I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 15 14:20:59 +14 2023 I: pbuilder-time-stamp: 1681518059 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc] I: copying [./seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz] I: copying [./seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 2 02:01:05 2022 +14 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting seqan-raptor in seqan-raptor-2.0.0.0.git.fecfbca+ds dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds.orig.tar.xz dpkg-source: info: unpacking seqan-raptor_2.0.0.0.git.fecfbca+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying privacy dpkg-source: info: applying chopper_no_test dpkg-source: info: applying chopper_no_ccache dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying debian_gtest dpkg-source: info: applying debian_xxhash I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/837095/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/837095/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/837095/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME='pbuilder2' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4f6db6ce9ed84785bb7240ff15e233fe' LANG='C' LANGUAGE='et_EE:et' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='837095' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fLFki9az/pbuilderrc_WXjl --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fLFki9az/b2 --logfile b2/build.log --extrapackages usrmerge seqan-raptor_2.0.0.0.git.fecfbca+ds-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash -rwxr-xr-x 1 root root 121904 Sep 21 2022 date -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd -rwxr-xr-x 1 root root 102200 Sep 21 2022 df -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep -rwxr-xr-x 1 root root 35664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed lrwxrwxrwx 1 root root 4 Jan 6 03:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch -rwxr-xr-x 1 root root 35664 Sep 21 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/837095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, pkg-config, doxygen, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} googletest{a} groff-base{a} intltool-debian{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcereal-dev{a} libclang-cpp14{a} libclang1-14{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libglib2.0-0{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgtest-dev{a} libharfbuzz0b{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp25{a} libkpathsea6{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libsimde-dev{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libtiff6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash-dev{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-font-utils{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl dbus default-jre dvisvgm fonts-droid-fallback libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx ps2eps psmisc publicsuffix ruby shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 159 newly installed, 0 to remove and 0 not upgraded. Need to get 247 MB of archives. After unpacking 898 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 12 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-8 [386 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libllvm14 amd64 1:14.0.6-12 [21.8 MB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libclang-cpp14 amd64 1:14.0.6-12 [11.1 MB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libclang1-14 amd64 1:14.0.6-12 [6157 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 doxygen amd64 1.9.4-4 [4611 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libavahi-common-data amd64 0.8-9 [107 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libavahi-common3 amd64 0.8-9 [41.3 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libdbus-1-3 amd64 1.14.6-1 [200 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libavahi-client3 amd64 0.8-9 [45.1 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libcups2 amd64 2.4.2-3 [244 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libidn12 amd64 1.41-1 [83.8 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libijs-0.35 amd64 0.35-15 [16.4 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libjbig2dec0 amd64 0.19-3 [67.2 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libxt6 amd64 1:1.2.1-1.1 [186 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 libgs10 amd64 10.0.0~dfsg-11 [2465 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 ghostscript amd64 10.0.0~dfsg-11 [56.6 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 googletest all 1.12.1-0.2 [506 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libcereal-dev amd64 1.3.2+dfsg-4 [221 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-1 [1397 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libgtest-dev amd64 1.12.1-0.2 [240 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libkpathsea6 amd64 2022.20220321.62855-5 [152 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libptexenc1 amd64 2022.20220321.62855-5 [43.5 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libseqan3-dev all 3.2.0+ds-6 [752 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libsynctex2 amd64 2022.20220321.62855-5 [59.6 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5 [111 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 libtexluajit2 amd64 2022.20220321.62855-5 [246 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libxxhash-dev amd64 0.8.1-1 [66.1 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 tex-common all 6.18 [32.5 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 preview-latex-style all 12.2-1 [201 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 texlive-binaries amd64 2022.20220321.62855-5 [10.5 MB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 texlive-base all 2022.20230122-3 [21.9 MB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 texlive-font-utils all 2022.20230122-3 [4130 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 texlive-latex-extra all 2022.20230122-3 [19.2 MB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 texlive-plain-generic all 2022.20230122-3 [28.9 MB] Fetched 247 MB in 8s (32.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package poppler-data. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20446 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20880 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../005-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../019-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../020-libxml2_2.9.14+dfsg-1.1+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../021-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../022-libbrotli1_1.0.9-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../023-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../024-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../025-libldap-2.5-0_2.5.13+dfsg-5_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../026-libnghttp2-14_1.52.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.52.0-1) ... Selecting previously unselected package libpsl5:amd64. 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No schema files found: doing nothing. Setting up libijs-0.35:amd64 (0.35-15) ... Setting up libtexluajit2:amd64 (2022.20220321.62855-5) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libgs-common (10.0.0~dfsg-11) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libfontbox-java (1:1.8.16-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libzzip-0-13:amd64 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.44-3) ... Setting up googletest (1.12.1-0.2) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... Setting up poppler-data (0.4.12-1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... 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Setting up pkgconf-bin (1.8.1-1) ... Setting up libkpathsea6:amd64 (2022.20220321.62855-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up libxxhash-dev:amd64 (0.8.1-1) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libtiff6:amd64 (4.5.0-5) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:amd64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:amd64 (2022.20220321.62855-5) ... Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libgtest-dev:amd64 (1.12.1-0.2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... 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Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libxpm4:amd64 (1:3.5.12-1.1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libseqan3-dev (3.2.0+ds-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up libpaper-utils (1.1.29) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up libxt6:amd64 (1:1.2.1-1.1) ... Setting up libcups2:amd64 (2.4.2-3) ... Setting up cmake (3.25.1-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up doxygen (1.9.4-4) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgs10-common (10.0.0~dfsg-11) ... Setting up texlive-plain-generic (2022.20230122-3) ... Setting up texlive-font-utils (2022.20230122-3) ... Setting up texlive-latex-base (2022.20230122-3) ... Setting up texlive-latex-recommended (2022.20230122-3) ... Setting up texlive-pictures (2022.20230122-3) ... Setting up texlive-fonts-recommended (2022.20230122-3) ... Setting up libgs10:amd64 (10.0.0~dfsg-11) ... Setting up texlive-latex-extra (2022.20230122-3) ... Setting up ghostscript (10.0.0~dfsg-11) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/837095/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/837095/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 2.0.0.0.git.fecfbca+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Native build disabled. Detecting popcnt support. -- Performing Test RAPTOR_HAS_POPCNT -- Performing Test RAPTOR_HAS_POPCNT - Success -- Performing Test RAPTOR_HAS_OPENMP -- Performing Test RAPTOR_HAS_OPENMP - Success -- Performing Test RAPTOR_HAS_OPENMP_SIMD -- Performing Test RAPTOR_HAS_OPENMP_SIMD - Success -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI -- Performing Test RAPTOR_SUPPRESS_GCC4_ABI - Success -- Finding program ccache -- Finding program ccache - Failed -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Use googletest as external project. -- You can run `make test` to build and run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_build --arch cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 2%] Creating directories for 'chopper_project' /usr/bin/cmake -Dcfgdir= -P /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/tmp/chopper_project-mkdirs.cmake /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-mkdir [ 4%] No download step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-download [ 6%] No patch step for 'chopper_project' /usr/bin/cmake -E echo_append /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-patch [ 8%] Performing configure step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DCHOPPER_SUBMODULES_DIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib -DCHOPPER_USE_CCACHE=OFF -DSEQAN3_SUBMODULES_DIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib -DCMAKE_INSTALL_LIBDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib -DCMAKE_INSTALL_BINDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin "-GUnix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CHOPPER_HAS_OPENMP -- Performing Test CHOPPER_HAS_OPENMP - Success -- Performing Test CHOPPER_HAS_OPENMP_SIMD -- Performing Test CHOPPER_HAS_OPENMP_SIMD - Success -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI -- Performing Test CHOPPER_SUPPRESS_GCC4_ABI - Success -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- Configuring done -- Generating done -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-configure [ 10%] Performing build step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && make make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 12%] Building CXX object src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper_layout.cpp [ 25%] Building CXX object src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -MF CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d -o CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper_count.cpp make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 37%] Building CXX object src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -MF CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d -o CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/measure_hyperloglog.cpp [ 62%] Linking CXX static library ../lib/libchopper_count_lib.a [ 62%] Linking CXX static library ../lib/libchopper_layout_lib.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_count_lib.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_count_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ar qc ../lib/libchopper_count_lib.a CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o /usr/bin/ranlib ../lib/libchopper_count_lib.a /usr/bin/ranlib ../lib/libchopper_layout_lib.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 62%] Built target chopper_count_lib make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 62%] Built target chopper_layout_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 75%] Building CXX object src/CMakeFiles/chopper.dir/chopper.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/../include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/lemon/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/simde/simde -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src/chopper.cpp [ 87%] Linking CXX executable ../bin/measure_hyperloglog cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/measure_hyperloglog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o -o ../bin/measure_hyperloglog /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 87%] Built target measure_hyperloglog [100%] Linking CXX executable ../bin/chopper cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/chopper.dir/chopper.cpp.o -o ../bin/chopper ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libxxhash.a make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-build [ 12%] Performing install step for 'chopper_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && make install make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake --color= make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f CMakeFiles/xxhash_project.dir/build.make CMakeFiles/xxhash_project.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'CMakeFiles/xxhash_project.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 0%] Built target xxhash_project make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/depend make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/DependInfo.cmake --color= make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake --color= make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/chopper_count_lib.dir/chopper_count.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_count_lib.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper_count_lib make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_count_lib.dir/build.make src/CMakeFiles/chopper_count_lib.dir/build Dependencies file "src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/compiler_depend.internal". Dependencies file "src/CMakeFiles/measure_hyperloglog.dir/measure_hyperloglog.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/measure_hyperloglog.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper_layout_lib make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper_count_lib.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper_layout_lib.dir/build.make src/CMakeFiles/chopper_layout_lib.dir/build Consolidate compiler generated dependencies of target measure_hyperloglog make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/measure_hyperloglog.dir/build.make src/CMakeFiles/measure_hyperloglog.