leucine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/isoleucine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/phenylalanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/oxidation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/lysine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/sulpho.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/protein-1-letter-c-n-full-heavy.xml
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/cfp-chromophore.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/diaminopimelic.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/threonine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/isotopic-data.dat
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/glycine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/cross_linker_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/proline.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/valine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/default-modif-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/glutamine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/arginine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/glycylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/glutamate.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/default-cross-link-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/phospho.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/disulfidebond-cross-link.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/glutamylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/acetyl.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/sulfbond.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/monomer_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/hydroxylation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/asparagine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/aspartate.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/chemPad.conf
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/tryptophan.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/pka_ph_pi.xml
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/tyrosine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/protonloss.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/serine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/alanine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/cursor.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/pdb-code-conversion.dic
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/methionine.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/protein-1-letter-c-n-full-heavy/histidine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/guanine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/uracile.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/phospho.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/cytosine.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/cross_linker_dictionary
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/dna.xml
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/methyl.svg
--- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/default-modif-vignette.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/oxidation.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/thymine-dimer.svg
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/ps-guanine.svg
 -- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/modification_dictionary
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/isotopic-data.dat
+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/thymine.svg
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+-- Installing: ../tmp/usr/share/massxpert2/data/polChemDefs/dna/cross_linker_dictionary
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+-- Installing: ../tmp/usr/share/massxpert2/data/polSeqs/leu-enkephalin.mxp
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+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-cross-linkers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-manual-configuration-tab-isospec-dlg.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-monomer-manually-defined-modif.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-sacch-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-protein-monomer-acidobasic-data.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-protein-main-view.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-dna-fragmentation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers-mass-differences.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-client-server-config-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-pol-chem-def-wnd.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-select-sample-sequence.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-cross-linkers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-bad-char.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-filtering-oligomer-data.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-empty-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-select-pol-chem-def.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-cleavages.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-choose-pol-chem-def.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-generic-method.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-filtering-oligomer-data.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-select-pol-chem-def.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-select-sample-sequence.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-simplest-case.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-bad-char.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-peak-shaper-results-tab-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-pol-chem-def-wnd.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation-cross-linked-oligomer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-peak-centroids-result-tab.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-nucleic-acids-fragment-calculation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-peptide-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-output-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-protein-monomer-acidobasic-data.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-sacch-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-select-pol-chem-def.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-simplest-case.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-modifications.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-find-sequence-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-compositions.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer-manually-defined-modif.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mzlab-wnd.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-chempad.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-empty-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-nucac-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-recorder.