Diff of the two buildlogs: -- --- b1/build.log 2024-05-08 19:11:48.810156253 +0000 +++ b2/build.log 2024-05-08 19:14:22.279623476 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 10 13:32:40 -12 2025 -I: pbuilder-time-stamp: 1749605560 +I: Current time: Thu May 9 09:11:52 +14 2024 +I: pbuilder-time-stamp: 1715195512 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1043856/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 8 19:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e5fdd352ad324ed4ad66455576b648fc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1043856' - PS1='# ' - PS2='> ' + INVOCATION_ID=89951dfc13a049308d788fa2c737ce3a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2982676 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.82ZwUKZQ/pbuilderrc_judO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.82ZwUKZQ/b1 --logfile b1/build.log r-bioc-rhdf5filters_1.14.1+dfsg-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.82ZwUKZQ/pbuilderrc_MDvo --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.82ZwUKZQ/b2 --logfile b2/build.log r-bioc-rhdf5filters_1.14.1+dfsg-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 9 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1043856/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 7 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -334,7 +366,7 @@ Get: 204 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.5+dfsg2-2 [358 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.48.1-2 [597 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1+b1 [103 kB] -Fetched 112 MB in 2s (48.0 MB/s) +Fetched 112 MB in 20s (5517 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -1010,8 +1042,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Jun 11 01:33:59 UTC 2025. -Universal Time is now: Wed Jun 11 01:33:59 UTC 2025. +Local time is now: Wed May 8 19:13:36 UTC 2024. +Universal Time is now: Wed May 8 19:13:36 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libvbz-hdf-plugin0t64:amd64 (1.0.2-3.1) ... @@ -1209,7 +1241,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-bioc-rhdf5filters-1.14.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-rhdf5filters_1.14.1+dfsg-3_source.changes +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-bioc-rhdf5filters-1.14.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-rhdf5filters_1.14.1+dfsg-3_source.changes dpkg-buildpackage: info: source package r-bioc-rhdf5filters dpkg-buildpackage: info: source version 1.14.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable @@ -1253,7 +1289,7 @@ dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R - rm -fr -- /tmp/dh-xdg-rundir-77tajP5A + rm -fr -- /tmp/dh-xdg-rundir-3p9JieQ0 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R @@ -1416,22 +1452,22 @@ chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/05/c0f89a456cc95e916fdfce097439da5e9cde86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/05/c0f89a456cc95e916fdfce097439da5e9cde86.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so + install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e + objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug + chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so + objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/1a/9e3adfb6810f47db4a855705b38215f9cc6f41.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/1a/9e3adfb6810f47db4a855705b38215f9cc6f41.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/1a/9e3adfb6810f47db4a855705b38215f9cc6f41.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/90 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/90/66b6c0784179d461f2b819bf94a21f032de8d0.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/90/66b6c0784179d461f2b819bf94a21f032de8d0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/90/66b6c0784179d461f2b819bf94a21f032de8d0.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so - install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e - objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug - chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so - objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/6e/97da4773d21b5dd8510b29094be1d1668733b1.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25/06771079c50908ffb14a8bab4e8ab10a34db2a.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25/06771079c50908ffb14a8bab4e8ab10a34db2a.debug @@ -1452,7 +1488,7 @@ mv debian/.debhelper/generated/r-bioc-rhdf5filters/triggers.new debian/.debhelper/generated/r-bioc-rhdf5filters/triggers dh_shlibdeps -a -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN - dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so + dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so dh_installdeb -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN install -p -m0644 debian/.debhelper/generated/r-bioc-rhdf5filters/triggers debian/r-bioc-rhdf5filters/DEBIAN/triggers @@ -1473,8 +1509,8 @@ cd debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=R - dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root .. dpkg-deb --root-owner-group --build debian/r-bioc-rhdf5filters .. + dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root .. dpkg-deb: building package 'r-bioc-rhdf5filters-dbgsym' in '../r-bioc-rhdf5filters-dbgsym_1.14.1+dfsg-3_amd64.deb'. dpkg-deb: building package 'r-bioc-rhdf5filters' in '../r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.buildinfo @@ -1484,12 +1520,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2982676/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1043856 and its subdirectories -I: Current time: Tue Jun 10 13:34:47 -12 2025 -I: pbuilder-time-stamp: 1749605687 +I: removing directory /srv/workspace/pbuilder/2982676 and its subdirectories +I: Current time: Thu May 9 09:14:21 +14 2024 +I: pbuilder-time-stamp: 1715195661