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper_layout_lib.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/measure_hyperloglog.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [ 25%] Built target chopper_count_lib [ 50%] Built target chopper_layout_lib make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/depend make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake --color= [ 75%] Built target measure_hyperloglog Dependencies file "src/CMakeFiles/chopper.dir/chopper.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/src/CMakeFiles/chopper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target chopper make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make -f src/CMakeFiles/chopper.dir/build.make src/CMakeFiles/chopper.dir/build make[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[7]: Nothing to be done for 'src/CMakeFiles/chopper.dir/build'. make[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' [100%] Built target chopper make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' make[6]: Nothing to be done for 'preinstall'. make[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/libchopper_count_lib.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/libchopper_layout_lib.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/chopper make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-install [ 14%] Completed 'chopper_project' /usr/bin/cmake -E make_directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles/chopper_project-complete /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/chopper_project/src/chopper_project-stamp/chopper_project-done make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 14%] Built target chopper_project make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 16%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o [ 18%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build [ 20%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o [ 22%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp [ 24%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o [ 26%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp [ 30%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp [ 34%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o [ 28%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o [ 38%] Building CXX object src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp [ 40%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp [ 42%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o [ 44%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 46%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp [ 48%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp [ 51%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o -MF CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d -o CMakeFiles/raptor_search.dir/search_multiple.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:10: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:11, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp [ 55%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp [ 57%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp [ 59%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp [ 61%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/construct_ibf.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 65%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp [ 67%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp [ 69%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp:11: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 71%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp [ 73%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 73%] Built target raptor_upgrade [ 75%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp [ 77%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp [ 79%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/algorithm:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp:8: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 81%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp [ 83%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp [ 85%] Linking CXX static library ../../lib/libraptor_threshold.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 85%] Built target raptor_threshold [ 87%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o -MF CMakeFiles/raptor_search.dir/search_socks.cpp.o.d -o CMakeFiles/raptor_search.dir/search_socks.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/hierarchical_build.hpp:13, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp:8: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algobase.h:65, from /usr/include/c++/12/vector:60, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/core.h:45, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/read_chopper_pack_file.hpp:12, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp:12: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/update_user_bins.hpp:10, from /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp:10: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 22 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: the default value for the current CPU tuning is 64 bytes /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:22:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include/raptor/build/hibf/build_data.hpp:23:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 23 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 89%] Built target raptor_build_hibf [ 91%] Linking CXX static library ../../lib/libraptor_build.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o /usr/bin/ranlib ../../lib/libraptor_build.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 91%] Built target raptor_build [ 93%] Linking CXX static library ../../lib/libraptor_search.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_multiple.cpp.o CMakeFiles/raptor_search.dir/search_socks.cpp.o /usr/bin/ranlib ../../lib/libraptor_search.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 93%] Built target raptor_search [ 95%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o /usr/bin/ranlib ../../lib/libraptor_argument_parsing.a make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 95%] Built target raptor_argument_parsing make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp [100%] Linking CXX executable ../bin/raptor cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../lib/libchopper_count_lib.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target raptor make[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' obj-*/bin/raptor --export-help man > debian/raptor.1 obj-*/bin/raptor build --export-help man > debian/raptor-build.1 obj-*/bin/raptor search --export-help man > debian/raptor-search.1 obj-*/bin/raptor socks --export-help man > debian/raptor-socks.1 obj-*/bin/raptor socks build --export-help man > debian/raptor-socks-build.1 obj-*/bin/raptor socks lookup-kmer --export-help man > debian/raptor-socks-lookup-kmer.1 obj-*/bin/raptor upgrade --export-help man > debian/raptor-upgrade.1 make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' cd obj-* && /usr/bin/make doc && cd doc/latex && /usr/bin/make make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 doc make[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 1 /usr/bin/make -f CMakeFiles/Makefile2 doc/CMakeFiles/doc.dir/all make[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/depend make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/doc /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/doc /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/doc/CMakeFiles/doc.dir/DependInfo.cmake --color= make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/make -f doc/CMakeFiles/doc.dir/build.make doc/CMakeFiles/doc.dir/build make[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Generating (developer) API documentation with Doxygen. cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/doc && /usr/bin/doxygen Doxygen version used: 1.9.4 Searching for include files... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include Searching for example files... Searching for images... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/doc Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/search Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/build/hibf Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/argument_parsing Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf Searching for files in directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing Reading and parsing tag files Parsing files Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/adjust_seed.hpp... 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Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/precompute_threshold.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold_parameters.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/threshold/threshold_parameters.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade_index.hpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/include/raptor/upgrade/upgrade_index.hpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/build_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/init_shared_meta.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/parse_bin_path.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/search_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing/upgrade_parsing.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/build_from_minimiser.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/compute_minimiser.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/bin_size_in_bits.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/chopper_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/compute_kmers.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/construct_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/hierarchical_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/initialise_max_bin_kmers.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/insert_into_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/loop_over_children.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_header.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/parse_chopper_pack_line.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/read_chopper_pack_file.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf/update_user_bins.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/raptor_build.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/raptor.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/raptor_search.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_hibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_ibf.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_multiple.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search/search_socks.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/multiple_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/one_indirect_error_model.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/pascal_row.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_correction.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold/precompute_threshold.cpp... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/CMakeLists.txt... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/CMakeLists.txt... Preprocessing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp... Parsing file /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade/raptor_upgrade.cpp... Reading /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file include/raptor/adjust_seed.hpp... Generating code for file include/raptor/argument_parsing/build_arguments.hpp... Generating code for file include/raptor/argument_parsing/build_parsing.hpp... Generating code for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating code for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating code for file include/raptor/argument_parsing/search_arguments.hpp... Generating code for file include/raptor/argument_parsing/search_parsing.hpp... Generating code for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating code for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating code for file include/raptor/argument_parsing/validators.hpp... Generating code for file include/raptor/build/build_from_files.hpp... Generating code for file include/raptor/build/build_from_minimiser.hpp... Generating code for file include/raptor/build/call_parallel_on_bins.hpp... Generating code for file include/raptor/build/compute_minimiser.hpp... Generating code for file include/raptor/build/hibf/bin_prefixes.hpp... Generating code for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating code for file include/raptor/build/hibf/build_data.hpp... Generating code for file include/raptor/build/hibf/chopper_build.hpp... Generating code for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating code for file include/raptor/build/hibf/compute_kmers.hpp... Generating code for file include/raptor/build/hibf/construct_ibf.hpp... Generating code for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating code for file include/raptor/build/hibf/hierarchical_build.hpp... Generating code for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating code for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating code for file include/raptor/build/hibf/loop_over_children.hpp... Generating code for file include/raptor/build/hibf/node_data.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating code for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating code for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating code for file include/raptor/build/hibf/update_user_bins.hpp... Generating code for file include/raptor/build/index_factory.hpp... Generating code for file include/raptor/build/raptor_build.hpp... Generating code for file include/raptor/build/store_index.hpp... Generating code for file include/raptor/dna4_traits.hpp... Generating code for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating code for file include/raptor/index.hpp... Generating code for file include/raptor/raptor.hpp... Generating code for file include/raptor/search/do_parallel.hpp... Generating code for file include/raptor/search/load_index.hpp... Generating code for file include/raptor/search/search.hpp... Generating code for file include/raptor/search/search_hibf.hpp... Generating code for file include/raptor/search/search_ibf.hpp... Generating code for file include/raptor/search/search_multiple.hpp... Generating code for file include/raptor/search/search_single.hpp... Generating code for file include/raptor/search/search_socks.hpp... Generating code for file include/raptor/search/sync_out.hpp... Generating code for file include/raptor/strong_types.hpp... Generating code for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating code for file include/raptor/threshold/logspace.hpp... Generating code for file include/raptor/threshold/multiple_error_model.hpp... Generating code for file include/raptor/threshold/one_error_model.hpp... Generating code for file include/raptor/threshold/one_indirect_error_model.hpp... Generating code for file include/raptor/threshold/pascal_row.hpp... Generating code for file include/raptor/threshold/precompute_correction.hpp... Generating code for file include/raptor/threshold/precompute_threshold.hpp... Generating code for file include/raptor/threshold/threshold.hpp... Generating code for file include/raptor/threshold/threshold_parameters.hpp... Generating code for file include/raptor/upgrade/upgrade.hpp... Generating code for file include/raptor/upgrade/upgrade_index.hpp... Generating file documentation... Generating docs for file include/raptor/adjust_seed.hpp... Generating docs for file include/raptor/argument_parsing/build_arguments.hpp... Generating docs for file include/raptor/argument_parsing/build_parsing.hpp... Generating docs for file include/raptor/argument_parsing/init_shared_meta.hpp... Generating docs for file include/raptor/argument_parsing/parse_bin_path.hpp... Generating docs for file include/raptor/argument_parsing/search_arguments.hpp... Generating docs for file include/raptor/argument_parsing/search_parsing.