Diff of the two buildlogs: -- --- b1/build.log 2024-05-09 08:19:36.134588464 +0000 +++ b2/build.log 2024-05-09 08:20:26.704436504 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 11 02:41:41 -12 2025 -I: pbuilder-time-stamp: 1749652901 +I: Current time: Thu May 9 22:19:39 +14 2024 +I: pbuilder-time-stamp: 1715242779 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying makefile.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2431878/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 9 08:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='111252898f5e4019858ddd51959a0843' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2431878' - PS1='# ' - PS2='> ' + INVOCATION_ID=e6fee516a8264fb8947c9907a72a9402 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1698377 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ek1khJSq/pbuilderrc_Ms9r --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ek1khJSq/b1 --logfile b1/build.log muscle3_3.8.1551-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Ek1khJSq/pbuilderrc_IJP8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Ek1khJSq/b2 --logfile b2/build.log muscle3_3.8.1551-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 10 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2431878/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 8 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +171,7 @@ Get: 28 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] -Fetched 19.0 MB in 0s (78.2 MB/s) +Fetched 19.0 MB in 0s (93.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -274,7 +306,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/muscle3-3.8.1551/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../muscle3_3.8.1551-3_source.changes +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/muscle3-3.8.1551/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../muscle3_3.8.1551-3_source.changes dpkg-buildpackage: info: source package muscle3 dpkg-buildpackage: info: source version 3.8.1551-3 dpkg-buildpackage: info: source distribution unstable @@ -306,7 +342,6 @@ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 blosum62.cpp -o blosum62.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 blosumla.cpp -o blosumla.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 clust.cpp -o clust.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 cluster.cpp -o cluster.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -319,9 +354,10 @@ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 clwwt.cpp -o clwwt.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 color.cpp -o color.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 color.cpp -o color.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 cons.cpp -o cons.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -330,95 +366,95 @@ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 diffobjscore.cpp -o diffobjscore.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 diffpaths.cpp -o diffpaths.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 difftrees.cpp -o difftrees.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 difftreese.cpp -o difftreese.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 distcalc.cpp -o distcalc.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 distfunc.cpp -o distfunc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 distfunc.cpp -o distfunc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 distpwkimura.cpp -o distpwkimura.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 domuscle.cpp -o domuscle.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 dosp.cpp -o dosp.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 dosp.cpp -o dosp.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 dpreglist.cpp -o dpreglist.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 drawtree.cpp -o drawtree.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 edgelist.cpp -o edgelist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 enumopts.cpp -o enumopts.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 enumtostr.cpp -o enumtostr.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 estring.cpp -o estring.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fasta.cpp -o fasta.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fasta2.cpp -o fasta2.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastclust.cpp -o fastclust.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastclust.cpp -o fastclust.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdist.cpp -o fastdist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistjones.cpp -o fastdistjones.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistkbit.cpp -o fastdistkbit.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistkmer.cpp -o fastdistkmer.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistmafft.cpp -o fastdistmafft.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastdistnuc.cpp -o fastdistnuc.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 fastscorepath2.cpp -o fastscorepath2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 finddiags.cpp -o finddiags.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 finddiagsn.cpp -o finddiagsn.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalign.cpp -o glbalign.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalign352.cpp -o glbalign352.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbaligndiag.cpp -o glbaligndiag.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignle.cpp -o glbalignle.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignsimple.cpp -o glbalignsimple.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignsimple.cpp -o glbalignsimple.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignsp.cpp -o glbalignsp.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignspn.cpp -o glbalignspn.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalignss.cpp -o glbalignss.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalndimer.cpp -o glbalndimer.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 glbalndimer.cpp -o glbalndimer.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globals.cpp -o globals.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globalslinux.cpp -o globalslinux.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globalsosx.cpp -o globalsosx.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globalsother.cpp -o globalsother.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globalsother.cpp -o globalsother.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 globalswin32.cpp -o globalswin32.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 gonnet.cpp -o gonnet.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 gonnet.cpp -o gonnet.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 henikoffweight.cpp -o henikoffweight.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 henikoffweightpb.cpp -o henikoffweightpb.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 html.cpp -o html.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 henikoffweightpb.cpp -o henikoffweightpb.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 html.cpp -o html.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 hydro.cpp -o hydro.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 intmath.cpp -o intmath.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 local.cpp -o local.o @@ -426,161 +462,165 @@ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 main.cpp -o main.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 makerootmsa.cpp -o makerootmsa.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 makerootmsab.cpp -o makerootmsab.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 makerootmsab.cpp -o makerootmsab.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 maketree.cpp -o maketree.