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-mass-search.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-mz-ratio-calculator.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-manual-configuration-tab-isospec-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-pol-chem-defs-directory-protein-and-saccharide.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-shaper-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-polymer.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-monomer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-dna-fragmentation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-peak-centroids-result-tab.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-cleavages.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-find-sequence-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-select-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-sacch-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-generic-method.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-fragmentation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-3-letter-code-whole-process.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-completed-manual-configuration-tab-isospec-dlg.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-only-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-nucac-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-sacch-bond-formation.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-shaper-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-protein-main-view.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-nucac-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-cross-linkers.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-completed-manual-configuration-tab-isospec-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-3-letter-code-whole-process.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-only-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-compositions.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-cross-link-monomers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-isotopes.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-fragmentation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-output-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-purified.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-client-server-config-dlg.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-net-charge-pka-ph-pi.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-empty-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-cleavage.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-nucac-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-utilities-menu.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers-mass-differences.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-cleavages.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-sacch-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-pol-chem-defs-directory-protein-and-saccharide.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-protein-fragment-calculation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mzlab-wnd.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-choose-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-peptide-bond-formation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-isotopes.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-completed-manual-configuration-tab-isospec-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-output-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer-manually-defined-modif.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-peptide-bond-formation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-nucac-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-mz-ratio-calculator.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation-cross-linked-oligomer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-pol-chem-def-wnd.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-filtering-oligomer-data.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-pol-chem-defs-directory-protein-and-saccharide.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-3-letter-code-whole-process.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-mass-search.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-mz-ratio-calculator.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-output-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-input-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-cleavage.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-compositions.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-nucac-bond-formation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-find-sequence-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-nucleic-acids-fragment-calculation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-protein-monomer-acidobasic-data.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-peptide-bond-formation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-chempad.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-modifications.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-find-sequence-dlg.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-feedback-addresses.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-sacch-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-select-pol-chem-def.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-first.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-only-filled-input-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-simplest-case.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-select-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-filled-input-mz-list.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-feedback-addresses.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-nucleic-acids-fragment-calculation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-peak-centroids-result-tab.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-recorder.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/flying-frog.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-cleavage.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-utilities-menu.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-net-charge-pka-ph-pi.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-protein-monomer-acidobasic-data.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-recorder.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-3-letter-code-whole-process.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-purified.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mzlab-wnd.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-cleavages.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-nucac-polymer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-completed-manual-configuration-tab-isospec-dlg.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-protein-main-view.