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_arguments.hpp... Generating docs for file include/raptor/argument_parsing/upgrade_parsing.hpp... Generating docs for file include/raptor/argument_parsing/validators.hpp... Generating docs for file include/raptor/build/build_from_files.hpp... Generating docs for file include/raptor/build/build_from_minimiser.hpp... Generating docs for file include/raptor/build/call_parallel_on_bins.hpp... Generating docs for file include/raptor/build/compute_minimiser.hpp... Generating docs for file include/raptor/build/hibf/bin_prefixes.hpp... Generating docs for file include/raptor/build/hibf/bin_size_in_bits.hpp... Generating docs for file include/raptor/build/hibf/build_data.hpp... Generating docs for file include/raptor/build/hibf/chopper_build.hpp... Generating docs for file include/raptor/build/hibf/chopper_pack_record.hpp... Generating docs for file include/raptor/build/hibf/compute_kmers.hpp... Generating docs for file include/raptor/build/hibf/construct_ibf.hpp... Generating docs for file include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp... Generating docs for file include/raptor/build/hibf/hierarchical_build.hpp... Generating docs for file include/raptor/build/hibf/initialise_max_bin_kmers.hpp... Generating docs for file include/raptor/build/hibf/insert_into_ibf.hpp... Generating docs for file include/raptor/build/hibf/loop_over_children.hpp... Generating docs for file include/raptor/build/hibf/node_data.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_header.hpp... Generating docs for file include/raptor/build/hibf/parse_chopper_pack_line.hpp... Generating docs for file include/raptor/build/hibf/read_chopper_pack_file.hpp... Generating docs for file include/raptor/build/hibf/update_user_bins.hpp... Generating docs for file include/raptor/build/index_factory.hpp... Generating docs for file include/raptor/build/raptor_build.hpp... Generating docs for file include/raptor/build/store_index.hpp... Generating docs for file include/raptor/dna4_traits.hpp... Generating docs for file include/raptor/hierarchical_interleaved_bloom_filter.hpp... Generating docs for file include/raptor/index.hpp... Generating docs for file include/raptor/raptor.hpp... Generating docs for file include/raptor/search/do_parallel.hpp... Generating docs for file include/raptor/search/load_index.hpp... Generating docs for file include/raptor/search/search.hpp... Generating docs for file include/raptor/search/search_hibf.hpp... Generating docs for file include/raptor/search/search_ibf.hpp... Generating docs for file include/raptor/search/search_multiple.hpp... Generating docs for file include/raptor/search/search_single.hpp... Generating docs for file include/raptor/search/search_socks.hpp... Generating docs for file include/raptor/search/sync_out.hpp... Generating docs for file include/raptor/strong_types.hpp... Generating docs for file include/raptor/threshold/forward_strand_minimiser.hpp... Generating docs for file include/raptor/threshold/logspace.hpp... Generating docs for file include/raptor/threshold/multiple_error_model.hpp... Generating docs for file include/raptor/threshold/one_error_model.hpp... Generating docs for file include/raptor/threshold/one_indirect_error_model.hpp... Generating docs for file include/raptor/threshold/pascal_row.hpp... Generating docs for file include/raptor/threshold/precompute_correction.hpp... Generating docs for file include/raptor/threshold/precompute_threshold.hpp... Generating docs for file include/raptor/threshold/threshold.hpp... Generating docs for file include/raptor/threshold/threshold_parameters.hpp... Generating docs for file include/raptor/upgrade/upgrade.hpp... Generating docs for file include/raptor/upgrade/upgrade_index.hpp... Generating docs for file LICENSE.md... Generating docs for file src/argument_parsing/build_parsing.cpp... Generating docs for file src/argument_parsing/init_shared_meta.cpp... Generating docs for file src/argument_parsing/parse_bin_path.cpp... Generating docs for file src/argument_parsing/search_parsing.cpp... Generating docs for file src/argument_parsing/upgrade_parsing.cpp... Generating docs for file src/build/build_from_minimiser.cpp... Generating docs for file src/build/compute_minimiser.cpp... Generating docs for file src/build/hibf/bin_size_in_bits.cpp... Generating docs for file src/build/hibf/chopper_build.cpp... Generating docs for file src/build/hibf/compute_kmers.cpp... Generating docs for file src/build/hibf/construct_ibf.cpp... Generating docs for file src/build/hibf/create_ibfs_from_chopper_pack.cpp... Generating docs for file src/build/hibf/hierarchical_build.cpp... Generating docs for file src/build/hibf/initialise_max_bin_kmers.cpp... Generating docs for file src/build/hibf/insert_into_ibf.cpp... Generating docs for file src/build/hibf/loop_over_children.cpp... Generating docs for file src/build/hibf/parse_chopper_pack_header.cpp... Generating docs for file src/build/hibf/parse_chopper_pack_line.cpp... Generating docs for file src/build/hibf/read_chopper_pack_file.cpp... Generating docs for file src/build/hibf/update_user_bins.cpp... Generating docs for file src/build/raptor_build.cpp... Generating docs for file src/raptor.cpp... Generating docs for file src/search/raptor_search.cpp... Generating docs for file src/search/search_hibf.cpp... Generating docs for file src/search/search_ibf.cpp... Generating docs for file src/search/search_multiple.cpp... Generating docs for file src/search/search_socks.cpp... Generating docs for file src/threshold/multiple_error_model.cpp... Generating docs for file src/threshold/one_error_model.cpp... Generating docs for file src/threshold/one_indirect_error_model.cpp... Generating docs for file src/threshold/pascal_row.cpp... Generating docs for file src/threshold/precompute_correction.cpp... Generating docs for file src/threshold/precompute_threshold.cpp... Generating docs for file src/argument_parsing/CMakeLists.txt... Generating docs for file src/build/CMakeLists.txt... Generating docs for file src/build/hibf/CMakeLists.txt... Generating docs for file src/CMakeLists.txt... Generating docs for file src/search/CMakeLists.txt... Generating docs for file src/threshold/CMakeLists.txt... Generating docs for file src/upgrade/CMakeLists.txt... Generating docs for file src/upgrade/raptor_upgrade.cpp... Generating page documentation... Generating docs for page md_LICENSE... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace raptor Generating docs for compound raptor::bin_validator... Generating docs for compound raptor::build_arguments... Generating docs for compound raptor::dna4_traits... Generating docs for compound raptor::hierarchical_interleaved_bloom_filter... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::counting_agent_type... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::membership_agent... Generating docs for nested compound raptor::hierarchical_interleaved_bloom_filter::user_bins... Generating docs for compound raptor::index_factory... Generating docs for compound raptor::pattern_size... Generating docs for compound raptor::positive_integer_validator... Generating docs for compound raptor::power_of_two_validator... Generating docs for compound raptor::raptor_index... Generating docs for compound raptor::search_arguments... Generating docs for compound raptor::size_validator... Generating docs for compound raptor::sync_out... Generating docs for compound raptor::upgrade_arguments... Generating docs for compound raptor::window... Generating docs for namespace raptor::detail Generating docs for namespace raptor::hibf Generating docs for compound raptor::hibf::build_data... Generating docs for compound raptor::hibf::chopper_pack_record... Generating docs for compound raptor::hibf::node_data... Generating docs for namespace raptor::index_structure Generating docs for concept raptor::index_structure::compressible_from... Generating docs for namespace raptor::logspace Generating docs for compound raptor::logspace::add_fn... Generating docs for namespace raptor::threshold Generating docs for compound raptor::threshold::forward_strand_minimiser... Generating docs for compound raptor::threshold::threshold... Generating docs for compound raptor::threshold::threshold_parameters... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... lookup cache used 670/65536 hits=3673 misses=726 finished... make[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target doc make[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/doc/latex' rm -f *.ps *.dvi *.aux *.toc *.idx *.ind *.ilg *.log *.out *.brf *.blg *.bbl refman.pdf pdflatex refman This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array-2016-10-06.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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LaTeX Warning: Reference `loop__over__children_8cpp' on page 12 undefined on in put line 80. LaTeX Warning: Reference `parse__chopper__pack__header_8cpp' on page 12 undefin ed on input line 81. LaTeX Warning: Reference `parse__chopper__pack__line_8cpp' on page 12 undefined on input line 82. LaTeX Warning: Reference `read__chopper__pack__file_8cpp' on page 12 undefined on input line 83. LaTeX Warning: Reference `update__user__bins_8cpp' on page 12 undefined on inpu t line 84. LaTeX Warning: Reference `raptor__search_8cpp' on page 12 undefined on input li ne 85. LaTeX Warning: Reference `search__hibf_8cpp' on page 12 undefined on input line 86. LaTeX Warning: Reference `search__ibf_8cpp' on page 12 undefined on input line 87. LaTeX Warning: Reference `search__multiple_8cpp' on page 12 undefined on input line 88. LaTeX Warning: Reference `search__socks_8cpp' on page 12 undefined on input lin e 89. LaTeX Warning: Reference `multiple__error__model_8cpp' on page 12 undefined on input line 90. LaTeX Warning: Reference `one__error__model_8cpp' on page 12 undefined on input line 91. LaTeX Warning: Reference `one__indirect__error__model_8cpp' on page 12 undefine d on input line 92. LaTeX Warning: Reference `pascal__row_8cpp' on page 12 undefined on input line 93. LaTeX Warning: Reference `precompute__correction_8cpp' on page 12 undefined on input line 94. LaTeX Warning: Reference `precompute__threshold_8cpp' on page 12 undefined on i nput line 95. [12] LaTeX Warning: Reference `raptor__upgrade_8cpp' on page 13 undefined on input l ine 96. ) [13] [14] Chapter 7. (./namespaceraptor.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [15] [16] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [17] [18] [19] [20] [21] [22]) (./namespaceraptor_1_1detail.tex) (./namespaceraptor_1_1hibf.tex [23] Underfull \hbox (badness 10000) in paragraph at lines 40--42 []\T1/phv/m/n/10 size[]_[]t [] (lemon[]::[]List[]Digraph &ibf[]_[]graph, lemon[ ]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/10 <$ [24] Underfull \hbox (badness 3965) in paragraph at lines 54--56 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[ ]_[] Underfull \hbox (badness 10000) in paragraph at lines 56--58 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 58--60 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 3657) in paragraph at lines 62--64 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[] _[] Underfull \hbox (badness 2626) in paragraph at lines 72--74 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 [] Underfull \hbox (badness 1448) in paragraph at lines 76--78 []\T1/phv/m/n/10 template void [] ([]$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3 []::data[]_[] [25] [26] Underfull \hbox (badness 10000) in paragraph at lines 139--140 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 145--146 \T1/pcr/m/n/8 template seqan3[]::interleaved[]_[]bloom[]_[]filter []$\OML/cmm/m /it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[]_[]layout[] Underfull \hbox (badness 10000) in paragraph at lines 164--165 \T1/pcr/m/n/8 template void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 seqan3[]::data[ ]_[]layout[]::uncompressed $\OML/cmm/m/it/8 >$ [27] [28] [29] [30] [31]) (./namespaceraptor_1_1index__structure.tex Underfull \hbox (badness 10000) in paragraph at lines 26--27 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] Overfull \hbox (40.3489pt too wide) in paragraph at lines 32--33 \T1/pcr/m/n/8 using [] = typedef []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[] [32] Underfull \hbox (badness 10000) in paragraph at lines 38--39 \T1/pcr/m/n/8 using [] = typedef seqan3[]::interleaved[]_[]bloom[]_[]filter$\OM L/cmm/m/it/8 <$\T1/pcr/m/n/8 seqan3[]::data[]_[] ) (./namespaceraptor_1_1logspace.tex [33] Underfull \hbox (badness 10000) in paragraph at lines 71--72 \T1/pcr/m/n/8 constexpr double raptor[]::logspace[]::negative[]_[]inf {-std[]:: numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::infinity()} ) (./namespaceraptor_1_1threshold.tex [34] [35] [36]) [37] [38] Chapter 8. (./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. (./structraptor_1_1logspace_1_1add__fn.tex) (./classraptor_1_1bin__validator.tex [41] [42] Underfull \hbox (badness 10000) in paragraph at lines 106--107 \T1/pcr/m/n/8 sharg[]::input[]_[]file[]_[]validator raptor[]::bin[]_[]validator []::sequence[]_[]file[]_[]validator {raptor[]::detail[] ) (./structraptor_1_1build__arguments.tex [43] [44] [45] [46]) (./structraptor_1_1hibf_1_1build__data.tex [47] Underfull \hbox (badness 10000) in paragraph at lines 82--84 []$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 data[]_[]layout[]_[]mode$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[] [48] Underfull \hbox (badness 10000) in paragraph at lines 103--105 \T1/pcr/m/n/8 lemon[]::[]List[]Digraph[]::[]Node[]Map$\OML/cmm/m/it/8 <$[]$>$ [ ]$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::node[]_[]map ) (./structraptor_1_1hibf_1_1chopper__pack__record.tex [49] [50]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1counting__agent__ type.tex Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [51] Underfull \hbox (badness 10000) in paragraph at lines 54--57 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 66--69 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 78--81 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::counting[]_[]agent[]_[]type$\OML/cmm/m/it/8 <$ [52] Underfull \hbox (badness 10000) in paragraph at lines 90--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]$<$ Underfull \hbox (badness 10000) in paragraph at lines 105--109 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 va lue[]_[]t $\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 va lue[]_[]t $\OML/cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [53] Package longtable Warning: Column widths have changed (longtable) in table 9.1 on input line 127. Package longtable Warning: Column widths have changed (longtable) in table 9.2 on input line 134. Underfull \hbox (badness 10000) detected at line 135 [][][] Overfull \hbox (78.18983pt too wide) in paragraph at lines 145--148 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]$<$ Overfull \hbox (78.18983pt too wide) in paragraph at lines 157--160 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]$<$ Underfull \hbox (badness 10000) in paragraph at lines 172--175 \T1/pcr/m/n/8 seqan3[]::counting[]_[]vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 val ue[]_[]t$\OML/cmm/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[] ) (./structraptor_1_1dna4__traits.tex [54] <./structraptor_1_1dna4__traits.pdf> ) (./structraptor_1_1threshold_1_1forward__strand__minimiser.tex [55] [56] Package longtable Warning: Column widths have changed (longtable) in table 9.3 on input line 94. [57] Package longtable Warning: Column widths have changed (longtable) in table 9.4 on input line 142. ) (./classraptor_1_1hierarchical__interleaved__bloom__filter.tex [58] [59] Package longtable Warning: Column widths have changed (longtable) in table 9.5 on input line 72. Underfull \hbox (badness 10000) detected at line 73 [][][] [60] Underfull \hbox (badness 10000) in paragraph at lines 95--97 \T1/pcr/m/n/8 using []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mod e[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ibf[]_[]t = seqan3[] Underfull \hbox (badness 10000) in paragraph at lines 109--111 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Underfull \hbox (badness 10000) in paragraph at lines 120--122 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Underfull \hbox (badness 10000) in paragraph at lines 131--133 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::hierarchical[]_[]interleaved[] Overfull \hbox (58.98982pt too wide) in paragraph at lines 142--144 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::$\OMS/cmsy/m/n/8 ^^X$[] [61] Underfull \hbox (badness 10000) in paragraph at lines 167--169 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 178--180 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[] Underfull \hbox (badness 10000) in paragraph at lines 192--194 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]layout[]_[] [62] Underfull \hbox (badness 10000) in paragraph at lines 203--205 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$[]$>$ []$<$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::ibf[]_[] Underfull \hbox (badness 10000) in paragraph at lines 214--216 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 std[]::vector$\OML/ cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cmm/m/it/8 >$ $>$ []$<$ \T1/pcr/m/n /8 data[]_[] ) (./classraptor_1_1index__factory.tex [63] [64]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1membership__agent .tex Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Package longtable Warning: Column widths have changed (longtable) in table 9.6 on input line 127. Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./raptor_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [167]) (./raptor__search_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__hibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./search__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [168]) (./search__multiple_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 ) (./search__socks_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 [169]) (./multiple__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./one__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./one__indirect__error__model_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [170]) (./pascal__row_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./precompute__correction_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--13 [171] Underfull \hbox (badness 10000) detected at line 36 [][][] ) (./precompute__threshold_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 8--15 Underfull \hbox (badness 10000) detected at line 38 [][][] ) (./argument__parsing_2_c_make_lists_8txt.tex) (./build_2_c_make_lists_8txt.tex) (./build_2hibf_2_c_make_lists_8txt.tex) (./_c_make_lists_8txt.tex) (./search_2_c_make_lists_8txt.tex) (./threshold_2_c_make_lists_8txt.tex) (./upgrade_2_c_make_lists_8txt.tex) (./raptor__upgrade_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [172]) [173] [174] No file refman.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. (./refman.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (176 pages, 521034 bytes). Transcript written on refman.log. makeindex refman.idx This is makeindex, version 2.16 [TeX Live 2022] (kpathsea + Thai support). Scanning input file refman.idx....done (837 entries accepted, 0 rejected). Sorting entries..........done (9156 comparisons). Generating output file refman.ind....done (1045 lines written, 0 warnings). Output written in refman.ind. 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./concepts.tex) [5] [6] Chapter 4. (./hierarchy.tex) [7] [8] Chapter 5. (./annotated.tex) [9] [10] Chapter 6. (./files.tex [11] [12]) [13] [14] Chapter 7. 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(./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. 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[65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 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(./md__l_i_c_e_n_s_e.tex) [1] [2] Chapter 2. (./namespaces.tex) [3] [4] Chapter 3. (./concepts.tex) [5] [6] Chapter 4. (./hierarchy.tex) [7] [8] Chapter 5. (./annotated.tex) [9] [10] Chapter 6. (./files.tex [11] [12]) [13] [14] Chapter 7. 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(./conceptraptor_1_1index__structure_1_1compressible__from.tex) [39] [40] Chapter 9. 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[65] Underfull \hbox (badness 10000) detected at line 48 [][][] Overfull \hbox (18.1601pt too wide) in paragraph at lines 58--60 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (18.1601pt too wide) in paragraph at lines 69--71 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] [66] Overfull \hbox (18.1601pt too wide) in paragraph at lines 80--82 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::membership[] Overfull \hbox (24.7713pt too wide) in paragraph at lines 91--93 []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/i t/8 >$[]\T1/pcr/m/n/8 ::membership[]_[]agent[]::$\OMS/cmsy/m/n/8 ^^X$\T1/pcr/m/ n/8 membership[] Underfull \hbox (badness 10000) in paragraph at lines 105--108 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Underfull \hbox (badness 10000) in paragraph at lines 113--116 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[] Package fancyhdr Warning: \headheight is too small (12.0pt): (fancyhdr) Make it at least 22.16548pt, for example: (fancyhdr) \setlength{\headheight}{22.16548pt}. (fancyhdr) You might also make \topmargin smaller to compensate: (fancyhdr) \addtolength{\topmargin}{-10.16548pt}. [67] Underfull \hbox (badness 10000) detected at line 128 [][][] Overfull \hbox (22.9601pt too wide) in paragraph at lines 138--140 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] Overfull \hbox (22.9601pt too wide) in paragraph at lines 149--151 [] \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::membership[] [68] Underfull \hbox (badness 10000) in paragraph at lines 163--165 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 int64[]_[]t$\OML/cm m/m/it/8 >$ []$<$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] ) (./structraptor_1_1hibf_1_1node__data.tex [69]) (./structraptor_1_1pattern__size.tex [70]) (./classraptor_1_1positive__integer__validator.tex [71] [72]) (./structraptor_1_1power__of__two__validator.tex [73]) (./classraptor_1_1raptor__index.tex [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 124--126 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::vector$\OML /cmm/m/it/8 <$ \T1/pcr/m/n/8 std[]::string $\OML/cmm/m/it/8 >$ $>$ \T1/pcr/m/n/ 8 const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\ T1/pcr/m/n/8 ::bin[]_[]path ( [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 201--203 \T1/pcr/m/n/8 constexpr seqan3[]::data[]_[]layout []$\OML/cmm/m/it/8 <$ \T1/pcr /m/n/8 data[]_[]t $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::data[]_[]layout[]_[]mode = data[]_[]t[] ) (./structraptor_1_1search__arguments.tex [78] Underfull \hbox (badness 10000) in paragraph at lines 66--67 [] \T1/pcr/m/n/8 raptor[]::search[]_[]arguments[]::make[]_[]threshold[]_[]param eters ( [79] [80] [81]) (./classraptor_1_1size__validator.tex [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 97--100 \T1/pcr/m/n/8 requires std[]::convertible[]_[]to$\OML/cmm/m/it/8 <$\T1/pcr/m/n/ 8 std[]::ranges[]::range[]_[]value[]_[]t$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 range[ ]_[]type$\OML/cmm/m/it/8 >$\T1/pcr/m/n/8 , [] const ) (./classraptor_1_1sync__out.tex [84] [85]) (./classraptor_1_1threshold_1_1threshold.tex [86] [87]) (./structraptor_1_1threshold_1_1threshold__parameters.tex [88] Underfull \hbox (badness 10000) in paragraph at lines 73--74 \T1/pcr/m/n/8 double raptor[]::threshold[]::threshold[]_[]parameters[]::percent age {std[]::numeric[]_[]limits$\OML/cmm/m/it/8 <$\T1/pcr/m/n/8 double$\OML/cmm/ m/it/8 >$[] ) (./structraptor_1_1upgrade__arguments.tex [89] [90]) (./classraptor_1_1hierarchical__interleaved__bloom__filter_1_1user__bins.tex [91] Underfull \hbox (badness 10000) in paragraph at lines 45--47 \T1/pcr/m/n/8 std[]::vector$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 int64[]_[]t $\OML/ cmm/m/it/8 >$ \T1/pcr/m/n/8 & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[] [92] Underfull \hbox (badness 10000) in paragraph at lines 67--69 \T1/pcr/m/n/8 std[]::string & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layo ut[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[] Underfull \hbox (badness 10000) in paragraph at lines 78--80 \T1/pcr/m/n/8 size[]_[]t []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_ []mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::num[]_[] Underfull \hbox (badness 10000) in paragraph at lines 100--102 \T1/pcr/m/n/8 std[]::string const & []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_ []layout[]_[]mode[]_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[] Underfull \hbox (badness 10000) in paragraph at lines 111--113 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]ibf[]_[] [93] Underfull \hbox (badness 10000) in paragraph at lines 122--124 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::set[]_[]user[] Underfull \hbox (badness 10000) in paragraph at lines 133--136 \T1/pcr/m/n/8 void []$\OML/cmm/m/it/8 <$ \T1/pcr/m/n/8 data[]_[]layout[]_[]mode []_[] $\OML/cmm/m/it/8 >$[]\T1/pcr/m/n/8 ::user[]_[]bins[]::write[]_[] ) (./structraptor_1_1window.tex [94]) [95] [96] Chapter 10. (./adjust__seed_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./adjust__seed_8hpp_source.tex) (./build__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [97]) (./build__arguments_8hpp_source.tex) (./build__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [98]) (./build__parsing_8hpp_source.tex) (./init__shared__meta_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./init__shared__meta_8hpp_source.tex [99]) (./parse__bin__path_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__bin__path_8hpp_source.tex [100]) (./search__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./search__arguments_8hpp_source.tex [101]) (./search__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__parsing_8hpp_source.tex [102]) (./upgrade__arguments_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./upgrade__arguments_8hpp_source.tex) (./upgrade__parsing_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [103]) (./upgrade__parsing_8hpp_source.tex) (./validators_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./validators_8hpp_source.tex [104] [105] [106]) (./build__from__files_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./build__from__files_8hpp_source.tex [107]) (./build__from__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [108]) (./build__from__minimiser_8hpp_source.tex) (./call__parallel__on__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./call__parallel__on__bins_8hpp_source.tex [109]) (./compute__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./compute__minimiser_8hpp_source.tex) (./bin__prefixes_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [110]) (./bin__prefixes_8hpp_source.tex) (./bin__size__in__bits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./bin__size__in__bits_8hpp_source.tex [111]) (./build__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./build__data_8hpp_source.tex [112]) (./chopper__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [113]) (./chopper__build_8hpp_source.tex) (./chopper__pack__record_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./chopper__pack__record_8hpp_source.tex [114]) (./compute__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__kmers_8hpp_source.tex [115]) (./construct__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 6927) in paragraph at lines 16--17 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ ) (./construct__ibf_8hpp_source.tex [116]) (./create__ibfs__from__chopper__pack_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./create__ibfs__from__chopper__pack_8hpp_source.tex) (./hierarchical__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [117]) (./hierarchical__build_8hpp_source.tex) (./initialise__max__bin__kmers_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 Underfull \hbox (badness 1406) in paragraph at lines 16--17 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] [118]) (./initialise__max__bin__kmers_8hpp_source.tex) (./insert__into__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./insert__into__ibf_8hpp_source.tex [119]) (./loop__over__children_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./loop__over__children_8hpp_source.tex [120]) (./node__data_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./node__data_8hpp_source.tex [121]) (./parse__chopper__pack__header_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__header_8hpp_source.tex [122]) (./parse__chopper__pack__line_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./parse__chopper__pack__line_8hpp_source.tex) (./read__chopper__pack__file_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [123] Underfull \hbox (badness 2689) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst ) (./read__chopper__pack__file_8hpp_source.tex) (./update__user__bins_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 Underfull \hbox (badness 1603) in paragraph at lines 15--16 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ ) (./update__user__bins_8hpp_source.tex [124]) (./index__factory_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./index__factory_8hpp_source.tex [125] [126]) (./raptor__build_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor__build_8hpp_source.tex) (./store__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 ) (./store__index_8hpp_source.tex [127]) (./dna4__traits_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./dna4__traits_8hpp_source.tex [128]) (./hierarchical__interleaved__bloom__filter_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./hierarchical__interleaved__bloom__filter_8hpp_source.tex [129] [130] [131] [132]) (./index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [133] Underfull \hbox (badness 10000) in paragraph at lines 31--33 []\T1/phv/m/n/10 using [] = hierarchical[]_[]interleaved[]_[]bloom[]_[]filter$\ OML/cmm/m/it/10 <$ \T1/phv/m/n/10 seqan3[]::data[]_[]layout[] ) (./index_8hpp_source.tex [134] [135] [136]) (./raptor_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./raptor_8hpp_source.tex) (./do__parallel_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [137]) (./do__parallel_8hpp_source.tex) (./load__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [138]) (./load__index_8hpp_source.tex) (./search_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [139]) (./search_8hpp_source.tex) (./search__hibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__hibf_8hpp_source.tex) (./search__ibf_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [140]) (./search__ibf_8hpp_source.tex) (./search__multiple_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__multiple_8hpp_source.tex [141]) (./search__single_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./search__single_8hpp_source.tex [142] [143]) (./search__socks_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./search__socks_8hpp_source.tex [144]) (./sync__out_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./sync__out_8hpp_source.tex [145]) (./strong__types_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./strong__types_8hpp_source.tex) (./forward__strand__minimiser_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [146]) (./forward__strand__minimiser_8hpp_source.tex [147]) (./logspace_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [148]) (./logspace_8hpp_source.tex [149]) (./multiple__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./multiple__error__model_8hpp_source.tex) (./one__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [150]) (./one__error__model_8hpp_source.tex) (./one__indirect__error__model_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./one__indirect__error__model_8hpp_source.tex [151]) (./pascal__row_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./pascal__row_8hpp_source.tex) (./precompute__correction_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 [152]) (./precompute__correction_8hpp_source.tex) (./precompute__threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./precompute__threshold_8hpp_source.tex [153]) (./threshold_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./threshold_8hpp_source.tex [154]) (./threshold__parameters_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [155]) (./threshold__parameters_8hpp_source.tex) (./upgrade_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./upgrade_8hpp_source.tex [156]) (./upgrade__index_8hpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 ) (./upgrade__index_8hpp_source.tex [157]) (./_l_i_c_e_n_s_e_8md.tex) (./build__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./init__shared__meta_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--4 ) (./parse__bin__path_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [158]) (./search__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./upgrade__parsing_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [159]) (./build__from__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 ) (./compute__minimiser_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./bin__size__in__bits_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [160]) (./chopper__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 ) (./compute__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [161]) (./construct__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 6927) in paragraph at lines 17--19 \T1/phv/m/n/10 seqan3[]::interleaved[]_[]bloom[]_[]filter [] (robin[]_[]hood[]: :unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML /cmm/m/it/10 >$ Underfull \hbox (badness 1205) in paragraph at lines 21--22 []\T1/phv/m/n/10 template seqan3[]::interleaved[]_[]bloom[]_[]filter [] ) (./create__ibfs__from__chopper__pack_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 [162]) (./hierarchical__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--11 Underfull \hbox (badness 10000) in paragraph at lines 23--25 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 25--26 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[]hood[] ) (./initialise__max__bin__kmers_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [163] Underfull \hbox (badness 1406) in paragraph at lines 18--20 \T1/phv/m/n/10 size[]_[]t [] (robin[]_[]hood[]::unordered[]_[]flat[]_[]set$\OML /cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 & kmers, std[] Underfull \hbox (badness 3189) in paragraph at lines 20--22 []\T1/phv/m/n/10 template size[]_[]t [] (robin[]_[] ) (./insert__into__ibf_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 1067) in paragraph at lines 17--19 \T1/phv/m/n/10 ::unordered[]_[]flat[]_[]set$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 size[]_[]t $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 const &kmers, size[]_[]t const n umber[]_[]of[]_[]bins, size[]_[]t const bin[]_[]index, ) (./loop__over__children_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--8 [164] Underfull \hbox (badness 10000) in paragraph at lines 20--22 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] Underfull \hbox (badness 10000) in paragraph at lines 22--23 []\T1/phv/m/n/10 template void [] (robin[]_[]hood[] ) (./parse__chopper__pack__header_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--10 ) (./parse__chopper__pack__line_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--6 [165]) (./read__chopper__pack__file_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--7 Underfull \hbox (badness 2689) in paragraph at lines 17--19 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::string co nst Underfull \hbox (badness 1412) in paragraph at lines 19--21 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ Underfull \hbox (badness 10000) in paragraph at lines 21--22 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./update__user__bins_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 3--5 [166] Underfull \hbox (badness 1603) in paragraph at lines 15--17 \T1/phv/m/n/10 void [] (build[]_[]data$\OML/cmm/m/it/10 <$ \T1/phv/m/n/10 data[ ]_[]layout[]_[]mode $\OML/cmm/m/it/10 >$ \T1/phv/m/n/10 &data, std[]::vector$\O ML/cmm/m/it/10 <$ \T1/phv/m/n/10 int64[]_[]t $\OML/cmm/m/it/10 >$ Underfull \hbox (badness 10000) in paragraph at lines 17--19 []\T1/phv/m/n/10 template void [] (build[]_[]data$\OML/cmm/m/it/10 <$ ) (./raptor__build_8cpp.tex Underfull \hbox (badness 10000) in paragraph at lines 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in paragraph at lines 115--116 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::compressed Overfull \hbox (60.06474pt too wide) in paragraph at lines 117--118 []\T1/phv/m/n/10 create_ibfs_from_chopper_pack$\OML/cmm/m/it/10 <$ \T1/phv/m/n/ 10 se-qan3::data_layout::uncompressed Underfull \hbox (badness 10000) in paragraph at lines 123--125 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 144--146 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 147--149 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 152--154 []| \T1/phv/m/n/10 rap-tor::threshold::forward_strand_minimiser, [][]56[][], Underfull \hbox (badness 10000) in paragraph at lines 186--187 []\T1/phv/m/n/10 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raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ Underfull \hbox (badness 10000) in paragraph at lines 1038--1040 []| \T1/phv/m/n/10 raptor::hierarchical_interleaved_bloom_filter$\OML/cmm/m/it/ 10 <$ [183]) (./refman.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (201 pages, 641394 bytes). Transcript written on refman.log. make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/doc/latex' make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds' dh_auto_test cd obj-x86_64-linux-gnu && make -j15 test ARGS\+=--verbose ARGS\+=-j15 make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j15 UpdateCTestConfiguration from :/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu Constructing a list of tests gmake[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/rule gmake[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 57 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/api_test.dir/all gmake[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 1%] Creating directories for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -Dcfgdir= -P /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/tmp/gtest_project-mkdirs.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-mkdir [ 3%] No download step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-download [ 5%] No update step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-update [ 7%] No patch step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E echo_append cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-patch [ 8%] Performing configure step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake --no-warn-unused-cli -DCMAKE_C_COMPILER=/usr/bin/cc "-DCMAKE_C_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/" -DCMAKE_CXX_COMPILER=/usr/bin/c++ "-DCMAKE_CXX_FLAGS=-g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w" -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_PREFIX=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu -DCMAKE_VERBOSE_MAKEFILE=ON -DBUILD_GMOCK=0 -DCMAKE_INSTALL_LIBDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/ "-GUnix Makefiles" /usr/src/googletest Not searching for unused variables given on the command line. Re-run cmake no build system arguments -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Configuring done -- Generating done -- Build files have been written to: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-configure [ 10%] Performing build step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/gmake gmake[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -S/usr/src/googletest -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 25%] Building CXX object googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -I/usr/src/googletest/googletest/include -I/usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /usr/src/googletest/googletest/src/gtest-all.cc [ 50%] Linking CXX static library ../lib/libgtest.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest.a "CMakeFiles/gtest.dir/src/gtest-all.cc.o" /usr/bin/ranlib ../lib/libgtest.a gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 75%] Building CXX object googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/c++ -isystem /usr/src/googletest/googletest/include -isystem /usr/src/googletest/googletest -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -w -Wall -Wshadow -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -DGTEST_HAS_PTHREAD=1 -MD -MT googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -MF CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d -o CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -c /usr/src/googletest/googletest/src/gtest_main.cc [100%] Linking CXX static library ../lib/libgtest_main.a cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -P CMakeFiles/gtest_main.dir/cmake_clean_target.cmake cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest_main.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/libgtest_main.a CMakeFiles/gtest_main.dir/src/gtest_main.cc.o /usr/bin/ranlib ../lib/libgtest_main.a gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 gmake[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-build [ 12%] Performing install step for 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/gmake install gmake[6]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -S/usr/src/googletest -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest.dir/build.make googletest/CMakeFiles/gtest.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest.dir/build'. gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [ 50%] Built target gtest /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/depend gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /usr/src/googletest /usr/src/googletest/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/DependInfo.cmake --color= Dependencies file "googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/googletest/CMakeFiles/gtest_main.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gtest_main gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/gmake -f googletest/CMakeFiles/gtest_main.dir/build.make googletest/CMakeFiles/gtest_main.dir/build gmake[8]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[8]: Nothing to be done for 'googletest/CMakeFiles/gtest_main.dir/build'. gmake[8]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' [100%] Built target gtest_main gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[7]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' gmake[7]: Nothing to be done for 'preinstall'. gmake[7]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestTargets.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestTargets-none.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestConfigVersion.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/cmake/GTest/GTestConfig.cmake -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest_prod.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest_pred_impl.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-typed-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-test-part.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-spi.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-printers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-param-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-message.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-matchers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-death-test.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/gtest-assertion-result.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-type-util.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-string.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-port.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-port-arch.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-param-util.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-internal.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-filepath.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/gtest-death-test-internal.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/custom -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest-printers.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/custom/gtest-port.h -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/include/gtest/internal/custom/README.md -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/libgtest.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/libgtest_main.a -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/pkgconfig/gtest.pc -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/lib/pkgconfig/gtest_main.pc gmake[6]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-build && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-install [ 14%] Completed 'gtest_project' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E make_directory /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project-complete cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E touch /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/gtest_project/src/gtest_project-stamp/gtest_project-done gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 14%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 26%] Built target chopper_project /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Dependencies file "src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_argument_parsing gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 38%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= Dependencies file "src/build/CMakeFiles/raptor_build.dir/build_from_minimiser.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/compute_minimiser.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Dependencies file "src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 45%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/initialise_max_bin_kmers.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Dependencies file "src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_build_hibf gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 70%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= Dependencies file "src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_multiple.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Dependencies file "src/search/CMakeFiles/raptor_search.dir/search_socks.