Diff of the two buildlogs: -- --- b1/build.log 2024-04-29 01:58:16.518247257 +0000 +++ b2/build.log 2024-04-29 02:19:37.827668880 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 28 13:50:00 -12 2024 -I: pbuilder-time-stamp: 1714355400 +I: Current time: Mon Apr 29 15:58:31 +14 2024 +I: pbuilder-time-stamp: 1714355911 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -33,52 +33,84 @@ dpkg-source: info: applying no_future_dependency.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/30488/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 29 01:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='2e152f8ead3c41c1a520737bc5329101' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='30488' - PS1='# ' - PS2='> ' + INVOCATION_ID=ff3cab0fbef94d28bf3406d8a064688c + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11906 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/pbuilderrc_wz02 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/b1 --logfile b1/build.log python-cobra_0.29.0-2.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/pbuilderrc_k9s1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2mpfoWM5/b2 --logfile b2/build.log python-cobra_0.29.0-2.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 28 07:44 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/30488/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 27 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -386,7 +418,7 @@ Get: 212 http://deb.debian.org/debian unstable/main armhf python3-sbml5 armhf 5.20.2+dfsg-3 [3121 kB] Get: 213 http://deb.debian.org/debian unstable/main armhf python3-simplejson armhf 3.19.2-1+b1 [65.5 kB] Get: 214 http://deb.debian.org/debian unstable/main armhf python3-tabulate all 0.8.10-1 [38.8 kB] -Fetched 136 MB in 5s (25.8 MB/s) +Fetched 136 MB in 4s (38.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19440 files and directories currently installed.) @@ -1071,8 +1103,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Apr 29 01:51:15 UTC 2024. -Universal Time is now: Mon Apr 29 01:51:15 UTC 2024. +Local time is now: Mon Apr 29 02:02:14 UTC 2024. +Universal Time is now: Mon Apr 29 02:02:14 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1283,7 +1315,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cobra-0.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.0-2_source.changes +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cobra-0.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.0-2_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.0-2 dpkg-buildpackage: info: source distribution unstable @@ -1319,88 +1355,88 @@ creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra +creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation +copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core -copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core +copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data -creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium -copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util +copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io -copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io +copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary -copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary -creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util -creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis +copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary +copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium +copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling -copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling +copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web +copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web +copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web -copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data -copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data +copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build; python3.11 -m pytest tests @@ -1409,7 +1445,7 @@ benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.0 configfile: tox.ini -plugins: anyio-4.3.0, mock-3.12.0, benchmark-4.0.0 +plugins: mock-3.12.0, benchmark-4.0.0, anyio-4.3.0 collected 551 items tests/test_core/test_configuration.py ...... [ 1%] @@ -1594,46 +1630,46 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ -Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[cplex] 17.2390 (1.0) 52.1580 (1.0) 18.2453 (1.0) 2.2340 (1.0) 17.9600 (1.0) 0.3190 (1.14) 35;91 54,808.6960 (1.0) 1870 1 -test_subtract_metabolite_benchmark[gurobi] 17.2800 (1.00) 64.3170 (1.23) 18.4417 (1.01) 2.6459 (1.18) 18.0791 (1.01) 0.3210 (1.14) 38;83 54,224.9516 (0.99) 1603 1 -test_subtract_metabolite_benchmark[glpk] 17.3590 (1.01) 52.6380 (1.01) 18.3193 (1.00) 2.2380 (1.00) 18.0000 (1.00) 0.2810 (1.0) 40;122 54,587.2597 (1.00) 1858 1 -test_achr_sample_benchmark 682.8951 (39.61) 1,102.4399 (21.14) 810.9441 (44.45) 71.8623 (32.17) 801.8110 (44.64) 101.6360 (361.66) 114;9 1,233.1306 (0.02) 429 1 -test_change_objective_benchmark[optlang-glpk] 782.6521 (45.40) 2,424.4710 (46.48) 816.4615 (44.75) 46.4639 (20.80) 806.1701 (44.89) 47.8282 (170.19) 38;2 1,224.7974 (0.02) 1715 1 -test_optgp_sample_benchmark 969.0051 (56.21) 1,594.6230 (30.57) 1,211.8989 (66.42) 127.0737 (56.88) 1,196.9970 (66.65) 192.9822 (686.70) 247;1 825.1513 (0.02) 671 1 -test_loopless_benchmark_after 3,506.2729 (203.39) 3,989.9350 (76.50) 3,637.9397 (199.39) 86.6444 (38.78) 3,613.3290 (201.19) 72.9380 (259.54) 29;9 274.8809 (0.01) 104 1 -test_loopless_benchmark_before 19,835.2811 (>1000.0) 22,979.6870 (440.58) 20,782.9976 (>1000.0) 958.1916 (428.90) 20,482.6970 (>1000.0) 1,179.6971 (>1000.0) 7;1 48.1163 (0.00) 32 1 -test_minimal_medium_mip_benchmark 22,120.4770 (>1000.0) 23,882.4140 (457.89) 23,154.7509 (>1000.0) 501.5072 (224.48) 23,234.2175 (>1000.0) 816.9709 (>1000.0) 9;0 43.1877 (0.00) 26 1 -test_minimal_medium_linear_benchmark 22,483.0640 (>1000.0) 26,902.4239 (515.79) 23,668.4048 (>1000.0) 1,066.9795 (477.60) 23,346.8330 (>1000.0) 738.9130 (>1000.0) 3;2 42.2504 (0.00) 24 1 -test_copy_benchmark[optlang-glpk] 57,258.0950 (>1000.0) 168,008.5040 (>1000.0) 74,325.2540 (>1000.0) 30,548.3850 (>1000.0) 62,949.8455 (>1000.0) 14,863.7340 (>1000.0) 1;1 13.4544 (0.00) 12 1 -test_single_reaction_deletion_benchmark[glpk] 66,778.9039 (>1000.0) 67,508.8380 (>1000.0) 67,148.8189 (>1000.0) 214.3872 (95.96) 67,159.4910 (>1000.0) 300.4289 (>1000.0) 6;0 14.8923 (0.00) 15 1 -test_deepcopy_benchmark 88,586.6239 (>1000.0) 93,173.5351 (>1000.0) 91,018.5157 (>1000.0) 1,816.7869 (813.23) 91,861.2230 (>1000.0) 3,482.7511 (>1000.0) 6;0 10.9868 (0.00) 11 1 -test_gpr_equality_benchmark 106,725.5561 (>1000.0) 107,652.8820 (>1000.0) 107,091.2982 (>1000.0) 280.1305 (125.39) 107,048.2240 (>1000.0) 262.3298 (933.47) 3;1 9.3378 (0.00) 9 1 -test_single_gene_deletion_fba_benchmark[glpk] 139,836.6591 (>1000.0) 159,885.7220 (>1000.0) 147,071.5300 (>1000.0) 7,925.0571 (>1000.0) 142,169.2930 (>1000.0) 12,643.8755 (>1000.0) 2;0 6.7994 (0.00) 7 1 -test_fastcc_benchmark[glpk] 214,957.5370 (>1000.0) 221,868.2830 (>1000.0) 217,867.8058 (>1000.0) 3,545.4990 (>1000.0) 215,524.7959 (>1000.0) 6,415.5547 (>1000.0) 2;0 4.5899 (0.00) 5 1 -test_add_metabolite_benchmark[gurobi] 284,009.4391 (>1000.0) 289,214.4080 (>1000.0) 285,675.6978 (>1000.0) 2,230.9790 (998.63) 284,301.8280 (>1000.0) 3,010.9692 (>1000.0) 1;0 