Diff of the two buildlogs: -- --- b1/build.log 2024-05-16 06:26:39.169349763 +0000 +++ b2/build.log 2024-05-16 06:46:55.653638545 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jun 18 00:40:58 -12 2025 -I: pbuilder-time-stamp: 1750250458 +I: Current time: Thu May 16 20:26:44 +14 2024 +I: pbuilder-time-stamp: 1715840804 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1777272/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 16 06:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='b767ce557485402aa00e8a8702d31991' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1777272' - PS1='# ' - PS2='> ' + INVOCATION_ID=7cad4c4682514be38dc51313a7512b18 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=479368 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y2TLJajS/pbuilderrc_jn5N --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y2TLJajS/b1 --logfile b1/build.log seqan-needle_1.0.2+ds-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y2TLJajS/pbuilderrc_khKz --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y2TLJajS/b2 --logfile b2/build.log seqan-needle_1.0.2+ds-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 17 14:05 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1777272/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 15 07:42 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -197,7 +229,7 @@ Get: 71 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-1+b2 [29.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] -Fetched 84.9 MB in 1s (138 MB/s) +Fetched 84.9 MB in 1s (103 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19746 files and directories currently installed.) @@ -504,7 +536,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.2+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -542,8 +578,8 @@ -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. --- Configuring done (5.7s) --- Generating done (0.0s) +-- Configuring done (15.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -575,8 +611,8 @@ make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o -[ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp +[ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] @@ -787,8 +823,8 @@ Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile api_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test' -cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. +cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/CMakeFiles 15 @@ -902,8 +938,8 @@ Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile cli_test gmake[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test' -cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. +cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/CMakeFiles 70 @@ -1350,12 +1386,12 @@ 1: [----------] Global test environment set-up. 1: [----------] 3 tests from count 1: [ RUN ] count.small_example -1: [ OK ] count.small_example (1 ms) +1: [ OK ] count.small_example (9 ms) 1: [ RUN ] count.small_example_paired 1: [ OK ] count.small_example_paired (1 ms) 1: [ RUN ] count.small_example_exclude 1: [ OK ] count.small_example_exclude (0 ms) -1: [----------] 3 tests from count (2 ms total) +1: [----------] 3 tests from count (10 ms total) 1: 1: [----------] 1 test from genome 1: [ RUN ] genome.small_example @@ -1363,15 +1399,15 @@ 1: [----------] 1 test from genome (0 ms total) 1: 1: [----------] Global test environment tear-down -1: [==========] 4 tests from 2 test suites ran. (2 ms total) +1: [==========] 4 tests from 2 test suites ran. (10 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete 2: [ RUN ] delete.no_given_thresholds -2: [ OK ] delete.no_given_thresholds (1 ms) -2: [----------] 1 test from delete (1 ms total) +2: [ OK ] delete.no_given_thresholds (9 ms) +2: [----------] 1 test from delete (9 ms total) 2: 2: [----------] 8 tests from insert 2: [ RUN ] insert.ibf @@ -1389,18 +1425,18 @@ 2: [ RUN ] insert.ibfmin_no_given_thresholds 2: [ OK ] insert.ibfmin_no_given_thresholds (0 ms) 2: [ RUN ] insert.delete_ibfmin_no_given_thresholds -2: [ OK ] insert.delete_ibfmin_no_given_thresholds (8 ms) -2: [----------] 8 tests from insert (11 ms total) +2: [ OK ] insert.delete_ibfmin_no_given_thresholds (9 ms) +2: [----------] 8 tests from insert (12 ms total) 2: 2: [----------] Global test environment tear-down -2: [==========] 9 tests from 2 test suites ran. (12 ms total) +2: [==========] 9 tests from 2 test suites ran. (22 ms total) 2: [ PASSED ] 9 tests. 