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_search gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 80%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Dependencies file "src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_threshold gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 92%] Built target raptor_threshold /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= Dependencies file "src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor_upgrade gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 96%] Built target raptor_upgrade /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/issue_142.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/api/CMakeFiles/issue_142.dir/build.make test/api/CMakeFiles/issue_142.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/api/CMakeFiles/issue_142.dir/issue_142.cpp.o -MF CMakeFiles/issue_142.dir/issue_142.cpp.o.d -o CMakeFiles/issue_142.dir/issue_142.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/api/issue_142.cpp [100%] Linking CXX executable issue_142 cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/issue_142.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../../lib/libgtest.a ../../lib/libgtest_main.a ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../lib/libchopper_count_lib.a ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target issue_142 /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles/api_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/api_test.dir/build.make test/CMakeFiles/api_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/api_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target api_test gmake[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test' gmake[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test' gmake[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/rule gmake[3]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 79 /usr/bin/gmake -f CMakeFiles/Makefile2 test/CMakeFiles/cli_test.dir/all gmake[4]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles/gtest_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/gtest_project.dir/build.make test/CMakeFiles/gtest_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/gtest_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 10%] Built target gtest_project /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles/chopper_project.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f CMakeFiles/chopper_project.dir/build.make CMakeFiles/chopper_project.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'CMakeFiles/chopper_project.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 18%] Built target chopper_project /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/upgrade/CMakeFiles/raptor_upgrade.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 21%] Built target raptor_upgrade /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 30%] Built target raptor_argument_parsing /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/CMakeFiles/raptor_build.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 35%] Built target raptor_build /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 53%] Built target raptor_build_hibf /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/search/CMakeFiles/raptor_search.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 60%] Built target raptor_search /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/threshold/CMakeFiles/raptor_threshold.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 69%] Built target raptor_threshold /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/DependInfo.cmake --color= Dependencies file "src/CMakeFiles/raptor.dir/raptor.cpp.o.d" is newer than depends file "/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/src/CMakeFiles/raptor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target raptor gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'src/CMakeFiles/raptor.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 72%] Built target raptor /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build.make test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 73%] Building CXX object test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/upgrade/CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -MF CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o.d -o CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/upgrade/cli_upgrade_test.cpp [ 74%] Linking CXX executable cli_upgrade_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_upgrade_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_upgrade_test.dir/cli_upgrade_test.cpp.o -o cli_upgrade_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 74%] Built target cli_upgrade_test /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build.make test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 75%] Building CXX object test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/argument_parsing/CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -MF CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o.d -o CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/argument_parsing/cli_options_test.cpp [ 77%] Linking CXX executable cli_options_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_options_test.dir/cli_options_test.cpp.o -o cli_options_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 77%] Built target cli_options_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 78%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -MF CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o.d -o CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_hibf_chopper_test.cpp [ 79%] Linking CXX executable cli_build_hibf_chopper_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_chopper_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_chopper_test.dir/cli_build_hibf_chopper_test.cpp.o -o cli_build_hibf_chopper_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 79%] Built target cli_build_hibf_chopper_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_hibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 81%] Building CXX object test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -MF CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o.d -o CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_hibf_test.cpp [ 82%] Linking CXX executable cli_build_hibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_hibf_test.dir/cli_build_hibf_test.cpp.o -o cli_build_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 82%] Built target cli_build_hibf_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 83%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -MF CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o.d -o CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_compressed_test.cpp [ 84%] Linking CXX executable cli_build_ibf_compressed_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_compressed_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_compressed_test.dir/cli_build_ibf_compressed_test.cpp.o -o cli_build_ibf_compressed_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 84%] Built target cli_build_ibf_compressed_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 86%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -MF CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o.d -o CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_partitioned_test.cpp [ 87%] Linking CXX executable cli_build_ibf_partitioned_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_partitioned_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_partitioned_test.dir/cli_build_ibf_partitioned_test.cpp.o -o cli_build_ibf_partitioned_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 87%] Built target cli_build_ibf_partitioned_test /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/CMakeFiles/cli_build_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build.make test/cli/build/CMakeFiles/cli_build_ibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 88%] Building CXX object test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/build/CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -MF CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o.d -o CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/build/cli_build_ibf_test.cpp [ 89%] Linking CXX executable cli_build_ibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_build_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_build_ibf_test.dir/cli_build_ibf_test.cpp.o -o cli_build_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 89%] Built target cli_build_ibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 91%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -MF CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o.d -o CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_hibf_test.cpp [ 92%] Linking CXX executable cli_search_hibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_test.dir/cli_search_hibf_test.cpp.o -o cli_search_hibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 92%] Built target cli_search_hibf_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 93%] Building CXX object test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_hibf_preprocessing_test.cpp [ 94%] Linking CXX executable cli_search_hibf_preprocessing_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_hibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_hibf_preprocessing_test.dir/cli_search_hibf_preprocessing_test.cpp.o -o cli_search_hibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 94%] Built target cli_search_hibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 96%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -MF CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o.d -o CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_ibf_preprocessing_test.cpp [ 97%] Linking CXX executable cli_search_ibf_preprocessing_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_preprocessing_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_preprocessing_test.dir/cli_search_ibf_preprocessing_test.cpp.o -o cli_search_ibf_preprocessing_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 97%] Built target cli_search_ibf_preprocessing_test /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/CMakeFiles/cli_search_ibf_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build.make test/cli/search/CMakeFiles/cli_search_ibf_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [ 98%] Building CXX object test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/c++ -DBINDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/output/\" -DRAPTOR_DATE=\"2021-08-20--no-git\" -DRAPTOR_VERSION="\"2.0.1 (74f815358db47037e93a56b826a9df3692e55680--no-git)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSEQAN3_WITH_CEREAL=1 -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/src/../include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/SEQAN3_CLONE_DIR-NOTFOUND/test/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/vendor/googletest/googletest/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/chopper/include -isystem /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/robin-hood-hashing/src/include -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -pedantic -Wall -Wextra -std=c++20 -MD -MT test/cli/search/CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -MF CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o.d -o CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -c /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test/cli/search/cli_search_ibf_test.cpp [100%] Linking CXX executable cli_search_ibf_test cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/cli_search_ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/seqan-raptor-2.0.0.0.git.fecfbca+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/sharg-parser/include/ -I/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/lib/submodules/lemon/include/ -mpopcnt -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now CMakeFiles/cli_search_ibf_test.dir/cli_search_ibf_test.cpp.o -o cli_search_ibf_test ../../../lib/libgtest.a ../../../lib/libgtest_main.a ../../../lib/libraptor_argument_parsing.a ../../../lib/libraptor_build.a ../../../lib/libraptor_build_hibf.a ../../../lib/libraptor_search.a ../../../lib/libraptor_threshold.a ../../../lib/libraptor_upgrade.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt ../../../lib/libchopper_count_lib.a ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lpthread gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target cli_search_ibf_test /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/depend gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' cd /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/seqan-raptor-2.0.0.0.git.fecfbca+ds /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/CMakeFiles/cli_test.dir/DependInfo.cmake --color= gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/gmake -f test/CMakeFiles/cli_test.dir/build.make test/CMakeFiles/cli_test.dir/build gmake[5]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[5]: Nothing to be done for 'test/CMakeFiles/cli_test.dir/build'. gmake[5]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' [100%] Built target cli_test gmake[4]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/CMakeFiles 0 gmake[3]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' gmake[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test' Error: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/header is not a directory Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test/api/issue_142 1: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api/issue_142 1: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: test/cli/argument_parsing/cli_options_test 2: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing/cli_options_test 2: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/argument_parsing 2: Test timeout computed to be: 10000000 test 3 Start 3: test/cli/build/cli_build_hibf_chopper_test 3: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/cli_build_hibf_chopper_test 3: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build 3: Test timeout computed to be: 10000000 test 4 Start 4: test/cli/build/cli_build_hibf_test 4: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/cli_build_hibf_test 4: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build 4: Test timeout computed to be: 10000000 test 5 Start 5: test/cli/build/cli_build_ibf_compressed_test 5: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_compressed_test 5: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build 5: Test timeout computed to be: 10000000 test 6 Start 6: test/cli/build/cli_build_ibf_partitioned_test 6: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_partitioned_test 6: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build 6: Test timeout computed to be: 10000000 test 7 Start 7: test/cli/build/cli_build_ibf_test 7: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build/cli_build_ibf_test 7: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/build 7: Test timeout computed to be: 10000000 test 8 Start 8: test/cli/search/cli_search_hibf_test 8: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/cli_search_hibf_test 8: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search 8: Test timeout computed to be: 10000000 test 9 Start 9: test/cli/search/cli_search_hibf_preprocessing_test 9: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/cli_search_hibf_preprocessing_test 9: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search 9: Test timeout computed to be: 10000000 test 10 Start 10: test/cli/search/cli_search_ibf_preprocessing_test 10: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/cli_search_ibf_preprocessing_test 10: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search 10: Test timeout computed to be: 10000000 test 11 Start 11: test/cli/search/cli_search_ibf_test 11: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search/cli_search_ibf_test 11: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/search 11: Test timeout computed to be: 10000000 test 12 Start 12: test/cli/upgrade/cli_upgrade_test 12: Test command: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade/cli_upgrade_test 12: Working Directory: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu/test/cli/upgrade 12: Test timeout computed to be: 10000000 1: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 1: [==========] Running 1 test from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 1 test from issue 1: [ RUN ] issue.142 1: [ OK ] issue.142 (58 ms) 1: [----------] 1 test from issue (58 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 1 test from 1 test suite ran. (58 ms total) 1: [ PASSED ] 1 test. 2: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 2: [==========] Running 28 tests from 4 test suites. 