3.5005 (0.00) 5 1 -test_add_metabolite_benchmark[glpk] 284,770.3311 (>1000.0) 296,747.0509 (>1000.0) 289,104.9638 (>1000.0) 4,860.7309 (>1000.0) 286,578.7850 (>1000.0) 6,452.2425 (>1000.0) 1;0 3.4590 (0.00) 5 1 -test_add_metabolite_benchmark[cplex] 293,155.7820 (>1000.0) 297,966.6049 (>1000.0) 294,843.7522 (>1000.0) 2,052.8664 (918.90) 294,046.9100 (>1000.0) 3,163.3737 (>1000.0) 1;0 3.3916 (0.00) 5 1 -test_optgp_init_benchmark 298,183.3441 (>1000.0) 312,271.8331 (>1000.0) 306,640.7174 (>1000.0) 5,711.8060 (>1000.0) 307,028.0640 (>1000.0) 8,733.2032 (>1000.0) 1;0 3.2611 (0.00) 5 1 -test_achr_init_benchmark 302,382.1920 (>1000.0) 311,350.1860 (>1000.0) 307,484.7988 (>1000.0) 4,442.6584 (>1000.0) 310,131.2710 (>1000.0) 8,048.9777 (>1000.0) 2;0 3.2522 (0.00) 5 1 -test_flux_variability_loopless_benchmark[glpk] 469,346.9841 (>1000.0) 512,493.1160 (>1000.0) 493,229.9066 (>1000.0) 18,948.1522 (>1000.0) 493,526.7350 (>1000.0) 34,150.7579 (>1000.0) 2;0 2.0275 (0.00) 5 1 -test_double_gene_deletion_benchmark 588,164.9940 (>1000.0) 624,185.1280 (>1000.0) 610,346.7096 (>1000.0) 15,595.1486 (>1000.0) 618,696.2470 (>1000.0) 24,722.4827 (>1000.0) 1;0 1.6384 (0.00) 5 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 676,461.4901 (>1000.0) 1,768,240.1501 (>1000.0) 897,476.3722 (>1000.0) 486,776.8697 (>1000.0) 680,403.4651 (>1000.0) 275,279.5695 (>1000.0) 1;1 1.1142 (0.00) 5 1 -test_double_reaction_deletion_benchmark 800,330.6601 (>1000.0) 832,404.0170 (>1000.0) 817,478.1100 (>1000.0) 13,289.1476 (>1000.0) 812,796.4870 (>1000.0) 20,739.3472 (>1000.0) 2;0 1.2233 (0.00) 5 1 -test_gpr_symbolism_benchmark 808,700.8690 (>1000.0) 1,129,018.8930 (>1000.0) 874,538.0166 (>1000.0) 142,271.5256 (>1000.0) 812,138.9430 (>1000.0) 82,925.6810 (>1000.0) 1;1 1.1435 (0.00) 5 1 -test_pfba_benchmark[glpk] 871,496.3971 (>1000.0) 881,370.6749 (>1000.0) 877,397.2126 (>1000.0) 3,771.0454 (>1000.0) 878,652.0950 (>1000.0) 4,712.1270 (>1000.0) 2;0 1.1397 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 1,005,844.3000 (>1000.0) 1,015,324.7509 (>1000.0) 1,010,045.4974 (>1000.0) 4,307.9805 (>1000.0) 1,007,751.7100 (>1000.0) 7,425.1067 (>1000.0) 1;0 0.9901 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 1,020,413.7220 (>1000.0) 1,031,537.6730 (>1000.0) 1,025,128.7326 (>1000.0) 4,148.1635 (>1000.0) 1,024,903.9171 (>1000.0) 5,004.2060 (>1000.0) 2;0 0.9755 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 1,190,898.7369 (>1000.0) 1,695,389.3891 (>1000.0) 1,385,364.0192 (>1000.0) 264,158.2542 (>1000.0) 1,196,090.9860 (>1000.0) 472,497.2780 (>1000.0) 2;0 0.7218 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 1,375,815.9770 (>1000.0) 1,392,207.0140 (>1000.0) 1,384,914.8822 (>1000.0) 7,313.0206 (>1000.0) 1,387,078.8420 (>1000.0) 13,173.0263 (>1000.0) 1;0 0.7221 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------- +Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +test_subtract_metabolite_benchmark[cplex] 21.0179 (1.0) 178.6230 (1.0) 25.0264 (1.0) 7.0476 (1.0) 22.5779 (1.0) 4.3791 (1.10) 68;55 39,957.7629 (1.0) 1190 1 +test_subtract_metabolite_benchmark[glpk] 21.1580 (1.01) 187.5630 (1.05) 25.2392 (1.01) 7.9391 (1.13) 23.3168 (1.03) 3.9848 (1.0) 52;77 39,620.9229 (0.99) 977 1 +test_subtract_metabolite_benchmark[gurobi] 21.6381 (1.03) 243.4570 (1.36) 29.0837 (1.16) 9.0489 (1.28) 27.9970 (1.24) 3.9950 (1.00) 34;47 34,383.5370 (0.86) 1179 1 +test_achr_sample_benchmark 1,210.1871 (57.58) 5,754.2610 (32.21) 1,361.6875 (54.41) 254.5782 (36.12) 1,321.7459 (58.54) 111.2894 (27.93) 14;17 734.3829 (0.02) 360 1 +test_change_objective_benchmark[optlang-glpk] 1,260.6808 (59.98) 16,549.3069 (92.65) 1,685.3492 (67.34) 888.4218 (126.06) 1,540.9160 (68.25) 228.6182 (57.37) 21;64 593.3488 (0.01) 