I: pbuilder: network access will be disabled during build I: Current time: Tue May 16 02:52:57 +14 2023 I: pbuilder-time-stamp: 1684155177 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pybedtools_0.9.0-4.dsc] I: copying [./python-pybedtools_0.9.0.orig.tar.gz] I: copying [./python-pybedtools_0.9.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 3 11:28:23 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.9.0-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pybedtools in python-pybedtools-0.9.0 dpkg-source: info: unpacking python-pybedtools_0.9.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.9.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying add_missing_shebang.patch dpkg-source: info: applying yaml_safe_load.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3866/tmp/hooks/D01_modify_environment starting debug: Running on codethink14-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 16 02:53 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3866/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3866/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3866 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.k3RmV9CK/pbuilderrc_AIE6 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.k3RmV9CK/b2 --logfile b2/build.log --extrapackages usrmerge python-pybedtools_0.9.0-4.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 14 00:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3866/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-pytest, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libice6{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} ucf{a} unicode-data{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-tables r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 212 newly installed, 0 to remove and 0 not upgraded. Need to get 162 MB of archives. After unpacking 768 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 bedtools arm64 2.30.0+dfsg-3 [581 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [973 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-5 [369 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libtk8.6 arm64 8.6.13-2 [729 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1 [540 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 blt arm64 2.5.3+dfsg-4.1 [14.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 cython3 arm64 0.29.32-2+b1 [1223 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 70 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 fontconfig arm64 2.14.1-4 [449 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 fonts-lyx all 2.3.7-1 [186 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libpixman-1-0 arm64 0.42.2-1 [470 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libxcb-render0 arm64 1.15-1 [115 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libxcb-shm0 arm64 1.15-1 [106 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libcairo2 arm64 1.16.0-7 [527 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-9 [357 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libcurl4 arm64 7.88.1-9 [362 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libdatrie1 arm64 0.2.13-2+b1 [42.6 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-2 [1310 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 libopenblas0-pthread arm64 0.3.21+ds-4 [4532 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [24.9 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 libopenblas0 arm64 0.3.21+ds-4 [32.6 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 libopenblas-pthread-dev arm64 0.3.21+ds-4 [3169 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 libopenblas-dev arm64 0.3.21+ds-4 [44.9 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 libthai-data all 0.1.29-1 [176 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 libthai0 arm64 0.1.29-1 [56.2 kB] Get: 122 http://deb.debian.org/debian bookworm/main arm64 libpango-1.0-0 arm64 1.50.12+ds-1 [200 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 libpangoft2-1.0-0 arm64 1.50.12+ds-1 [44.5 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 libpangocairo-1.0-0 arm64 1.50.12+ds-1 [32.0 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 libpaper1 arm64 1.1.29 [12.6 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 libpaper-utils arm64 1.1.29 [8776 B] Get: 127 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 131 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 132 http://deb.debian.org/debian bookworm/main arm64 libqhull-r8.0 arm64 2020.2-5 [230 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.1 [99.1 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.1 [109 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 libxsimd-dev arm64 8.1.0-7 [88.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 libxslt1.1 arm64 1.1.35-1 [231 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 libxt6 arm64 1:1.2.1-1.1 [172 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 147 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 150 http://deb.debian.org/debian bookworm/main arm64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 151 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 153 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 154 http://deb.debian.org/debian bookworm/main arm64 python3-babel all 2.10.3-1 [103 kB] Get: 155 http://deb.debian.org/debian bookworm/main arm64 python3-gast all 0.5.2-2 [9364 B] Get: 156 http://deb.debian.org/debian bookworm/main arm64 python3-beniget all 0.4.1-3 [9920 B] Get: 157 http://deb.debian.org/debian bookworm/main arm64 python3-brotli arm64 1.0.9-2+b6 [281 kB] Get: 158 http://deb.debian.org/debian bookworm/main arm64 python3-certifi all 2022.9.24-1 [153 kB] Get: 159 http://deb.debian.org/debian bookworm/main arm64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 160 http://deb.debian.org/debian bookworm/main arm64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 161 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 162 http://deb.debian.org/debian