Diff of the two buildlogs: -- --- b1/build.log 2024-05-10 10:03:42.037281677 +0000 +++ b2/build.log 2024-05-10 10:05:24.148934822 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jun 12 04:25:44 -12 2025 -I: pbuilder-time-stamp: 1749745544 +I: Current time: Fri Jun 13 06:26:44 +14 2025 +I: pbuilder-time-stamp: 1749745604 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking schroedinger-coordgenlibs_3.0.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/838324/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 12 16:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='93a5719a33c24f97982fe212db4ddbed' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='838324' - PS1='# ' - PS2='> ' + INVOCATION_ID=6f8c9c1abcbe4073b4bc20f618b5f29f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2393856 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A6Y6ndpd/pbuilderrc_w1ed --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A6Y6ndpd/b1 --logfile b1/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A6Y6ndpd/pbuilderrc_MoWV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A6Y6ndpd/b2 --logfile b2/build.log schroedinger-coordgenlibs_3.0.2-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 11 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/838324/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 73 http://deb.debian.org/debian unstable/main arm64 libmaeparser1 arm64 1.3.1-1+b1 [84.7 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libmaeparser-dev arm64 1.3.1-1+b1 [13.6 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1 [915 kB] -Fetched 58.9 MB in 0s (160 MB/s) +Fetched 58.9 MB in 1s (88.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) @@ -511,7 +543,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../schroedinger-coordgenlibs_3.0.2-1_source.changes dpkg-buildpackage: info: source package schroedinger-coordgenlibs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable @@ -553,7 +589,7 @@ -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem -- Found Boost: /usr/lib/aarch64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem unit_test_framework --- Configuring done (0.9s) +-- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -578,27 +614,27 @@ make -f CMakeFiles/coordgen.dir/build.make CMakeFiles/coordgen.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 4%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmentBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmentBuilder.cpp -[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -[ 23%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -[ 28%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o +[ 9%] Building CXX object CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenFragmenter.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenFragmenter.cpp -[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o +[ 14%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMacrocycleBuilder.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMacrocycleBuilder.cpp +[ 19%] Building CXX object CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenMinimizer.cpp +[ 23%] Building CXX object CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o +[ 28%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -MF CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o.d -o CMakeFiles/coordgen.dir/CoordgenTemplates.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/CoordgenTemplates.cpp /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizer.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizer.cpp -[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp +[ 33%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerAtom.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerAtom.cpp +[ 38%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o [ 42%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerBond.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerBond.cpp +[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerFragment.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerFragment.cpp -[ 47%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp -[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o +[ 52%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMarchingSquares.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMarchingSquares.cpp +/usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerMolecule.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerMolecule.cpp [ 57%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o /usr/bin/c++ -DIN_COORDGEN -Dcoordgen_EXPORTS -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fPIC -fvisibility=hidden -Wall -Wextra -Werror -MD -MT CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -MF CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o.d -o CMakeFiles/coordgen.dir/sketcherMinimizerResidue.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/sketcherMinimizerResidue.cpp [ 61%] Building CXX object CMakeFiles/coordgen.dir/sketcherMinimizerResidueInteraction.cpp.o @@ -612,28 +648,28 @@ make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 71%] Built target coordgen make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/depend -make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend -make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir/CMakeFiles/example.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/depend make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_coordgen.dir/DependInfo.cmake "--color=" +make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/depend +make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/schroedinger-coordgenlibs-3.0.2 /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test/CMakeFiles/test_smilesparser.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_coordgen.dir/build.make test/CMakeFiles/test_coordgen.dir/build -make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f example_dir/CMakeFiles/example.dir/build.make example_dir/CMakeFiles/example.dir/build +make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' make -f test/CMakeFiles/test_smilesparser.dir/build.make test/CMakeFiles/test_smilesparser.dir/build make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' [ 76%] Building CXX object test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DSOURCE_DIR=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2\" -DTEST_SAMPLES_PATH=\"/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test\" -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -MF CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o.d -o CMakeFiles/test_coordgen.dir/test_coordgen.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_coordgen.cpp [ 80%] Building CXX object test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -[ 85%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT test/CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -MF CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o.d -o CMakeFiles/test_smilesparser.dir/test_smilesparser.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/test/test_smilesparser.cpp +[ 85%] Building CXX object example_dir/CMakeFiles/example.dir/example.cpp.o cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/c++ -DBOOST_ALL_DYN_LINK -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -g -O2 -ffile-prefix-map=/build/reproducible-path/schroedinger-coordgenlibs-3.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -Wextra -Werror -MD -MT example_dir/CMakeFiles/example.dir/example.cpp.o -MF CMakeFiles/example.dir/example.cpp.o.d -o CMakeFiles/example.dir/example.cpp.o -c /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/example_dir/example.cpp [ 90%] Linking CXX executable example cd /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/example_dir && /usr/bin/cmake -E cmake_link_script CMakeFiles/example.dir/link.txt --verbose=1 @@ -688,21 +724,21 @@ 3: Working Directory: /build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu/test 3: Test timeout computed to be: 1500 1: (-50, 0) (0, 0) -1/3 Test #1: example .......................... Passed 0.01 sec -2: Running 16 test cases... -2: -2: *** No errors detected -2:  -2/3 Test #2: test_coordgen .................... Passed 0.98 sec +1/3 Test #1: example .......................... Passed 0.04 sec 3: Running 16 test cases... 3: 3: *** No errors detected 3:  -3/3 Test #3: test_smilesparser ................ Passed 0.99 sec +2/3 Test #3: test_smilesparser ................ Passed 1.07 sec +2: Running 16 test cases... +2: +2: *** No errors detected +2:  +3/3 Test #2: test_coordgen .................... Passed 1.09 sec 100% tests passed, 0 tests failed out of 3 -Total Test time (real) = 1.00 sec +Total Test time (real) = 1.11 sec make[1]: Leaving directory '/build/reproducible-path/schroedinger-coordgenlibs-3.0.2/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -772,12 +808,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2393856/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/838324 and its subdirectories -I: Current time: Thu Jun 12 04:26:40 -12 2025 -I: pbuilder-time-stamp: 1749745600 +I: removing directory /srv/workspace/pbuilder/2393856 and its subdirectories +I: Current time: Fri Jun 13 06:28:22 +14 2025 +I: pbuilder-time-stamp: 1749745702