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-cleavage.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-cross-linkers.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-peak-centroids-result-tab.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-cleavages.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-utilities-menu.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-pol-chem-def-wnd.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-choose-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-client-server-config-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-empty-input-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-mz-ratio-calculator.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-isotopes.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/flying-frog.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-mass-search.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers-mass-differences.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-cleavages.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-peak-shaper-results-tab-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-select-sample-sequence.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-compositions.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-manual-configuration-tab-isospec-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-nucleic-acids-fragment-calculation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-manual-configuration-tab-isospec-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-feedback-addresses.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-shaper-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-bad-char.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-cleavages.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-mzlab-wnd.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-protein-fragment-calculation.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-cross-link-monomers.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-utilities-menu.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-generic-method.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-filtering-oligomer-data.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertdef-modifications.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers-mass-differences.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-client-server-config-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-massxpert-protein-fragment-calculation.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-dna-fragmentation.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-massxpert-peak-shaper-results-tab-dlg.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-prot-fragmentation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-select-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-prot-fragmentation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-select-pol-chem-def.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-recorder.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-input-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-bad-char.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertminer-filled-input-mz-list.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-feedback-addresses.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertdef-modifications.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-xpertedit-select-sample-sequence.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-nucac-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-sacch-bond-formation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-pol-chem-defs-directory-protein-and-saccharide.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-polymer.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/print-sacch-bond-formation.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-chempad.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_data-customizations.html
--- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_xpertedit-module.html
--- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_utilities.html
--- Installing: ../tmp/usr/share/doc/massxpert2/html/gpl.html
--- Installing: ../tmp/usr/share/doc/massxpert2/html/index.html
--- Installing: ../tmp/usr/share/doc/massxpert2/html/co01.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation-cross-linked-oligomer.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/images/web-xpertedit-choose-pol-chem-def.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_xpertdef-module.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/co01.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_basics_polchem.html
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-brown-on-brown.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-green.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/flying-frog-logo.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-orange.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-gray.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/tick.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/green-frog-logo.svg
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/draft.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/arrow.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icons-old.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-warning.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icons.svg
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-grayongreen.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-caution.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-tip.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-orange.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-note.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/logo.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-darkgray.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/green-frog-logo.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-grayongreen.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-gray.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/flying-frog-logo.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/arrow.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icons.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-red.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-warning.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/green-frog-logo.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/tick.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-green.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-important.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/logo.png
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-darkgray.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-tip.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icon-caution.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/draft.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/logo.svg