bookworm/main arm64 python3-contourpy arm64 1.0.7-1+b1 [154 kB] Get: 163 http://deb.debian.org/debian bookworm/main arm64 python3-cycler all 0.11.0-1 [8020 B] Get: 164 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main arm64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 166 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 167 http://deb.debian.org/debian bookworm/main arm64 python3-roman all 3.3-3 [9880 B] Get: 168 http://deb.debian.org/debian bookworm/main arm64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 169 http://deb.debian.org/debian bookworm/main arm64 python3-ply all 3.11-5 [65.8 kB] Get: 170 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB] Get: 171 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB] Get: 172 http://deb.debian.org/debian bookworm/main arm64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 173 http://deb.debian.org/debian bookworm/main arm64 python3-mpmath all 1.2.1-2 [418 kB] Get: 174 http://deb.debian.org/debian bookworm/main arm64 python3-sympy all 1.11.1-1 [4358 kB] Get: 175 http://deb.debian.org/debian bookworm/main arm64 python3-fs all 2.4.16-2 [95.2 kB] Get: 176 http://deb.debian.org/debian bookworm/main arm64 python3-lxml arm64 4.9.2-1+b1 [1074 kB] Get: 177 http://deb.debian.org/debian bookworm/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 178 http://deb.debian.org/debian bookworm/main arm64 unicode-data all 15.0.0-1 [7984 kB] Get: 179 http://deb.debian.org/debian bookworm/main arm64 python3-fonttools arm64 4.38.0-1+b1 [990 kB] Get: 180 http://deb.debian.org/debian bookworm/main arm64 python3-idna all 3.3-1 [39.4 kB] Get: 181 http://deb.debian.org/debian bookworm/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 182 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 183 http://deb.debian.org/debian bookworm/main arm64 python3-markupsafe arm64 2.1.2-1+b1 [13.3 kB] Get: 184 http://deb.debian.org/debian bookworm/main arm64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 185 http://deb.debian.org/debian bookworm/main arm64 python3-kiwisolver arm64 1.4.4-1+b1 [55.4 kB] Get: 186 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB] Get: 187 http://deb.debian.org/debian bookworm/main arm64 python3-tk arm64 3.11.2-3 [97.7 kB] Get: 188 http://deb.debian.org/debian bookworm/main arm64 python3-pil.imagetk arm64 9.4.0-1.1+b1 [74.4 kB] Get: 189 http://deb.debian.org/debian bookworm/main arm64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 190 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 191 http://deb.debian.org/debian bookworm/main arm64 python3-matplotlib arm64 3.6.3-1+b1 [6774 kB] Get: 192 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 193 http://deb.debian.org/debian bookworm/main arm64 sphinx-common all 5.3.0-4 [653 kB] Get: 194 http://deb.debian.org/debian bookworm/main arm64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 195 http://deb.debian.org/debian bookworm/main arm64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 196 http://deb.debian.org/debian bookworm/main arm64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 197 http://deb.debian.org/debian bookworm/main arm64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 198 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] Get: 199 http://deb.debian.org/debian bookworm/main arm64 python3-numpydoc all 1.5.0-1 [43.0 kB] Get: 200 http://deb.debian.org/debian bookworm/main arm64 python3-pandas-lib arm64 1.5.3+dfsg-2 [3048 kB] Get: 201 http://deb.debian.org/debian bookworm/main arm64 python3-pandas all 1.5.3+dfsg-2 [2885 kB] Get: 202 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 203 http://deb.debian.org/debian bookworm/main arm64 python3-psutil arm64 5.9.4-1+b1 [189 kB] Get: 204 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 205 http://deb.debian.org/debian bookworm/main arm64 python3-pysam arm64 0.20.0+ds-3+b1 [1493 kB] Get: 206 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Get: 207 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 208 http://deb.debian.org/debian bookworm/main arm64 python3-yaml arm64 6.0-3+b2 [108 kB] Get: 209 http://deb.debian.org/debian bookworm/main arm64 zip arm64 3.0-13 [223 kB] Get: 210 http://deb.debian.org/debian bookworm/main arm64 unzip arm64 6.0-28 [157 kB] Get: 211 http://deb.debian.org/debian bookworm/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 212 http://deb.debian.org/debian bookworm/main arm64 r-base-core arm64 4.2.2.20221110-2 [25.7 MB] Fetched 162 MB in 3s (55.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20366 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../006-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. 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Preparing to unpack .../132-python-babel-localedata_2.10.3-1_all.deb ... Unpacking python-babel-localedata (2.10.3-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../133-python-matplotlib-data_3.6.3-1_all.deb ... Unpacking python-matplotlib-data (3.6.3-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../134-python3-alabaster_0.7.12-1_all.deb ... Unpacking python3-alabaster (0.7.12-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../135-python3-all_3.11.2-1+b1_arm64.deb ... Unpacking python3-all (3.11.2-1+b1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../136-python3.11-dev_3.11.2-6_arm64.deb ... Unpacking python3.11-dev (3.11.2-6) ... Selecting previously unselected package python3-dev. Preparing to unpack .../137-python3-dev_3.11.2-1+b1_arm64.deb ... Unpacking python3-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../138-python3-all-dev_3.11.2-1+b1_arm64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../139-python3-appdirs_1.4.4-3_all.deb ... Unpacking python3-appdirs (1.4.4-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../140-python3-attr_22.2.0-1_all.deb ... Unpacking python3-attr (22.2.