Diff of the two buildlogs: -- --- b1/build.log 2024-05-08 01:25:14.077557614 +0000 +++ b2/build.log 2024-05-08 01:28:27.821322269 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jun 9 19:46:48 -12 2025 -I: pbuilder-time-stamp: 1749541608 +I: Current time: Wed May 8 15:25:18 +14 2024 +I: pbuilder-time-stamp: 1715131518 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying 32-bits.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/801712/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 8 01:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='a7612770bfe240409fe2117f3e5dfc31' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='801712' - PS1='# ' - PS2='> ' + INVOCATION_ID=04d48a90593848bab46afc7588189f5e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3768070 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hda47Bfw/pbuilderrc_bzAc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hda47Bfw/b1 --logfile b1/build.log phylonium_1.7-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hda47Bfw/pbuilderrc_rqPV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hda47Bfw/b2 --logfile b2/build.log phylonium_1.7-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 9 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/801712/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 7 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +176,7 @@ Get: 30 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-6 [45.6 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdivsufsort-dev amd64 2.0.1-6 [18.8 kB] -Fetched 19.1 MB in 0s (54.0 MB/s) +Fetched 19.1 MB in 3s (7182 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -287,7 +319,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/phylonium-1.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../phylonium_1.7-3_source.changes dpkg-buildpackage: info: source package phylonium dpkg-buildpackage: info: source version 1.7-3 dpkg-buildpackage: info: source distribution unstable @@ -407,7 +443,7 @@ config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/phylonium-1.7' dh_auto_build - make -j42 + make -j20 make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' make all-recursive make[2]: Entering directory '/build/reproducible-path/phylonium-1.7' @@ -417,22 +453,22 @@ gcc -DHAVE_CONFIG_H -I. -I.. -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o revseqcmp.o revseqcmp.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mssse3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librevseqcmp_ssse3_a-revseqcmp_ssse3.o `test -f 'revseqcmp_ssse3.c' || echo './'`revseqcmp_ssse3.c +ar cru libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o librevseqcmp_avx2_a-revseqcmp_avx2.o `test -f 'revseqcmp_avx2.c' || echo './'`revseqcmp_avx2.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o seqcmp.o seqcmp.c -ar cru libcompat.a gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -msse2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_sse2_a-seqcmp_sse2.o `test -f 'seqcmp_sse2.c' || echo './'`seqcmp_sse2.c +ar: `u' modifier ignored since `D' is the default (see `U') gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_avx2_a-seqcmp_avx2.o `test -f 'seqcmp_avx2.c' || echo './'`seqcmp_avx2.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -mpopcnt -mavx512bw -mavx512vl -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/phylonium-1.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libseqcmp_avx512_a-seqcmp_avx512.o `test -f 'seqcmp_avx512.c' || echo './'`seqcmp_avx512.c -ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a -rm -f librevseqcmp_ssse3.a rm -f libseqcmp_sse2.a -ar cru librevseqcmp_ssse3.a librevseqcmp_ssse3_a-revseqcmp_ssse3.o ar cru libseqcmp_sse2.a libseqcmp_sse2_a-seqcmp_sse2.o ar: `u' modifier ignored since `D' is the default (see `U') +ranlib libseqcmp_sse2.a +rm -f librevseqcmp_ssse3.a +ar cru librevseqcmp_ssse3.a librevseqcmp_ssse3_a-revseqcmp_ssse3.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib librevseqcmp_ssse3.a -ranlib libseqcmp_sse2.a rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') @@ -440,13 +476,13 @@ rm -f libseqcmp_avx512.a ar cru libseqcmp_avx512.a libseqcmp_avx512_a-seqcmp_avx512.o ar: `u' modifier ignored since `D' is the default (see `U') -ranlib libseqcmp_avx512.a rm -f librevseqcmp_avx2.a rm -f libseqcmp_avx2.a ar cru librevseqcmp_avx2.a librevseqcmp_avx2_a-revseqcmp_avx2.o ar cru libseqcmp_avx2.a libseqcmp_avx2_a-seqcmp_avx2.o ar: `u' modifier ignored since `D' is the default (see `U') ar: `u' modifier ignored since `D' is the default (see `U') +ranlib libseqcmp_avx512.a ranlib librevseqcmp_avx2.a ranlib libseqcmp_avx2.a rm -f librevseqcmp.a @@ -482,7 +518,7 @@ make[2]: Leaving directory '/build/reproducible-path/phylonium-1.7' make[1]: Leaving directory '/build/reproducible-path/phylonium-1.7' dh_auto_test - make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 + make -j20 check "TESTSUITEFLAGS=-j20 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' Making check in libs make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' @@ -561,7 +597,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/phylonium/ - make -j42 install DESTDIR=/build/reproducible-path/phylonium-1.7/debian/phylonium AM_UPDATE_INFO_DIR=no + make -j20 install DESTDIR=/build/reproducible-path/phylonium-1.7/debian/phylonium AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/phylonium-1.7' Making install in libs make[2]: Entering directory '/build/reproducible-path/phylonium-1.7/libs' @@ -614,8 +650,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'phylonium-dbgsym' in '../phylonium-dbgsym_1.7-3_amd64.deb'. dpkg-deb: building package 'phylonium' in '../phylonium_1.7-3_amd64.deb'. +dpkg-deb: building package 'phylonium-dbgsym' in '../phylonium-dbgsym_1.7-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../phylonium_1.7-3_amd64.buildinfo dpkg-genchanges --build=binary -O../phylonium_1.7-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -623,12 +659,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3768070/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/801712 and its subdirectories -I: Current time: Mon Jun 9 19:48:12 -12 2025 -I: pbuilder-time-stamp: 1749541692 +I: removing directory /srv/workspace/pbuilder/3768070 and its subdirectories +I: Current time: Wed May 8 15:28:27 +14 2024 +I: pbuilder-time-stamp: 1715131707