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/dots-brown-on-brown.png
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/images/icons-old.png
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/fonts.css
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/highlight.css
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/style.css
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/fonts-onlylocal.css
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/fonts.css
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/css/style.css
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/js
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/static/js/highlight.min.js
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/js/script.js
 -- Installing: ../tmp/usr/share/doc/massxpert2/html/static/js/jquery-1.10.2.min.js
--- Installing: ../tmp/usr/share/doc/massxpert2/html/static/js/highlight.min.js
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_data-customizations.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_xpertedit-module.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/index.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_xpertcalc-module.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/chap_utilities.html
+-- Installing: ../tmp/usr/share/doc/massxpert2/html/gpl.html
 make[2]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0/debian/build'
 dh_install
 	install -m0755 -d debian/massxpert2//usr/bin
@@ -6213,16 +6249,16 @@
 	install -m0755 -d debian/massxpert2-doc/usr/share/doc-base/
 	install -p -m0644 debian/massxpert2-doc.doc-base debian/massxpert2-doc/usr/share/doc-base/massxpert2-doc.massxpert2-user-manual
    dh_installchangelogs
-	install -m0755 -d debian/massxpert-doc/usr/share/doc/massxpert-doc
-	install -p -m0644 debian/.debhelper/generated/massxpert-doc/dh_installchangelogs.dch.trimmed debian/massxpert-doc/usr/share/doc/massxpert-doc/changelog.Debian
 	install -m0755 -d debian/massxpert/usr/share/doc/massxpert
 	install -p -m0644 debian/.debhelper/generated/massxpert/dh_installchangelogs.dch.trimmed debian/massxpert/usr/share/doc/massxpert/changelog.Debian
-	install -m0755 -d debian/massxpert2-doc/usr/share/doc/massxpert2-doc
-	install -p -m0644 debian/.debhelper/generated/massxpert2-doc/dh_installchangelogs.dch.trimmed debian/massxpert2-doc/usr/share/doc/massxpert2-doc/changelog.Debian
-	install -m0755 -d debian/massxpert2-data/usr/share/doc/massxpert2-data
-	install -p -m0644 debian/.debhelper/generated/massxpert2-data/dh_installchangelogs.dch.trimmed debian/massxpert2-data/usr/share/doc/massxpert2-data/changelog.Debian
 	install -m0755 -d debian/massxpert2/usr/share/doc/massxpert2
 	install -p -m0644 debian/.debhelper/generated/massxpert2/dh_installchangelogs.dch.trimmed debian/massxpert2/usr/share/doc/massxpert2/changelog.Debian
+	install -m0755 -d debian/massxpert2-data/usr/share/doc/massxpert2-data
+	install -p -m0644 debian/.debhelper/generated/massxpert2-data/dh_installchangelogs.dch.trimmed debian/massxpert2-data/usr/share/doc/massxpert2-data/changelog.Debian
+	install -m0755 -d debian/massxpert2-doc/usr/share/doc/massxpert2-doc
+	install -p -m0644 debian/.debhelper/generated/massxpert2-doc/dh_installchangelogs.dch.trimmed debian/massxpert2-doc/usr/share/doc/massxpert2-doc/changelog.Debian
+	install -m0755 -d debian/massxpert-doc/usr/share/doc/massxpert-doc
+	install -p -m0644 debian/.debhelper/generated/massxpert-doc/dh_installchangelogs.dch.trimmed debian/massxpert-doc/usr/share/doc/massxpert-doc/changelog.Debian
    dh_installman
 	install -m0755 -d debian/massxpert2/usr/share/man/man1/
 	install -p -m0644 debian/tmp/usr/share/man/man1/massxpert2.1 debian/massxpert2/usr/share/man/man1/massxpert2.1
@@ -6240,164 +6276,164 @@
 	ln -s ../../../../../javascript/jquery/jquery.min.js debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/js/jquery-1.10.2.min.js
    dh_strip_nondeterminism
 	Using 1700580228 as canonical time
-	Normalizing debian/massxpert2/usr/share/icons/hicolor/32x32/apps/massxpert2.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2/usr/share/icons/hicolor/64x64/apps/massxpert2.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2/usr/share/icons/hicolor/48x48/apps/massxpert2.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2/usr/share/icons/hicolor/64x64/apps/massxpert2.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2/usr/share/icons/hicolor/16x16/apps/massxpert2.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2/usr/share/icons/hicolor/32x32/apps/massxpert2.png using File::StripNondeterminism::handlers::png
 	Using 1700580228 as canonical time
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/green-frog-logo.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/tick.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-important.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/logo.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-darkgray.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-isotopes.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-client-server-config-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-select-sample-sequence.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icons-old.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-monomer-manually-defined-modif.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-sacch-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-protein-main-view.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-dna-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-peak-centroids-result-tab.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer-manually-defined-modif.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-peptide-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-nucac-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-bad-char.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-filtering-oligomer-data.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-cleavages.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-filtering-oligomer-data.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-bad-char.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-peak-shaper-results-tab-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-prot-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-select-sample-sequence.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-compositions.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-nucleic-acids-fragment-calculation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icons-old.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-grayongreen.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-caution.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-pol-chem-defs-directory-protein-and-saccharide.