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate 3: [ RUN ] estimate.small_example -3: [ OK ] estimate.small_example (5 ms) +3: [ OK ] estimate.small_example (9 ms) 3: [ RUN ] estimate.small_example_uncompressed 3: [ OK ] estimate.small_example_uncompressed (0 ms) 3: [ RUN ] estimate.small_example_gene_not_found @@ -1417,7 +1453,7 @@ 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf 4: [ RUN ] ibf.given_expression_thresholds -4: [ OK ] ibf.given_expression_thresholds (1 ms) +4: [ OK ] ibf.given_expression_thresholds (9 ms) 4: [ RUN ] ibf.given_expression_thresholds_include_file 4: [ OK ] ibf.given_expression_thresholds_include_file (0 ms) 4: [ RUN ] ibf.given_expression_thresholds_exclude_file @@ -1427,7 +1463,7 @@ 4: [ RUN ] ibf.expression_thresholds_by_genome 4: [ OK ] ibf.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf.throws -4: [ OK ] ibf.throws (0 ms) +4: [ OK ] ibf.throws (10 ms) 4: [ RUN ] ibf.given_cutoffs 4: [ OK ] ibf.given_cutoffs (0 ms) 4: [ RUN ] ibf.different_file_sizes @@ -1440,13 +1476,13 @@ 5: [ RUN ] ibfmin.no_given_expression_thresholds 5: [ OK ] ibfmin.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin.expression_thresholds_by_genome -5: [ OK ] ibfmin.expression_thresholds_by_genome (1 ms) +5: [ OK ] ibfmin.expression_thresholds_by_genome (12 ms) 5: [ RUN ] ibfmin.different_shape 5: [ OK ] ibfmin.different_shape (0 ms) -5: [----------] 4 tests from ibfmin (2 ms total) +5: [----------] 4 tests from ibfmin (13 ms total) 5: 5: [----------] Global test environment tear-down -5: [==========] 4 tests from 1 test suite ran. (2 ms total) +5: [==========] 4 tests from 1 test suite ran. (13 ms total) 5: [ PASSED ] 4 tests. 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. @@ -1461,53 +1497,57 @@ 6: [ RUN ] minimiser.cutoff_by_filesize 6: [ OK ] minimiser.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser.small_example_two_threads -6: [ OK ] minimiser.small_example_two_threads (4 ms) +6: [ OK ] minimiser.small_example_two_threads (18 ms) 6: [ RUN ] minimiser.small_example_include 6: [ OK ] minimiser.small_example_include (0 ms) 6: [ RUN ] minimiser.small_example_exclude 6: [ OK ] minimiser.small_example_exclude (0 ms) 6: [ RUN ] minimiser.small_example_shape 6: [ OK ] minimiser.small_example_shape (0 ms) -6: [----------] 8 tests from minimiser (7 ms total) +6: [----------] 8 tests from minimiser (22 ms total) 6: 6: [----------] Global test environment tear-down -6: [==========] 8 tests from 1 test suite ran. (7 ms total) +6: [==========] 8 tests from 1 test suite ran. (38 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options -7: [ OK ] needle_options_test.no_options (31 ms) +7: [ OK ] needle_options_test.no_options (20 ms) 7: [ RUN ] needle_options_test.fail_no_argument -7: [ OK ] needle_options_test.fail_no_argument (30 ms) -7: [----------] 2 tests from needle_options_test (62 ms total) +7: [ OK ] needle_options_test.fail_no_argument (24 ms) +7: [----------] 2 tests from needle_options_test (44 ms total) 7: 7: [----------] Global test environment tear-down -7: [==========] 2 tests from 1 test suite ran. (62 ms total) +7: [==========] 2 tests from 1 test suite ran. (44 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options -8: [ OK ] ibf_options_test.ibf_no_options (33 ms) +8: [ OK ] ibf_options_test.ibf_no_options (29 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument -8: [ OK ] ibf_options_test.ibf_fail_no_argument (30 ms) +8: [ OK ] ibf_options_test.ibf_fail_no_argument (31 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction +8: [ OK ] ibf_options_test.ibf_fail_contradiction (31 ms) +8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options -9: [ OK ] insert_options_test.insert_no_options (37 ms) +9: [ OK ] insert_options_test.insert_no_options (29 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument +9: [ OK ] insert_options_test.insert_fail_no_argument (32 ms) +9: [ RUN ] insert_options_test.with_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options -10: [ OK ] minimiser_options_test.no_options (30 ms) +10: [ OK ] minimiser_options_test.no_options (29 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. @@ -1519,161 +1559,157 @@ 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options - 1/13 Test #1: test/api/count_test ............... Passed 0.19 sec - 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.17 sec - 3/13 Test #5: test/api/ibfmin_test .............. Passed 