2: [----------] Global test environment set-up. 2: [----------] 3 tests from argparse_main 2: [ RUN ] argparse_main.no_options 2: [ OK ] argparse_main.no_options (45 ms) 2: [ RUN ] argparse_main.no_subparser 2: [ OK ] argparse_main.no_subparser (73 ms) 2: [ RUN ] argparse_main.unknown_option 3: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 3: [==========] Running 1 test from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 1 test from build_hibf_chopper 3: [ RUN ] build_hibf_chopper.pipeline 4: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 4: [==========] Running 25 tests from 2 test suites. 4: [----------] Global test environment set-up. 4: [----------] 1 test from build_hibf 4: [ RUN ] build_hibf.three_levels 5: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 5: [==========] Running 49 tests from 2 test suites. 5: [----------] Global test environment set-up. 5: [----------] 1 test from build_ibf_compressed 5: [ RUN ] build_ibf_compressed.wrong_compression 5: [ OK ] build_ibf_compressed.wrong_compression (54 ms) 5: [----------] 1 test from build_ibf_compressed (54 ms total) 5: 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error 6: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 6: [==========] Running 25 tests from 2 test suites. 6: [----------] Global test environment set-up. 6: [----------] 1 test from build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned.pipeline_misc 7: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 7: [==========] Running 36 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 36 tests from build_ibf_suite/build_ibf 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (81 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial 8: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 8: [==========] Running 37 tests from 2 test suites. 8: [----------] Global test environment set-up. 8: [----------] 1 test from search_hibf 8: [ RUN ] search_hibf.three_levels 9: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 9: [==========] Running 48 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 10: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 10: [==========] Running 49 tests from 2 test suites. 10: [----------] Global test environment set-up. 10: [----------] 1 test from search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing.pipeline_compressed_index 11: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 11: [==========] Running 49 tests from 2 test suites. 11: [----------] Global test environment set-up. 11: [----------] 1 test from search_ibf 11: [ RUN ] search_ibf.cache_thresholds 1/12 Test #1: test/api/issue_142 ................................... Passed 0.25 sec 2: [ OK ] argparse_main.unknown_option (63 ms) 2: [----------] 3 tests from argparse_main (182 ms total) 2: 2: [----------] 16 tests from argparse_build 2: [ RUN ] argparse_build.no_options 12: Running main() from /usr/src/googletest/googletest/src/gtest_main.cc 12: [==========] Running 3 tests from 1 test suite. 12: [----------] Global test environment set-up. 12: [----------] 3 tests from upgrade 12: [ RUN ] upgrade.ibf 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (72 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel 2: [ OK ] argparse_build.no_options (51 ms) 2: [ RUN ] argparse_build.input_missing 2: [ OK ] argparse_build.input_missing (34 ms) 2: [ RUN ] argparse_build.input_invalid 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (45 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial 12: [ OK ] upgrade.ibf (99 ms) 12: [ RUN ] upgrade.compressed_ibf 2: [ OK ] argparse_build.input_invalid (20 ms) 2: [ RUN ] argparse_build.output_missing 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (216 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error 2: [ OK ] argparse_build.output_missing (12 ms) 2: [ RUN ] argparse_build.directory_missing 2: [ OK ] argparse_build.directory_missing (41 ms) 2: [ RUN ] argparse_build.alias 12: [ OK ] upgrade.compressed_ibf (65 ms) 12: [ RUN ] upgrade.partitioned_ibf 7: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (81 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel 3: [ OK ] build_hibf_chopper.pipeline (355 ms) 3: [----------] 1 test from build_hibf_chopper (355 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 1 test from 1 test suite ran. (355 ms total) 3: [ PASSED ] 1 test. 2/12 Test #3: test/cli/build/cli_build_hibf_chopper_test ........... Passed 0.40 sec 2: [ OK ] argparse_build.alias (34 ms) 2: [ RUN ] argparse_build.size_missing 10: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (243 ms) 10: [----------] 1 test from search_ibf_preprocessing (243 ms total) 10: 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error 2: [ OK ] argparse_build.size_missing (45 ms) 2: [ RUN ] argparse_build.size_wrong_space 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (295 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (141 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error 2: [ OK ] argparse_build.size_wrong_space (41 ms) 2: [ RUN ] argparse_build.size_wrong_suffix 11: [ OK ] search_ibf.cache_thresholds (327 ms) 11: [----------] 1 test from search_ibf (327 ms total) 11: 11: [----------] 48 tests from search_ibf_suite/search_ibf 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (137 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial 2: [ OK ] argparse_build.size_wrong_suffix (43 ms) 2: [ RUN ] argparse_build.kmer_window 2: [ OK ] argparse_build.kmer_window (32 ms) 2: [ RUN ] argparse_build.kmer_shape 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (101 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error 2: [ OK ] argparse_build.kmer_shape (54 ms) 2: [ RUN ] argparse_build.zero_threads 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (128 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (187 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_build.zero_threads (43 ms) 2: [ RUN ] argparse_build.no_bins_in_file 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (69 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (238 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (267 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error 2: [ OK ] argparse_build.no_bins_in_file (53 ms) 2: [ RUN ] argparse_build.empty_file_in_bin 12: [ OK ] upgrade.partitioned_ibf (385 ms) 12: [----------] 3 tests from upgrade (550 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 3 tests from 1 test suite ran. (550 ms total) 12: [ PASSED ] 3 tests. 3/12 Test #12: test/cli/upgrade/cli_upgrade_test .................... Passed 0.58 sec 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (119 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial 2: [ OK ] argparse_build.empty_file_in_bin (59 ms) 2: [ RUN ] argparse_build.mixed_input 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (147 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error 2: [ OK ] argparse_build.mixed_input (57 ms) 2: [ RUN ] argparse_build.wrong_parts 2: [ OK ] argparse_build.wrong_parts (32 ms) 2: [----------] 16 tests from argparse_build (657 ms total) 2: 2: [----------] 8 tests from argparse_search 2: [ RUN ] argparse_search.no_options 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (173 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (117 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (205 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error 6: [ OK ] build_ibf_partitioned.pipeline_misc (842 ms) 6: [----------] 1 test from build_ibf_partitioned (842 ms total) 6: 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed 2: [ OK ] argparse_search.no_options (49 ms) 2: [ RUN ] argparse_search.ibf_missing 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (229 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_search.ibf_missing (30 ms) 2: [ RUN ] argparse_search.ibf_wrong 2: [ OK ] argparse_search.ibf_wrong (49 ms) 2: [ RUN ] argparse_search.query_missing 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (150 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial 2: [ OK ] argparse_search.query_missing (50 ms) 2: [ RUN ] argparse_search.query_wrong 11: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (206 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error 2: [ OK ] argparse_search.query_wrong (51 ms) 2: [ RUN ] argparse_search.output_missing 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (250 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error 2: [ OK ] argparse_search.output_missing (55 ms) 2: [ RUN ] argparse_search.old_index 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (239 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (152 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (388 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (123 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error 2: [ OK ] argparse_search.old_index (79 ms) 2: [ RUN ] argparse_search.temporary_warning 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (423 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (115 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (216 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (303 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error 2: [ OK ] argparse_search.temporary_warning (238 ms) 2: [----------] 8 tests from argparse_search (603 ms total) 2: 2: [----------] 1 test from argparse_upgrade 2: [ RUN ] argparse_upgrade.kmer_window 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (351 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 2: [ OK ] argparse_upgrade.kmer_window (49 ms) 2: [----------] 1 test from argparse_upgrade (49 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 28 tests from 4 test suites ran. (1494 ms total) 2: [ PASSED ] 28 tests. 4/12 Test #2: test/cli/argument_parsing/cli_options_test ........... Passed 1.55 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (339 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error 7: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (165 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (240 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (69 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (77 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel 4: [ OK ] build_hibf.three_levels (1747 ms) 4: [----------] 1 test from build_hibf (1747 ms total) 4: 4: [----------] 24 tests from build_hibf_suite/build_hibf 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (67 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial 8: [ OK ] search_hibf.three_levels (1663 ms) 8: [----------] 1 test from search_hibf (1663 ms total) 8: 8: [----------] 36 tests from search_hibf_suite/search_hibf 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (223 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (275 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (32 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (482 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (407 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (75 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (355 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (94 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (93 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (130 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (75 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (119 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (102 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (51 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (56 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (271 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (131 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (329 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (312 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (116 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (203 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (308 ms) 11: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (316 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (239 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (139 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (115 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (132 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (718 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (231 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (263 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (204 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (420 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (446 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (147 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (355 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (100 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (144 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (187 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (152 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial 11: [ OK ] search_ibf_suite/search_ibf.socks/1_bins_19_window_0_error (112 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (115 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.socks/64_bins_19_window_0_error (115 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (192 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error 7: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (208 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.socks/128_bins_19_window_0_error (85 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 11: ./test/cli/search/cli_search_ibf_test.cpp:40: Skipped 11: SOCKS only supports (k,k)-minimizers 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error (0 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (387 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (260 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_parallel (87 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (464 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (117 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (385 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_19_window_serial (83 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (130 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_parallel (87 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (316 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (774 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (93 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/1_bins_23_window_serial (103 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (318 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (452 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (273 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (101 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (107 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (403 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (91 