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-shaper-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-peptide-bond-formation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-prot-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-sacch-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-dna-fragmentation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-peak-shaper-results-tab-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation-cross-linked-oligomer.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-tip.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-note.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icons.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-red.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-warning.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-brown-on-brown.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-green.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/flying-frog-logo.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-orange.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-gray.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-caution.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/draft.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/arrow.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-nucleic-acids-fragment-calculation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-monomer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-dna-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-peak-centroids-result-tab.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-cleavages.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-find-sequence-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-prot-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-brown-on-brown.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-note.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/logo.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-darkgray.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/green-frog-logo.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-modifications.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-find-sequence-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-compositions.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer-manually-defined-modif.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-completed-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cross-link-monomers.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-net-charge-pka-ph-pi.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-protein-fragment-calculation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-peptide-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-isotopes.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-completed-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-prot-cleavage.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-cross-linkers.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-utilities-menu.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-pol-chem-def-wnd.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-sacch-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-only-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-nucac-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-sacch-bond-formation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-fragmentation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-feedback-addresses.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-nucac-bond-formation.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-shaper-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-protein-main-view.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-only-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-compositions.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-nucac-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-filtering-oligomer-data.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-modifications.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-completed-manual-configuration-tab-isospec-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-protein-main-view.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-peak-centroids-result-tab.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-choose-pol-chem-def.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/tick.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-warning.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-orange.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-client-server-config-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-protein-fragment-calculation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-peak-shaper-results-tab-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-polymer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-net-charge-pka-ph-pi.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-prot-cleavage.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cross-link-monomers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-isotopes.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-prot-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-net-charge-pka-ph-pi.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mzlab-wnd.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-protein-main-view.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-feedback-addresses.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-isotopic-cluster-shaper-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-specific-frag-rules-method.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-bad-char.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-protein-fragment-calculation.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-cross-link-monomers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icons.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-red.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-green.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/icon-important.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-nucac-bond-formation.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-utilities-menu.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-base-loss-generic-method.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-client-server-config-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-empty-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-cleavages.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-grayongreen.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/dots-gray.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/flying-frog-logo.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/static/images/arrow.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-mass-search.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-mz-ratio-calculator.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-isotopes.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-nucleic-acids-fragment-calculation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-peak-centroids-result-tab.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/flying-frog.