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 mhack.cpp -o mhack.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 mpam200.cpp -o mpam200.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msa.cpp -o msa.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msa2.cpp -o msa2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 mhack.cpp -o mhack.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 mpam200.cpp -o mpam200.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msa.cpp -o msa.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msa2.cpp -o msa2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msadistkimura.cpp -o msadistkimura.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 msf.cpp -o msf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 muscle.cpp -o muscle.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 muscleout.cpp -o muscleout.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nucmx.cpp -o nucmx.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasimple.cpp -o nwdasimple.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasimple2.cpp -o nwdasimple2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasimple2.cpp -o nwdasimple2.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwdasmall.cpp -o nwdasmall.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwrec.cpp -o nwrec.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 nwsmall.cpp -o nwsmall.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 objscore.cpp -o objscore.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 objscore.cpp -o objscore.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 objscore2.cpp -o objscore2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 objscoreda.cpp -o objscoreda.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 onexception.cpp -o onexception.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 onexception.cpp -o onexception.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 options.cpp -o options.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 outweights.cpp -o outweights.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 pam200mafft.cpp -o pam200mafft.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 params.cpp -o params.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phy.cpp -o phy.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phy2.cpp -o phy2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phy2.cpp -o phy2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phy3.cpp -o phy3.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phy4.cpp -o phy4.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phyfromclust.cpp -o phyfromclust.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phyfromfile.cpp -o phyfromfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 physeq.cpp -o physeq.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 phytofile.cpp -o phytofile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 posgap.cpp -o posgap.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 ppscore.cpp -o ppscore.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 profdb.cpp -o profdb.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 profile.cpp -o profile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 profilefrommsa.cpp -o profilefrommsa.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 progalign.cpp -o progalign.o +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 progress.cpp -o progress.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 progress.cpp -o progress.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 progressivealign.cpp -o progressivealign.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 pwpath.cpp -o pwpath.o +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 progressivealign.cpp -o progressivealign.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 pwpath.cpp -o pwpath.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 readmx.cpp -o readmx.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffs.cpp -o realigndiffs.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 realigndiffse.cpp -o realigndiffse.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refine.cpp -o refine.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinehoriz.cpp -o refinehoriz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinesubfams.cpp -o refinesubfams.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinetree.cpp -o refinetree.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinetreee.cpp -o refinetreee.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinevert.cpp -o refinevert.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinevert.cpp -o refinevert.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 refinew.cpp -o refinew.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 savebest.cpp -o savebest.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 scoredist.cpp -o scoredist.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 scoregaps.cpp -o scoregaps.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 scoregaps.cpp -o scoregaps.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 scorehistory.cpp -o scorehistory.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 scorepp.cpp -o scorepp.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 seq.cpp -o seq.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 seqvect.cpp -o seqvect.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 setblosumweights.cpp -o setblosumweights.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 setblosumweights.cpp -o setblosumweights.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 setgscweights.cpp -o setgscweights.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 setnewhandler.cpp -o setnewhandler.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 sptest.cpp -o sptest.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 stabilize.cpp -o stabilize.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 subfam.cpp -o subfam.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 subfams.cpp -o subfams.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 sw.cpp -o sw.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 termgaps.cpp -o termgaps.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 textfile.cpp -o textfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 traceback.cpp -o traceback.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 tracebacksw.cpp -o tracebacksw.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 typetostr.cpp -o typetostr.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 upgma2.cpp -o upgma2.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ typetostr.cpp: In function 'const char* SecsToStr(long unsigned int)': typetostr.cpp:13:28: warning: ':' directive writing 1 byte into a region of size between 0 and 14 [-Wformat-overflow=] 13 | sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); @@ -592,10 +632,6 @@ typetostr.cpp:13:16: note: 'sprintf' output between 9 and 23 bytes into a destination of size 16 13 | sprintf(Str, "%02ld:%02ld:%02ld", hh, mm, ss); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o -g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 vtml2.cpp -o vtml2.o g++ -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/muscle3-3.8.1551=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -funroll-loops -Winline -DNDEBUG=1 writescorefile.cpp -o writescorefile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -639,12 +675,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1698377/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2431878 and its subdirectories -I: Current time: Wed Jun 11 02:42:35 -12 2025 -I: pbuilder-time-stamp: 1749652955 +I: removing directory /srv/workspace/pbuilder/1698377 and its subdirectories +I: Current time: Thu May 9 22:20:25 +14 2024 +I: pbuilder-time-stamp: 1715242825