I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 8 07:58:06 +14 2024 I: pbuilder-time-stamp: 1717783086 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macs_2.2.7.1-6.dsc] I: copying [./macs_2.2.7.1.orig.tar.gz] I: copying [./macs_2.2.7.1-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 25 01:32:00 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macs_2.2.7.1-6.dsc: no acceptable signature found dpkg-source: info: extracting macs in macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch dpkg-source: info: applying enable_python3.10.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 8 07:58 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=1e8d0d68ce5c4cdebc5fb38b92568b71 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1260231 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4YtdxW6x/pbuilderrc_q8M9 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4YtdxW6x/b2 --logfile b2/build.log --extrapackages usrmerge macs_2.2.7.1-6.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.15-1~bpo11+1 (2023-03-16) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 24 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 2023 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 2023 more -rwsr-xr-x 1 root root 59704 Mar 24 2023 mount -rwxr-xr-x 1 root root 18744 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 8 07:58 sh -> /bin/bash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 2023 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 2023 tar -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 2023 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc python3-pygments wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 200 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 cython3 amd64 0.29.32-2+b1 [1302 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 64 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 68 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 70 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 python3-wheel all 0.38.4-2 [30.8 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 python3-pip all 23.0.1+dfsg-1 [1325 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Fetched 48.7 MB in 1s (37.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. 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Selecting previously unselected package libelf1:amd64. Preparing to unpack .../28-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../29-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../30-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../31-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../32-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../33-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. 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Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../58-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../59-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../60-python3-numpy_1%3a1.24.2-1_amd64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../61-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../62-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../63-python3-wheel_0.38.4-2_all.deb ... Unpacking python3-wheel (0.38.4-2) ... Selecting previously unselected package python3-pip. Preparing to unpack .../64-python3-pip_23.0.1+dfsg-1_all.deb ... Unpacking python3-pip (23.0.1+dfsg-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../65-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../66-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../67-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-wheel (0.38.4-2) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-pip (23.0.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/macs-2.2.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../macs_2.2.7.1-6_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-6* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 creating /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-x86_64-cpython-311 creating build/temp.linux-x86_64-cpython-311/MACS2 x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Prob.c -o build/temp.linux-x86_64-cpython-311/MACS2/Prob.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/Prob.o -L/usr/lib/x86_64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-x86_64-cpython-311/MACS2/IO x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/Parser.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/Parser.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/Parser.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-x86_64-linux-gnu.so building 'MACS2.Pileup' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Pileup.c -o build/temp.linux-x86_64-cpython-311/MACS2/Pileup.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/cPosValCalculation.c -o build/temp.linux-x86_64-cpython-311/MACS2/cPosValCalculation.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/Pileup.o build/temp.linux-x86_64-cpython-311/MACS2/cPosValCalculation.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-x86_64-linux-gnu.so building 'MACS2.PeakModel' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/PeakModel.c -o build/temp.linux-x86_64-cpython-311/MACS2/PeakModel.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/PeakModel.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-x86_64-linux-gnu.so building 'MACS2.PeakDetect' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/PeakDetect.c -o build/temp.linux-x86_64-cpython-311/MACS2/PeakDetect.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/PeakDetect.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-x86_64-linux-gnu.so building 'MACS2.Signal' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/Signal.c -o build/temp.linux-x86_64-cpython-311/MACS2/Signal.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/Signal.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.PeakIO' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/PeakIO.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/PeakIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/PeakIO.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/BedGraphIO.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/FixWidthTrack.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/PairedEndTrack.o -L/usr/lib/x86_64-linux-gnu -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.BedGraph' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS2/IO/BedGraph.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/BedGraph.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/BedGraph.o -L/usr/lib/x86_64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/ScoreTrack.o -L/usr/lib/x86_64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-x86_64-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-x86_64-cpython-311/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-311/MACS2/IO/CallPeakUnit.o -L/usr/lib/x86_64-linux-gnu -lm -o /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs2 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/macs-2.2.7.1' dh_auto_test I: pybuild base:240: cd /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ======================== 41 passed, 1 skipped in 1.09s ========================= cd test && for PY3VER in 3.11; do \ export PATH=/build/macs-2.2.7.1/build/scripts-${PY3VER}:$PATH \ && export PYTHONPATH=/build/macs-2.2.7.1/.pybuild/cpython3_${PY3VER}_MACS2/build \ && ./cmdlinetest macs2.2.7.1-6-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. 50k contigs with buffersize 13.1 callpeak 13.2 filterdup 13.3 pileup 13.4 randsample 14. search for errors or warnings in log files checking macs2.2.7.1-6-3.11_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.7.1-6-3.11_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.7.1-6-3.11_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-6-3.11_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgopt/run_bdgopt_max.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgopt/run_bdgopt_min.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.7.1-6-3.11_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.7.1-6-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.7.1-6-3.11_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.7.1-6-3.11_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.7.1-6-3.11_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.7.1-6-3.11_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.7.1-6-3.11_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.7.1-6-3.11_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.7.1-6-3.11_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.7.1-6-3.11_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.7.1-6-3.11_run_predictd/run_predictd.log... ... clear! checking macs2.2.7.1-6-3.11_run_randsample/run_randsample.log... ... clear! checking macs2.2.7.1-6-3.11_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.7.1-6-3.11_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.7.1-6-3.11_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.7.1-6-3.11_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 15. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... success! 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... success! 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... success! 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... success! 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... success! 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... success! 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... success! 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... success! 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! 14.15.1 checking bdgopt run_bdgopt_max.bdg ... ... success! 14.15.2 checking bdgopt run_bdgopt_min.bdg ... ... success! 16. brief speed test CPU time (mm:ss): 00:02:16 Max mem (KB): 267724 make[1]: Leaving directory '/build/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/macs-2.2.7.1/debian/macs running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/macs-2.2.7.1/debian/macs/usr creating /build/macs-2.2.7.1/debian/macs/usr/lib creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/OptValidator.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/Constants.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__pycache__/__init__.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Signal.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakDetect.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/PeakModel.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Pileup.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Prob.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/khash.pxd -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO creating /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-311.pyc -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__pycache__ copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/CallPeakUnit.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/ScoreTrack.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraph.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PairedEndTrack.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/FixWidthTrack.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/BedGraphIO.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/PeakIO.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/Parser.cpython-311-x86_64-linux-gnu.so -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/IO/__init__.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/Constants.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/OptValidator.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/OutputWriter.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/__init__.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgopt_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/callpeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/cmbreps_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/diffpeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/filterdup_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/pileup_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/predictd_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/randsample_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 copying /build/macs-2.2.7.1/.pybuild/cpython3_3.11_MACS2/build/MACS2/refinepeak_cmd.py -> /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2 byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/IO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/Constants.py to Constants.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/__init__.py to __init__.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-311.pyc byte-compiling /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-311.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' adding license file 'LICENSE' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/macs-2.2.7.1/debian/macs/usr/lib/python3.11/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.11/macs2 -> /build/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/PeakIO.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 819723 new size 820559 dwz: debian/macs/usr/lib/python3/dist-packages/MACS2/IO/Parser.cpython-311-x86_64-linux-gnu.so: DWARF compression not beneficial - old size 822862 new size 824717 dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-6_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_2.2.7.1-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../macs_2.2.7.1-6_amd64.buildinfo dpkg-genchanges --build=binary -O../macs_2.2.7.1-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1260231/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1260231 and its subdirectories I: Current time: Sat Jun 8 08:37:15 +14 2024 I: pbuilder-time-stamp: 1717785435