793 1 +test_optgp_sample_benchmark 1,521.0179 (72.37) 10,137.8099 (56.76) 1,820.3896 (72.74) 519.0330 (73.65) 1,747.6559 (77.41) 206.7408 (51.88) 12;19 549.3329 (0.01) 476 1 +test_loopless_benchmark_after 5,344.1790 (254.27) 7,669.8011 (42.94) 6,546.2456 (261.57) 584.1033 (82.88) 6,448.5749 (285.61) 679.8659 (170.62) 28;0 152.7593 (0.00) 80 1 +test_loopless_benchmark_before 28,421.2749 (>1000.0) 38,540.4881 (215.76) 32,934.4338 (>1000.0) 3,453.5319 (490.03) 34,957.6829 (>1000.0) 6,860.4724 (>1000.0) 7;0 30.3634 (0.00) 19 1 +test_minimal_medium_linear_benchmark 34,350.7410 (>1000.0) 87,997.8549 (492.65) 45,777.8720 (>1000.0) 15,661.5812 (>1000.0) 40,585.3175 (>1000.0) 5,417.1719 (>1000.0) 2;3 21.8446 (0.00) 18 1 +test_minimal_medium_mip_benchmark 36,039.4830 (>1000.0) 89,103.5520 (498.84) 43,010.4272 (>1000.0) 14,537.8012 (>1000.0) 37,769.6611 (>1000.0) 3,790.7443 (951.31) 1;2 23.2502 (0.00) 13 1 +test_copy_benchmark[optlang-glpk] 90,718.3259 (>1000.0) 143,417.7998 (802.91) 110,282.5978 (>1000.0) 14,471.5094 (>1000.0) 106,820.4645 (>1000.0) 12,645.4527 (>1000.0) 2;1 9.0676 (0.00) 10 1 +test_single_reaction_deletion_benchmark[glpk] 122,778.3598 (>1000.0) 137,032.5631 (767.16) 130,117.5615 (>1000.0) 5,077.2324 (720.42) 129,933.9990 (>1000.0) 8,679.1655 (>1000.0) 3;0 7.6854 (0.00) 8 1 +test_gpr_equality_benchmark 157,787.3100 (>1000.0) 176,631.8020 (988.85) 162,578.9007 (>1000.0) 7,152.4392 (>1000.0) 160,242.8100 (>1000.0) 4,893.7001 (>1000.0) 1;1 6.1509 (0.00) 6 1 +test_single_gene_deletion_fba_benchmark[glpk] 191,701.9109 (>1000.0) 236,988.4818 (>1000.0) 213,802.5536 (>1000.0) 19,106.0348 (>1000.0) 218,777.0109 (>1000.0) 32,295.6747 (>1000.0) 2;0 4.6772 (0.00) 5 1 +test_deepcopy_benchmark 356,927.7450 (>1000.0) 875,152.3539 (>1000.0) 603,284.7864 (>1000.0) 208,333.3166 (>1000.0) 604,906.2340 (>1000.0) 338,041.6268 (>1000.0) 2;0 1.6576 (0.00) 5 1 +test_add_metabolite_benchmark[glpk] 383,163.2670 (>1000.0) 442,541.8330 (>1000.0) 397,041.7206 (>1000.0) 25,595.8520 (>1000.0) 385,295.8069 (>1000.0) 19,845.4870 (>1000.0) 1;1 2.5186 (0.00) 5 1 +test_fastcc_benchmark[glpk] 401,534.8861 (>1000.0) 916,480.2120 (>1000.0) 530,856.9089 (>1000.0) 217,307.8639 (>1000.0) 454,353.4711 (>1000.0) 169,054.0494 (>1000.0) 1;1 1.8837 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 423,566.6168 (>1000.0) 459,898.3699 (>1000.0) 441,889.7748 (>1000.0) 14,076.0111 (>1000.0) 441,673.8390 (>1000.0) 21,282.9003 (>1000.0) 2;0 2.2630 (0.00) 5 1 +test_add_metabolite_benchmark[cplex] 426,055.8621 (>1000.0) 487,364.4460 (>1000.0) 460,773.7229 (>1000.0) 22,270.9940 (>1000.0) 462,951.3791 (>1000.0) 22,763.2693 (>1000.0) 2;0 2.1703 (0.00) 5 1 +test_add_metabolite_benchmark[gurobi] 427,895.9101 (>1000.0) 450,015.8129 (>1000.0) 438,973.3936 (>1000.0) 7,952.3288 (>1000.0) 439,306.3381 (>1000.0) 8,559.3165 (>1000.0) 2;0 2.2780 (0.00) 5 1 +test_achr_init_benchmark 539,127.7291 (>1000.0) 950,153.3199 (>1000.0) 723,457.0636 (>1000.0) 183,098.0054 (>1000.0) 708,121.3170 (>1000.0) 335,451.0617 (>1000.0) 2;0 1.3823 (0.00) 5 1 +test_optgp_init_benchmark 616,542.7170 (>1000.0) 1,274,696.2381 (>1000.0) 827,788.7268 (>1000.0) 261,881.3878 (>1000.0) 752,951.2581 (>1000.0) 278,001.3256 (>1000.0) 1;0 1.2080 (0.00) 5 1 +test_gpr_symbolism_benchmark 1,223,159.1910 (>1000.0) 1,893,176.7440 (>1000.0) 1,386,332.4355 (>1000.0) 284,247.2594 (>1000.0) 1,275,821.8290 (>1000.0) 185,089.0817 (>1000.0) 1;1 0.7213 (0.00) 5 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 1,243,019.3839 (>1000.0) 1,303,798.3591 (>1000.0) 1,273,235.5318 (>1000.0) 27,907.3070 (>1000.0) 1,282,448.5830 (>1000.0) 50,968.9510 (>1000.0) 3;0 0.7854 (0.00) 5 1 +test_double_gene_deletion_benchmark 1,432,308.8829 (>1000.0) 1,647,012.0901 (>1000.0) 1,525,595.5508 (>1000.0) 89,104.0747 (>1000.0) 1,483,555.2562 (>1000.0) 138,856.9822 (>1000.0) 2;0 0.6555 (0.00) 5 1 +test_pfba_benchmark[glpk] 1,538,810.9079 (>1000.0) 1,689,932.2311 (>1000.0) 1,606,445.9064 (>1000.0) 57,788.0958 (>1000.0) 1,610,656.6659 (>1000.0) 80,132.7250 (>1000.0) 2;0 0.6225 (0.00) 5 1 +test_double_reaction_deletion_benchmark 1,605,013.7558 (>1000.0) 2,387,281.9568 (>1000.0) 1,880,063.1618 (>1000.0) 337,324.2640 (>1000.0) 1,708,606.7840 (>1000.0) 515,505.5348 (>1000.0) 1;0 0.5319 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 1,694,962.3469 (>1000.0) 2,231,040.2689 (>1000.0) 1,877,530.4312 (>1000.0) 209,207.6994 (>1000.0) 1,831,697.3550 (>1000.0) 221,768.6712 (>1000.0) 1;0 0.5326 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 1,822,750.9561 (>1000.0) 2,888,194.7161 (>1000.0) 2,474,312.2922 (>1000.0) 562,346.3335 (>1000.0) 2,877,606.5060 (>1000.0) 1,010,897.7847 (>1000.0) 2;0 0.4042 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 2,481,647.8719 (>1000.0) 2,703,897.7691 (>1000.0) 2,554,878.6715 (>1000.0) 90,820.4793 (>1000.0) 2,542,677.8651 (>1000.0) 116,061.5131 (>1000.0) 1;0 0.3914 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 2,485,179.4492 (>1000.0) 3,185,217.1039 (>1000.0) 2,704,037.4989 (>1000.0) 275,486.6639 (>1000.0) 2,626,181.0781 (>1000.0) 209,601.1591 (>1000.0) 1;1 0.3698 (0.00) 5 1 +----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 509 passed, 31 skipped, 11 xfailed, 170 warnings in 282.22s (0:04:42) ===== +==== 509 passed, 31 skipped, 11 xfailed, 170 warnings in 771.44s (0:12:51) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1661,238 +1697,238 @@ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11 creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/metabolite.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/formula.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/configuration.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/singleton.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/solution.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/dictlist.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/model.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/gene.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/species.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/group.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/__pycache__/object.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/load.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/yaml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/json.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/sbml.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/dict.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/io/__pycache__/mat.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__pycache__ creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/array.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/context.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/process_pool.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/util/__pycache__/solver.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/modify.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/delete.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/manipulation/__pycache__/validate.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/model_summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/annotations.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/optgp.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/sampling.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/achr.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/__pycache__/core.