0.12 sec - 4/13 Test #6: test/api/minimiser_test ........... Passed 0.10 sec - 5/13 Test #7: test/cli/needle_options_test ...... Passed 0.09 sec + 1/13 Test #1: test/api/count_test ............... Passed 0.28 sec + 2/13 Test #2: test/api/insert_delete_test ....... Passed 0.26 sec + 3/13 Test #5: test/api/ibfmin_test .............. Passed 0.21 sec + 4/13 Test #6: test/api/minimiser_test ........... Passed 0.20 sec + 5/13 Test #7: test/cli/needle_options_test ...... Passed 0.18 sec test 13 Start 13: test/cli/delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test/cli/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 -8: [ OK ] ibf_options_test.ibf_fail_contradiction (24 ms) -8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 -9: [ OK ] insert_options_test.insert_fail_no_argument (22 ms) -9: [ RUN ] insert_options_test.with_argument -10: [ OK ] minimiser_options_test.fail_no_argument (22 ms) +8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (27 ms) +8: [ RUN ] ibf_options_test.ibf_fail_no_fpr +10: [ OK ] minimiser_options_test.fail_no_argument (39 ms) 10: [ RUN ] minimiser_options_test.with_arguments -11: [ OK ] estimate_options_test.no_options (33 ms) +11: [ OK ] estimate_options_test.no_options (36 ms) 11: [ RUN ] estimate_options_test.fail_no_argument -12: [ OK ] count_options_test.no_options (25 ms) +11: [ OK ] estimate_options_test.fail_no_argument (24 ms) +11: [ RUN ] estimate_options_test.with_argument +12: [ OK ] count_options_test.no_options (45 ms) 12: [ RUN ] count_options_test.fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options -13: [ OK ] delete_options_test.delete_no_options (5 ms) -13: [ RUN ] delete_options_test.with_argument -11: [ OK ] estimate_options_test.fail_no_argument (23 ms) -11: [ RUN ] estimate_options_test.with_argument -12: [ OK ] count_options_test.fail_no_argument (32 ms) -12: [ RUN ] count_options_test.with_arguments -10: [ OK ] minimiser_options_test.with_arguments (36 ms) +10: [ OK ] minimiser_options_test.with_arguments (40 ms) 10: [ RUN ] minimiser_options_test.cutoff -8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (40 ms) -8: [ RUN ] ibf_options_test.ibf_fail_no_fpr -10: [ OK ] minimiser_options_test.cutoff (29 ms) -10: [ RUN ] minimiser_options_test.multiple_sample -8: [ OK ] ibf_options_test.ibf_fail_no_fpr (32 ms) +8: [ OK ] ibf_options_test.ibf_fail_no_fpr (40 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs -12: [ OK ] count_options_test.with_arguments (43 ms) +12: [ OK ] count_options_test.fail_no_argument (36 ms) +12: [ RUN ] count_options_test.with_arguments +13: [ OK ] delete_options_test.delete_no_options (44 ms) +13: [ RUN ] delete_options_test.with_argument +8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (39 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument +10: [ OK ] minimiser_options_test.cutoff (44 ms) +10: [ RUN ] minimiser_options_test.multiple_sample +12: [ OK ] count_options_test.with_arguments (39 ms) 12: [ RUN ] count_options_test.multithreads -10: [ OK ] minimiser_options_test.multiple_sample (28 ms) +10: [ OK ] minimiser_options_test.multiple_sample (40 ms) 10: [ RUN ] minimiser_options_test.multithreads -8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (27 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument -12: [ OK ] count_options_test.multithreads (47 ms) +12: [ OK ] count_options_test.multithreads (39 ms) 12: [ RUN ] count_options_test.paired -10: [ OK ] minimiser_options_test.multithreads (38 ms) -10: [ RUN ] minimiser_options_test.paired -12: [ OK ] count_options_test.paired (32 ms) -12: [----------] 5 tests from count_options_test (182 ms total) +12: [ OK ] count_options_test.paired (51 ms) +12: [----------] 5 tests from count_options_test (213 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options -10: [ OK ] minimiser_options_test.paired (36 ms) -10: [ RUN ] minimiser_options_test.invalid_argument -12: [ OK ] genome_options_test.no_options (35 ms) +10: [ OK ] minimiser_options_test.multithreads (58 ms) +10: [ RUN ] minimiser_options_test.paired +12: [ OK ] genome_options_test.no_options (31 ms) 12: [ RUN ] genome_options_test.fail_no_argument -10: [ OK ] minimiser_options_test.invalid_argument (31 ms) -10: [----------] 8 tests from minimiser_options_test (253 ms total) +10: [ OK ] minimiser_options_test.paired (37 ms) +10: [ RUN ] minimiser_options_test.invalid_argument +12: [ OK ] genome_options_test.fail_no_argument (35 ms) +12: [ RUN ] genome_options_test.with_arguments +10: [ OK ] minimiser_options_test.invalid_argument (34 ms) +10: [----------] 8 tests from minimiser_options_test (325 ms total) 10: 10: [----------] Global test environment tear-down -10: [==========] 8 tests from 1 test suite ran. (253 ms total) +10: [==========] 8 tests from 1 test suite ran. (325 ms total) 10: [ PASSED ] 8 tests. - 6/13 Test #10: test/cli/minimiser_options_test ... Passed 0.27 sec -12: [ OK ] genome_options_test.fail_no_argument (28 ms) -12: [ RUN ] genome_options_test.with_arguments -12: [ OK ] genome_options_test.with_arguments (44 ms) -12: [----------] 3 tests from genome_options_test (107 ms total) + 6/13 Test #10: test/cli/minimiser_options_test ... Passed 0.36 sec +12: [ OK ] genome_options_test.with_arguments (23 ms) +12: [----------] 3 tests from genome_options_test (91 ms total) 12: 12: [----------] Global test environment tear-down -12: [==========] 8 tests from 2 test suites ran. (290 ms total) +12: [==========] 8 tests from 2 test suites ran. (304 ms total) 12: [ PASSED ] 8 tests. - 7/13 Test #12: test/cli/count_options_test ....... Passed 0.31 sec -4: [ OK ] ibf.different_file_sizes (1261 ms) -4: [----------] 8 tests from ibf (1264 ms total) + 7/13 Test #12: test/cli/count_options_test ....... Passed 0.32 sec +4: [ OK ] ibf.different_file_sizes (5079 ms) +4: [----------] 8 tests from ibf (5100 ms total) 4: 4: [----------] Global test environment tear-down -4: [==========] 8 tests from 1 test suite ran. (1264 ms total) +4: [==========] 8 tests from 1 test suite ran. (5100 ms total) 4: [ PASSED ] 8 tests. - 8/13 Test #4: test/api/ibf_test ................. Passed 1.28 sec -8: [ OK ] ibf_options_test.ibf_with_argument (2287 ms) + 8/13 Test #4: test/api/ibf_test ................. Passed 5.12 sec +8: [ OK ] ibf_options_test.ibf_with_argument (5234 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options -9: [ OK ] insert_options_test.with_argument (3030 ms) -9: [----------] 3 tests from insert_options_test (3090 ms total) +9: [ OK ] insert_options_test.with_argument (8942 ms) +9: [----------] 3 tests from insert_options_test (9004 ms total) 9: 9: [----------] Global test environment tear-down -9: [==========] 3 tests from 1 test suite ran. (3090 ms total) +9: [==========] 3 tests from 1 test suite ran. (9004 ms total) 9: [ PASSED ] 3 tests. - 9/13 Test #9: test/cli/insert_options_test ...... Passed 3.11 sec -3: [ OK ] estimate.example (3301 ms) + 9/13 Test #9: test/cli/insert_options_test ...... Passed 9.03 sec +3: [ OK ] estimate.example (9529 ms) 3: [ RUN ] estimate.example_multiple_threads -8: [ OK ] ibf_options_test.ibf_with_argument_with_options (1375 ms) -8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape -11: [ OK ] estimate_options_test.with_argument (4172 ms) +11: [ OK ] estimate_options_test.with_argument (9359 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method -13: [ OK ] delete_options_test.with_argument (5157 ms) -13: [----------] 2 tests from delete_options_test (5163 ms total) -13: -13: [----------] Global test environment tear-down -13: [==========] 2 tests from 1 test suite ran. (5163 ms total) -13: [ PASSED ] 2 tests. -10/13 Test #13: test/cli/delete_options_test ...... Passed 5.18 sec -3: [ OK ] estimate.example_multiple_threads (2139 ms) -3: [ RUN ] estimate.example_different_expressions_per_level -8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (1824 ms) +8: [ OK ] ibf_options_test.ibf_with_argument_with_options (4061 ms) +8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape +8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (3908 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options -8: [ OK ] ibf_options_test.ibfmin_no_options (23 ms) +8: [ OK ] ibf_options_test.ibfmin_no_options (15 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument -8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (27 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (12 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (24 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 -8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (23 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (27 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (23 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs -8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (27 ms) +8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (15 