Diff of the two buildlogs: -- --- b1/build.log 2024-05-19 07:44:04.104826372 +0000 +++ b2/build.log 2024-05-19 07:45:21.697522217 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat May 18 19:42:53 -12 2024 -I: pbuilder-time-stamp: 1716104573 +I: Current time: Sun Jun 22 04:07:06 +14 2025 +I: pbuilder-time-stamp: 1750514826 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3637288/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 21 14:07 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f7485e84efaf49949b056362ef2a4941' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3637288' - PS1='# ' - PS2='> ' + INVOCATION_ID=795cef6e706544dd845ad3592bb3a49e + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1313505 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h8AD9e5y/pbuilderrc_tnlQ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h8AD9e5y/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h8AD9e5y/pbuilderrc_r8gd --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h8AD9e5y/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 17 07:42 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3637288/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 21 14:05 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -288,7 +320,7 @@ Get: 166 http://deb.debian.org/debian unstable/main arm64 libfml0 arm64 0.1+git20190320.b499514-1+b1 [65.9 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libfml-dev arm64 0.1+git20190320.b499514-1+b1 [79.5 kB] -Fetched 216 MB in 2s (127 MB/s) +Fetched 216 MB in 1s (234 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19763 files and directories currently installed.) @@ -1169,7 +1201,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1223,18 +1259,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.479 secs. -The client will now receive all logging from the daemon (pid: 3677772). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-3677772.out.log +An attempt to start the daemon took 0.945 secs. +The client will now receive all logging from the daemon (pid: 1333134). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1333134.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@36864bd7 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@36864bd7 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@af42a62 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@71f9c314 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@71f9c314 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@173d7d47 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c4320c1 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2ad9c825 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1251,23 +1287,23 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@17b53e67 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@59590b3e Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@af42a62 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5d95b281 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@44b513ff -:compileJava (Thread[Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@173d7d47 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f086e4d +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3a1482d +:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.019 secs. -Up-to-date check for task ':compileJava' took 0.018 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Up-to-date check for task ':compileJava' took 0.025 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.953 secs. -:buildFermiLib (Thread[Task worker for ':',5,main]) started. +:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.977 secs. +:buildFermiLib (Thread[Task worker for ':' Thread 3,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Up-to-date check for task ':buildFermiLib' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':buildFermiLib' took 0.003 secs. It is not up-to-date because: No history is available. using /usr/lib/jvm/java-17-openjdk-arm64 -> /usr/lib/jvm/java-17-openjdk-arm64 as JAVA_HOME Starting process 'command 'make''. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c Command: make @@ -1276,33 +1312,33 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-17-openjdk-arm64/include -I/usr/lib/jvm/java-17-openjdk-arm64/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/aarch64-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 0.264 secs. -:processResources (Thread[Task worker for ':',5,main]) started. +:buildFermiLib (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.357 secs. +:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. -:classes (Thread[Task worker for ':',5,main]) started. +:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.004 secs. +:classes (Thread[Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[Task worker for ':',5,main]) started. +:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.003 secs. +:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.103 secs. -:jar (Thread[Task worker for ':',5,main]) started. +:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.117 secs. +:jar (Thread[Task worker for ':' Thread 3,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.008 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.01 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':',5,main]) completed. Took 0.052 secs. +:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.072 secs. -BUILD SUCCESSFUL in 8s +BUILD SUCCESSFUL in 6s 4 actionable tasks: 4 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' @@ -1318,17 +1354,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.053 secs. -The client will now receive all logging from the daemon (pid: 3685928). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-3685928.out.log +An attempt to start the daemon took 0.988 secs. +The client will now receive all logging from the daemon (pid: 1334024). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1334024.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@627e9387 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@627e9387 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@69646d0c +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@320b9834 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@320b9834 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4af47da8 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6cdf6863 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@1877d639 Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] @@ -1340,23 +1376,23 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@927c60c +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@12e7b674 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@69646d0c -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1320597b -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@85393b1 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4af47da8 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3a4719bf +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@19a4290b :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.014 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.051 secs). +Putting task artifact state for task ':compileJava' into context took 0.011 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.04 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.128 secs. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.087 secs. :buildFermiLib (Thread[Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.006 secs). +Skipping task ':buildFermiLib' as it is up-to-date (took 0.005 secs). :buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 0.028 secs. +:buildFermiLib (Thread[Task worker for ':',5,main]) completed. Took 0.012 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. @@ -1372,33 +1408,33 @@ :compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@2f35f5c9 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3d8d6700 Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.527 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.573 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 1.512 secs. -:processTestResources (Thread[Task worker for ':' Thread 8,5,main]) started. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 1.526 secs. +:processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.011 secs. -:testClasses (Thread[Task worker for ':' Thread 8,5,main]) started. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.002 secs. +:testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 0.0 secs. -:test (Thread[Task worker for ':' Thread 8,5,main]) started. +:testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.106 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.08 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath4462465635262640361txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-17-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath3105754806555502838txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. @@ -1407,12 +1443,12 @@ WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.013 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test +Finished generating test XML results (0.009 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.086 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':' Thread 8,5,main]) completed. Took 2.105 secs. +Finished generating test html results (0.022 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':',5,main]) completed. Took 1.418 secs. -BUILD SUCCESSFUL in 9s +BUILD SUCCESSFUL in 7s 4 actionable tasks: 2 executed, 2 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg' create-stamp debian/debhelper-build-stamp @@ -1447,12 +1483,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1313505/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3637288 and its subdirectories -I: Current time: Sat May 18 19:44:03 -12 2024 -I: pbuilder-time-stamp: 1716104643 +I: removing directory /srv/workspace/pbuilder/1313505 and its subdirectories +I: Current time: Sun Jun 22 04:08:19 +14 2025 +I: pbuilder-time-stamp: 1750514899