Diff of the two buildlogs: -- --- b1/build.log 2024-05-01 06:34:15.899001552 +0000 +++ b2/build.log 2024-05-01 06:48:34.662414359 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 3 00:51:39 -12 2025 -I: pbuilder-time-stamp: 1748955099 +I: Current time: Wed May 1 20:34:25 +14 2024 +I: pbuilder-time-stamp: 1714545265 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying remove-inchi.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1349328/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 1 06:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5161e66e9d744189842b5383a6d6c7bc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1349328' - PS1='# ' - PS2='> ' + INVOCATION_ID=cf164cb47bb2435c941f1aea701b86bf + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3058615 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VusKXT9T/pbuilderrc_rUex --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VusKXT9T/b1 --logfile b1/build.log oscar4_5.2.0+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VusKXT9T/pbuilderrc_w9QP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VusKXT9T/b2 --logfile b2/build.log oscar4_5.2.0+dfsg-2.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 31 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1349328/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 27 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -434,7 +466,7 @@ Get: 289 http://deb.debian.org/debian unstable/main amd64 maven all 3.8.7-2 [19.3 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 maven-debian-helper all 2.6.4 [108 kB] -Fetched 349 MB in 8s (44.4 MB/s) +Fetched 349 MB in 11s (32.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sgml-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19694 files and directories currently installed.) @@ -1807,7 +1839,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-2_source.changes dpkg-buildpackage: info: source package oscar4 dpkg-buildpackage: info: source version 5.2.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -2181,24 +2217,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.236 s] -[INFO] oscar4-core ........................................ SUCCESS [ 1.677 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.664 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 0.979 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.208 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.646 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.508 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.156 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.127 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.149 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.064 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.048 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.136 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.660 s] +[INFO] oscar4-core ........................................ SUCCESS [ 7.227 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 2.167 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 2.028 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.364 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 1.795 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 1.303 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.333 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.334 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.387 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.182 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.116 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.367 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 5.712 s -[INFO] Finished at: 2025-06-03T12:53:20Z +[INFO] Total time: 17.698 s +[INFO] Finished at: 2024-05-01T06:41:17Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/oscar4-5.2.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian/maven-repo --batch-mode test @@ -2251,37 +2287,37 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.128 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.052 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.291 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.123 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.05 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest [INFO] [INFO] Results: [INFO] @@ -2311,27 +2347,27 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.231 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.456 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.994 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest [INFO] [INFO] Results: [INFO] @@ -2362,16 +2398,16 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.523 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.638 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.265 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.625 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.704 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 30.947 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest [INFO] [INFO] Results: [INFO] @@ -2405,15 +2441,15 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.654 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest +[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 4.068 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.125 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest [INFO] [INFO] Results: [INFO] @@ -2443,29 +2479,29 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 10.112 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.14 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest +[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 17.641 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.283 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.13 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 3.731 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.743 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 29.523 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2495,23 +2531,23 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 25.101 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.477 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.744 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.369 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.772 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.724 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 41.071 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.038 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.973 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.573 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest [INFO] [INFO] Results: [INFO] @@ -2545,7 +2581,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 47.744 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 88.296 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2576,12 +2612,12 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.674 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.069 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.347 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.459 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest [INFO] [INFO] Results: [INFO] @@ -2615,7 +2651,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 39.098 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 72.344 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest [INFO] [INFO] Results: [INFO] @@ -2646,7 +2682,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.059 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.131 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest [INFO] [INFO] Results: [INFO] @@ -2697,19 +2733,19 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.952 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.525 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest [INFO] [INFO] Results: [INFO] @@ -2718,24 +2754,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.212 s] -[INFO] oscar4-core ........................................ SUCCESS [ 10.328 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 10.040 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 10.045 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 10.031 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 20.030 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 40.034 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 50.027 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 10.030 s] -[INFO] oscar4-api ......................................... SUCCESS [ 40.031 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 10.020 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.012 s] -[INFO] oscar4-data ........................................ SUCCESS [ 10.023 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.661 s] +[INFO] oscar4-core ........................................ SUCCESS [ 10.893 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 10.443 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 40.143 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 10.171 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [01:10 min] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [01:00 min] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [01:30 min] +[INFO] oscar4-opsin ....................................... SUCCESS [ 10.452 s] +[INFO] oscar4-api ......................................... SUCCESS [01:20 min] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 10.032 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.132 s] +[INFO] oscar4-data ........................................ SUCCESS [ 10.238 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 03:40 min -[INFO] Finished at: 2025-06-03T12:57:02Z +[INFO] Total time: 06:44 min +[INFO] Finished at: 2024-05-01T06:48:04Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -2918,24 +2954,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.280 s] -[INFO] oscar4-core ........................................ SUCCESS [ 0.041 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.027 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 0.029 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.021 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.026 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.025 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.022 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.021 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.022 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.020 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.020 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.020 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.675 s] +[INFO] oscar4-core ........................................ SUCCESS [ 0.186 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.043 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 0.120 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.192 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.241 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.146 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.041 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.064 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.054 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.050 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.059 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.058 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.714 s -[INFO] Finished at: 2025-06-03T12:57:03Z +[INFO] Total time: 2.275 s +[INFO] Finished at: 2024-05-01T06:48:08Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -pliboscar4-java --base-directory=/build/reproducible-path/oscar4-5.2.0\+dfsg --non-explore Analysing pom.xml... @@ -2985,12 +3021,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3058615/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1349328 and its subdirectories -I: Current time: Tue Jun 3 00:57:15 -12 2025 -I: pbuilder-time-stamp: 1748955435 +I: removing directory /srv/workspace/pbuilder/3058615 and its subdirectories +I: Current time: Wed May 1 20:48:34 +14 2024 +I: pbuilder-time-stamp: 1714546114