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument -8: [ OK ] ibf_options_test.ibfmin_with_argument (28 ms) +8: [ OK ] ibf_options_test.ibfmin_with_argument (24 ms) 8: [ RUN ] ibf_options_test.compressed -8: [ OK ] ibf_options_test.compressed (31 ms) +8: [ OK ] ibf_options_test.compressed (24 ms) 8: [ RUN ] ibf_options_test.more_hash_functions -8: [ OK ] ibf_options_test.more_hash_functions (27 ms) +8: [ OK ] ibf_options_test.more_hash_functions (35 ms) 8: [ RUN ] ibf_options_test.expression_thresholds -8: [ OK ] ibf_options_test.expression_thresholds (27 ms) -8: [----------] 19 tests from ibf_options_test (5945 ms total) +8: [ OK ] ibf_options_test.expression_thresholds (28 ms) +8: [----------] 19 tests from ibf_options_test (13641 ms total) 8: 8: [----------] Global test environment tear-down -8: [==========] 19 tests from 1 test suite ran. (5945 ms total) +8: [==========] 19 tests from 1 test suite ran. (13641 ms total) 8: [ PASSED ] 19 tests. -11/13 Test #8: test/cli/ibf_options_test ......... Passed 5.96 sec -3: [ OK ] estimate.example_different_expressions_per_level (1148 ms) -3: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads -11: [ OK ] estimate_options_test.with_argument_normalization_method (2767 ms) +10/13 Test #8: test/cli/ibf_options_test ......... Passed 13.67 sec +13: [ OK ] delete_options_test.with_argument (15083 ms) +13: [----------] 2 tests from delete_options_test (15128 ms total) +13: +13: [----------] Global test environment tear-down +13: [==========] 2 tests from 1 test suite ran. (15128 ms total) +13: [ PASSED ] 2 tests. +11/13 Test #13: test/cli/delete_options_test ...... Passed 15.16 sec +3: [ OK ] estimate.example_multiple_threads (6661 ms) +3: [ RUN ] estimate.example_different_expressions_per_level +11: [ OK ] estimate_options_test.with_argument_normalization_method (6987 ms) 11: [ RUN ] estimate_options_test.with_argument_out -3: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (1128 ms) -3: [----------] 10 tests from estimate (7726 ms total) -3: -3: [----------] Global test environment tear-down -3: [==========] 10 tests from 1 test suite ran. (7726 ms total) -3: [ PASSED ] 10 tests. -12/13 Test #3: test/api/estimate_test ............ Passed 7.74 sec -11: [ OK ] estimate_options_test.with_argument_out (1984 ms) -11: [----------] 5 tests from estimate_options_test (8981 ms total) +3: [ OK ] estimate.example_different_expressions_per_level (3406 ms) +3: [ RUN ] estimate.example_different_expressions_per_level_multiple_threads +11: [ OK ] estimate_options_test.with_argument_out (4832 ms) +11: [----------] 5 tests from estimate_options_test (21240 ms total) 11: 11: [----------] Global test environment tear-down -11: [==========] 5 tests from 1 test suite ran. (8981 ms total) +11: [==========] 5 tests from 1 test suite ran. (21240 ms total) 11: [ PASSED ] 5 tests. -13/13 Test #11: test/cli/estimate_options_test .... Passed 8.99 sec +12/13 Test #11: test/cli/estimate_options_test .... Passed 21.26 sec +3: [ OK ] estimate.example_different_expressions_per_level_multiple_threads (2525 ms) +3: [----------] 10 tests from estimate (22134 ms total) +3: +3: [----------] Global test environment tear-down +3: [==========] 10 tests from 1 test suite ran. (22134 ms total) +3: [ PASSED ] 10 tests. +13/13 Test #3: test/api/estimate_test ............ Passed 22.15 sec 100% tests passed, 0 tests failed out of 13 -Total Test time (real) = 365.21 sec +Total Test time (real) = 769.06 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-aarch64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep @@ -1696,9 +1732,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.2+ds-2_arm64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.2+ds-2_all.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.2+ds-2_arm64.deb'. +dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.2+ds-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.2+ds-2_arm64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.2+ds-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1706,12 +1742,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/479368/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1777272 and its subdirectories -I: Current time: Wed Jun 18 00:49:37 -12 2025 -I: pbuilder-time-stamp: 1750250977 +I: removing directory /srv/workspace/pbuilder/479368 and its subdirectories +I: Current time: Thu May 16 20:46:54 +14 2024 +I: pbuilder-time-stamp: 1715842014