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-mass-search.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers-mass-differences.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-modifications.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-select-sample-sequence.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-nucac-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-sacch-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-pol-chem-defs-directory-protein-and-saccharide.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-sacch-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-modify-monomer.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-prot-fragmentation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-recorder.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-bad-char.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-feedback-addresses.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-prot-cleavage.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-compositions.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-nucac-bond-formation.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-find-sequence-dlg.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-sequence-editor-sequence-import-errors-first.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-only-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-fragmentation-dna-simplest-case.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-select-pol-chem-def.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-filtering-oligomer-data.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-modify-monomer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-pol-chem-defs-directory-protein-and-saccharide.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-mass-search.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-massxpert-nucleic-acids-fragment-calculation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-protein-monomer-acidobasic-data.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-peptide-bond-formation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-monomers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-feedback-addresses.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertdef-monomers.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-sacch-polymer.png using File::StripNondeterminism::handlers::png
 	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-mz-ratio-calculator.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-prot-polymer.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertminer-mz-z-filled-output-mz-list.png using File::StripNondeterminism::handlers::png
-	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertminer-mz-z-filled-input-mz-list.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-isotopic-cluster-generator-wnd-isospec-std-tab.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-3-letter-code-whole-process.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-cfp-chromophore-disulfide-bond-account-cross-links.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-sacch-bond-formation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-pol-chem-defs-directory-protein-and-saccharide.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-protein-fragment-calculation.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertcalc-protein-1-letter.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertcalc-protein-1-letter-chempad.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-sequence-editor-sequence-import-errors-purified.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-modifications.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-xpertedit-find-sequence-dlg.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-prot-cleavage.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/print-massxpert-utilities-menu.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertedit-net-charge-pka-ph-pi.png using File::StripNondeterminism::handlers::png
+	Normalizing debian/massxpert2-doc/usr/share/doc/massxpert2/html/images/web-xpertdef-cleavages.png using File::StripNondeterminism::handlers::png
 	rm -f debian/massxpert-doc.debhelper.log debian/massxpert.debhelper.log debian/massxpert2-data.debhelper.log debian/massxpert2-doc.debhelper.log debian/massxpert2.debhelper.log
    debian/rules override_dh_compress
 make[1]: Entering directory '/build/reproducible-path/massxpert2-8.3.0'
-PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+PATH: /build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/build/reproducible-path/massxpert2-8.3.0/doc/user-manual/scripts:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
 dh_compress -X.pdf
 	cd debian/massxpert
 	cd debian/massxpert-doc
@@ -6405,48 +6441,48 @@
 	cd debian/massxpert2-data
 	cd debian/massxpert2-doc
 	chmod a-x usr/share/doc/massxpert-doc/changelog.Debian
-	chmod a-x usr/share/doc/massxpert2-data/changelog.Debian
-	gzip -9nf usr/share/doc/massxpert-doc/changelog.Debian
-	gzip -9nf usr/share/doc/massxpert2-data/changelog.Debian
 	chmod a-x usr/share/doc/massxpert/changelog.Debian
+	chmod a-x usr/share/doc/massxpert2-data/changelog.Debian
 	chmod a-x usr/share/doc/massxpert2/changelog.Debian usr/share/man/man1/massxpert2.1
 	gzip -9nf usr/share/doc/massxpert/changelog.Debian
-	cd '/build/reproducible-path/massxpert2-8.3.0'
+	gzip -9nf usr/share/doc/massxpert-doc/changelog.Debian
+	gzip -9nf usr/share/doc/massxpert2-data/changelog.Debian
 	gzip -9nf usr/share/doc/massxpert2/changelog.Debian usr/share/man/man1/massxpert2.1
 	cd '/build/reproducible-path/massxpert2-8.3.0'
 	cd '/build/reproducible-path/massxpert2-8.3.0'
 	cd '/build/reproducible-path/massxpert2-8.3.0'
+	cd '/build/reproducible-path/massxpert2-8.3.0'
 	chmod a-x usr/share/doc/massxpert2-doc/changelog.Debian
 	gzip -9nf usr/share/doc/massxpert2-doc/changelog.Debian
 	cd '/build/reproducible-path/massxpert2-8.3.0'
 make[1]: Leaving directory '/build/reproducible-path/massxpert2-8.3.0'
    dh_fixperms
-	find debian/massxpert-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/massxpert -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
+	find debian/massxpert-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/massxpert2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/massxpert2-data -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/massxpert2-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/massxpert ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
-	find debian/massxpert2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
-	find debian/massxpert2-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
-	find debian/massxpert2-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/massxpert-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