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_parallel (180 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (91 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (91 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (364 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_19_window_serial (155 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (105 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_parallel (111 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial 11: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (98 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (427 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (360 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (108 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/64_bins_23_window_serial (176 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (357 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (118 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (653 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (488 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (101 ms) 11: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_parallel (184 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial 11: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (123 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (461 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (241 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (447 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (89 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (115 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (51 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (372 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_19_window_serial (323 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (102 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (71 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (93 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (60 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (574 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (117 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (1343 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_parallel (209 ms) 7: [ RUN ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (404 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (150 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (447 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (131 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (365 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (157 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (121 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (127 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial 7: [ OK ] build_ibf_suite/build_ibf.with_socks_file/128_bins_23_window_serial (330 ms) 7: [----------] 36 tests from build_ibf_suite/build_ibf (4911 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 36 tests from 1 test suite ran. (4911 ms total) 7: [ PASSED ] 36 tests. 5/12 Test #7: test/cli/build/cli_build_ibf_test .................... Passed 4.94 sec 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (135 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (328 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (128 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (131 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (340 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (603 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (561 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (116 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (131 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (306 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (245 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (162 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (147 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (156 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (288 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (118 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (399 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (568 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (343 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (97 ms) 8: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (589 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (211 ms) 4: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial 8: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (80 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (104 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (301 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (280 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error 4: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (239 ms) 4: [----------] 24 tests from build_hibf_suite/build_hibf (4324 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 25 tests from 2 test suites ran. (6071 ms total) 4: [ PASSED ] 25 tests. 6/12 Test #4: test/cli/build/cli_build_hibf_test ................... Passed 6.09 sec 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (123 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (1467 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (87 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (91 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (501 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (236 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (600 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (430 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (243 ms) 11: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (267 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (552 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (132 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error 11: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (319 ms) 11: [----------] 48 tests from search_ibf_suite/search_ibf (6315 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 49 tests from 2 test suites ran. (6643 ms total) 11: [ PASSED ] 40 tests. 11: [ SKIPPED ] 9 tests, listed below: 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/1_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/64_bins_23_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_19_window_1_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_0_error 11: [ SKIPPED ] search_ibf_suite/search_ibf.socks/128_bins_23_window_1_error 7/12 Test #11: test/cli/search/cli_search_ibf_test .................. Passed 6.67 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (379 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (130 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (521 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (563 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (423 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (304 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (343 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (458 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (505 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (303 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (139 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (471 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (429 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (129 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (606 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (903 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (286 ms) 8: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel0_error (147 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (590 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial0_error (160 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (531 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error 8: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (315 ms) 8: [----------] 36 tests from search_hibf_suite/search_hibf (6611 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 37 tests from 2 test suites ran. (8275 ms total) 8: [ PASSED ] 37 tests. 8/12 Test #8: test/cli/search/cli_search_hibf_test ................. Passed 8.31 sec 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel0_error (267 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (799 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (516 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial0_error (314 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (621 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel0_error (256 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error 5: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial0_error (254 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error (0 ms) 5: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 5: ./test/cli/build/cli_build_ibf_compressed_test.cpp:72: Skipped 5: SOCKS only supports (k,k)-minimizers 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error (0 ms) 5: [----------] 48 tests from build_ibf_compressed_suite/build_ibf_compressed (9272 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 49 tests from 2 test suites ran. (9327 ms total) 5: [ PASSED ] 31 tests. 5: [ SKIPPED ] 18 tests, listed below: 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/1_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/64_bins_23_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_19_window_serial1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_parallel1_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial0_error 5: [ SKIPPED ] build_ibf_compressed_suite/build_ibf_compressed.pipeline_socks/128_bins_23_window_serial1_error 9/12 Test #5: test/cli/build/cli_build_ibf_compressed_test ......... Passed 9.36 sec 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (518 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (699 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (640 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (1325 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (625 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (754 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (734 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (223 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (245 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (255 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (1406 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (721 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (267 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (338 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (645 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (268 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (487 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (275 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (308 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (292 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (671 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (462 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (531 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (496 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (818 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (489 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (318 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (310 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (374 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (880 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (386 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (500 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (356 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (539 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (555 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (624 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (1399 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (555 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (593 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (540 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (594 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (496 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (1256 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (387 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (687 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (519 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (645 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (629 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (1580 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (595 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (816 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (666 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (1448 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (919 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (617 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (623 ms) 9: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (1355 ms) 6: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (1570 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error 9: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (703 ms) 9: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (21651 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 48 tests from 1 test suite ran. (21651 ms total) 9: [ PASSED ] 48 tests. 10/12 Test #9: test/cli/search/cli_search_hibf_preprocessing_test ... Passed 21.70 sec 6: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (1484 ms) 6: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (22202 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 25 tests from 2 test suites ran. (23045 ms total) 6: [ PASSED ] 25 tests. 11/12 Test #6: test/cli/build/cli_build_ibf_partitioned_test ........ Passed 23.07 sec 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (1723 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (611 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (644 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (907 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (860 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (1910 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (1515 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (1515 ms) 10: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error 10: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (1564 ms) 10: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (32472 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 49 tests from 2 test suites ran. (32716 ms total) 10: [ PASSED ] 49 tests. 12/12 Test #10: test/cli/search/cli_search_ibf_preprocessing_test .... Passed 32.76 sec 100% tests passed, 0 tests failed out of 12 Total Test time (real) = 1769.07 sec make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/seqan-raptor-2.0.0.0.git.fecfbca\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/seqan-raptor-2.0.0.0.git.fecfbca+ds -B/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/debian/tmp/usr/bin/raptor -- Installing: /build/seqan-raptor-2.0.0.0.git.fecfbca+ds/debian/tmp/usr/bin/chopper make[1]: Leaving directory '/build/seqan-raptor-2.0.0.0.git.fecfbca+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_2.0.0.0.git.fecfbca+ds-3_amd64.deb'. dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.deb'. dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_2.0.0.0.git.fecfbca+ds-3_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-raptor_2.0.0.0.git.fecfbca+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/837095/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/837095/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/837095 and its subdirectories I: Current time: Sat Apr 15 15:24:09 +14 2023 I: pbuilder-time-stamp: 1681521849