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/__pycache__/exceptions.cpython-311.pyc -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__pycache__ -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc +copying /build/reproducible-path/python-cobra-0.29.0/.pybuild/cpython3_3.11_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling +creating /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/.benchmarks +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/model.py to model.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/solution.py to solution.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/gene.py to gene.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/object.py to object.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/configuration.py to configuration.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/group.py to group.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/reaction.py to reaction.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/singleton.py to singleton.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/formula.py to formula.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/dictlist.py to dictlist.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/species.py to species.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/core/metabolite.py to metabolite.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/data/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/load.py to load.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/yaml.py to yaml.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/json.py to json.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/dict.py to dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/sbml.py to sbml.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/io/mat.py to mat.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/process_pool.py to process_pool.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/solver.py to solver.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/util.py to util.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/array.py to array.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/context.py to context.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/util/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/validate.py to validate.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/delete.py to delete.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/modify.py to modify.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/room.py to room.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/summary.py to summary.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/medium/annotations.py to annotations.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/core.py to core.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-311.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/exceptions.py to exceptions.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/sampling.py to sampling.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/optgp.py to optgp.cpython-311.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.0/debian/python3-cobra/usr/lib/python3.11/dist-packages/cobra/sampling/achr.py to achr.cpython-311.pyc running install_egg_info running egg_info creating src/cobra.egg-info @@ -1944,12 +1980,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11906/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/30488 and its subdirectories -I: Current time: Sun Apr 28 13:58:12 -12 2024 -I: pbuilder-time-stamp: 1714355892 +I: removing directory /srv/workspace/pbuilder/11906 and its subdirectories +I: Current time: Mon Apr 29 16:19:32 +14 2024 +I: pbuilder-time-stamp: 1714357172