-	find debian/massxpert2-data/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert2-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/massxpert2-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert2-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/massxpert2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/massxpert/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/massxpert-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/massxpert2-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
+	find debian/massxpert/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/massxpert-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/massxpert2/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/massxpert/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
-	find debian/massxpert2-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
-	find debian/massxpert2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
+	find debian/massxpert2-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
 	find debian/massxpert -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/massxpert-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/massxpert2-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
+	find debian/massxpert2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/massxpert2/usr/share/man debian/massxpert2/usr/share/applications -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/massxpert2-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert2-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/massxpert2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+	find debian/massxpert2-data/usr/share/doc -type f -a -true -a ! -regex 'debian/massxpert2-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/massxpert2/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
+	find debian/massxpert2-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
 	find debian/massxpert2-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
+	find debian/massxpert2-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
 	find debian/massxpert2-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
    dh_missing
    dh_dwz -a
@@ -6473,6 +6509,10 @@
 	install -m0755 -d debian/massxpert2-data/DEBIAN
 	install -m0755 -d debian/massxpert2-doc/DEBIAN
    dh_gencontrol
+	install -m0755 -d debian/massxpert-doc/DEBIAN
+	echo misc:Depends= >> debian/massxpert-doc.substvars
+	echo misc:Pre-Depends= >> debian/massxpert-doc.substvars
+	dpkg-gencontrol -pmassxpert-doc -ldebian/changelog -Tdebian/massxpert-doc.substvars -cdebian/control -Pdebian/massxpert-doc
 	install -m0755 -d debian/massxpert/DEBIAN
 	echo misc:Depends= >> debian/massxpert.substvars
 	echo misc:Pre-Depends= >> debian/massxpert.substvars
@@ -6481,10 +6521,6 @@
 	echo misc:Depends= >> debian/massxpert2-data.substvars
 	echo misc:Pre-Depends= >> debian/massxpert2-data.substvars
 	dpkg-gencontrol -pmassxpert2-data -ldebian/changelog -Tdebian/massxpert2-data.substvars -cdebian/control -Pdebian/massxpert2-data
-	install -m0755 -d debian/massxpert-doc/DEBIAN
-	echo misc:Depends= >> debian/massxpert-doc.substvars
-	echo misc:Pre-Depends= >> debian/massxpert-doc.substvars
-	dpkg-gencontrol -pmassxpert-doc -ldebian/changelog -Tdebian/massxpert-doc.substvars -cdebian/control -Pdebian/massxpert-doc
 	install -m0755 -d debian/massxpert2/DEBIAN
 	echo misc:Depends= >> debian/massxpert2.substvars
 	echo misc:Pre-Depends= >> debian/massxpert2.substvars
@@ -6501,37 +6537,37 @@
 	chmod 0644 -- debian/.debhelper/massxpert2/dbgsym-root/DEBIAN/control
 	chown 0:0 -- debian/.debhelper/massxpert2/dbgsym-root/DEBIAN/control
 	dpkg-gencontrol -pmassxpert2 -ldebian/changelog -Tdebian/massxpert2.substvars -cdebian/control -Pdebian/massxpert2
-	chmod 0644 -- debian/massxpert2-data/DEBIAN/control
-	chown 0:0 -- debian/massxpert2-data/DEBIAN/control
 	chmod 0644 -- debian/massxpert2-doc/DEBIAN/control
 	chown 0:0 -- debian/massxpert2-doc/DEBIAN/control
+	chmod 0644 -- debian/massxpert2-data/DEBIAN/control
+	chown 0:0 -- debian/massxpert2-data/DEBIAN/control
 	chmod 0644 -- debian/massxpert2/DEBIAN/control
 	chown 0:0 -- debian/massxpert2/DEBIAN/control
    dh_md5sums
-	install -m0755 -d debian/massxpert2-data/DEBIAN
-	install -m0755 -d debian/massxpert2/DEBIAN
 	install -m0755 -d debian/massxpert/DEBIAN
 	install -m0755 -d debian/massxpert-doc/DEBIAN
+	install -m0755 -d debian/massxpert2/DEBIAN
+	install -m0755 -d debian/massxpert2-data/DEBIAN
 	install -m0755 -d debian/massxpert2-doc/DEBIAN
-	cd debian/massxpert2-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	cd debian/massxpert >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	cd debian/massxpert-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
-	cd debian/massxpert2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	cd debian/massxpert2-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+	cd debian/massxpert2 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+	cd debian/massxpert2-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
 	chmod 0644 -- debian/massxpert/DEBIAN/md5sums
 	chown 0:0 -- debian/massxpert/DEBIAN/md5sums
 	chmod 0644 -- debian/massxpert-doc/DEBIAN/md5sums
 	chown 0:0 -- debian/massxpert-doc/DEBIAN/md5sums
-	chmod 0644 -- debian/massxpert2-data/DEBIAN/md5sums
-	chown 0:0 -- debian/massxpert2-data/DEBIAN/md5sums
 	chmod 0644 -- debian/massxpert2/DEBIAN/md5sums
 	chown 0:0 -- debian/massxpert2/DEBIAN/md5sums
 	install -m0755 -d debian/.debhelper/massxpert2/dbgsym-root/DEBIAN
 	cd debian/.debhelper/massxpert2/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
-	chmod 0644 -- debian/massxpert2-doc/DEBIAN/md5sums
-	chown 0:0 -- debian/massxpert2-doc/DEBIAN/md5sums
+	chmod 0644 -- debian/massxpert2-data/DEBIAN/md5sums
+	chown 0:0 -- debian/massxpert2-data/DEBIAN/md5sums
 	chmod 0644 -- debian/.debhelper/massxpert2/dbgsym-root/DEBIAN/md5sums
 	chown 0:0 -- debian/.debhelper/massxpert2/dbgsym-root/DEBIAN/md5sums
+	chmod 0644 -- debian/massxpert2-doc/DEBIAN/md5sums
+	chown 0:0 -- debian/massxpert2-doc/DEBIAN/md5sums
    dh_builddeb
 	dpkg-deb --build debian/massxpert ..
 	dpkg-deb --build debian/massxpert-doc ..
@@ -6539,8 +6575,8 @@
 	dpkg-deb --root-owner-group --build debian/.debhelper/massxpert2/dbgsym-root ..
 	dpkg-deb --build debian/massxpert2-data ..
 	dpkg-deb --build debian/massxpert2-doc ..
-dpkg-deb: building package 'massxpert' in '../massxpert_8.3.0-1_all.deb'.
 dpkg-deb: building package 'massxpert-doc' in '../massxpert-doc_8.3.0-1_all.deb'.
+dpkg-deb: building package 'massxpert' in '../massxpert_8.3.0-1_all.deb'.
 dpkg-deb: building package 'massxpert2' in '../massxpert2_8.3.0-1_amd64.deb'.
 dpkg-deb: building package 'massxpert2-dbgsym' in '../massxpert2-dbgsym_8.3.0-1_amd64.deb'.
 dpkg-deb: building package 'massxpert2-data' in '../massxpert2-data_8.3.0-1_all.deb'.
@@ -6552,12 +6588,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/1032906/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/933438 and its subdirectories
-I: Current time: Sun Apr 21 01:25:48 -12 2024
-I: pbuilder-time-stamp: 1713705948
+I: removing directory /srv/workspace/pbuilder/1032906 and its subdirectories
+I: Current time: Sun May 25 10:09:46 +14 2025
+I: pbuilder-time-stamp: 1748117386