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../141-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../142-python3-tz_2022.7.1-3_all.deb ... Unpacking python3-tz (2022.7.1-3) ... Selecting previously unselected package python3-babel. Preparing to unpack .../143-python3-babel_2.10.3-1_all.deb ... Unpacking python3-babel (2.10.3-1) ... Selecting previously unselected package python3-gast. Preparing to unpack .../144-python3-gast_0.5.2-2_all.deb ... Unpacking python3-gast (0.5.2-2) ... Selecting previously unselected package python3-beniget. Preparing to unpack .../145-python3-beniget_0.4.1-3_all.deb ... Unpacking python3-beniget (0.4.1-3) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../146-python3-brotli_1.0.9-2+b6_arm64.deb ... Unpacking python3-brotli (1.0.9-2+b6) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../147-python3-certifi_2022.9.24-1_all.deb ... Unpacking python3-certifi (2022.9.24-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../148-python3-chardet_5.1.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.1.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../149-python3-charset-normalizer_3.0.1-2_all.deb ... Unpacking python3-charset-normalizer (3.0.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../150-python3-numpy_1%3a1.24.2-1_arm64.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../151-python3-contourpy_1.0.7-1+b1_arm64.deb ... Unpacking python3-contourpy (1.0.7-1+b1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../152-python3-cycler_0.11.0-1_all.deb ... Unpacking python3-cycler (0.11.0-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../153-python3-six_1.16.0-4_all.deb ... Unpacking python3-six (1.16.0-4) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../154-python3-dateutil_2.8.2-2_all.deb ... Unpacking python3-dateutil (2.8.2-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../155-python3-decorator_5.1.1-3_all.deb ... Unpacking python3-decorator (5.1.1-3) ... Selecting previously unselected package python3-roman. Preparing to unpack .../156-python3-roman_3.3-3_all.deb ... Unpacking python3-roman (3.3-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../157-python3-docutils_0.19+dfsg-6_all.deb ... Unpacking python3-docutils (0.19+dfsg-6) ... Selecting previously unselected package python3-ply. Preparing to unpack .../158-python3-ply_3.11-5_all.deb ... Unpacking python3-ply (3.11-5) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../159-python3-pythran_0.11.0+ds-7_arm64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../160-python3-scipy_1.10.1-2_arm64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../161-python3-ufolib2_0.14.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.14.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../162-python3-mpmath_1.2.1-2_all.deb ... Unpacking python3-mpmath (1.2.1-2) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../163-python3-sympy_1.11.1-1_all.deb ... Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-fs. Preparing to unpack .../164-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../165-python3-lxml_4.9.2-1+b1_arm64.deb ... Unpacking python3-lxml:arm64 (4.9.2-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../166-python3-lz4_4.0.2+dfsg-1+b2_arm64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b2) ... Selecting previously unselected package unicode-data. Preparing to unpack .../167-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../168-python3-fonttools_4.38.0-1+b1_arm64.deb ... Unpacking python3-fonttools (4.38.0-1+b1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../169-python3-idna_3.3-1_all.deb ... Unpacking python3-idna (3.3-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../170-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../171-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../172-python3-markupsafe_2.1.2-1+b1_arm64.deb ... Unpacking python3-markupsafe (2.1.2-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../173-python3-jinja2_3.1.2-1_all.deb ... Unpacking python3-jinja2 (3.1.2-1) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../174-python3-kiwisolver_1.4.4-1+b1_arm64.deb ... Unpacking python3-kiwisolver (1.4.4-1+b1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../175-python3-pil_9.4.0-1.1+b1_arm64.deb ... Unpacking python3-pil:arm64 (9.4.0-1.1+b1) ... Selecting previously unselected package python3-tk:arm64. Preparing to unpack .../176-python3-tk_3.11.2-3_arm64.deb ... Unpacking python3-tk:arm64 (3.11.2-3) ... Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../177-python3-pil.imagetk_9.4.0-1.1+b1_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (9.4.0-1.1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../178-python3-pyparsing_3.0.9-1_all.deb ... Unpacking python3-pyparsing (3.0.9-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../179-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../180-python3-matplotlib_3.6.3-1+b1_arm64.deb ... Unpacking python3-matplotlib (3.6.3-1+b1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../181-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../182-sphinx-common_5.3.0-4_all.deb ... Unpacking sphinx-common (5.3.0-4) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../183-python3-pygments_2.14.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.14.0+dfsg-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../184-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../185-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../186-python3-snowballstemmer_2.2.0-2_all.deb ... Unpacking python3-snowballstemmer (2.2.0-2) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../187-python3-sphinx_5.3.0-4_all.deb ... Unpacking python3-sphinx (5.3.0-4) ... Selecting previously unselected package python3-numpydoc. Preparing to unpack .../188-python3-numpydoc_1.5.0-1_all.deb ... Unpacking python3-numpydoc (1.5.0-1) ... Selecting previously unselected package python3-pandas-lib:arm64. Preparing to unpack .../189-python3-pandas-lib_1.5.3+dfsg-2_arm64.deb ... Unpacking python3-pandas-lib:arm64 (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../190-python3-pandas_1.5.3+dfsg-2_all.deb ... Unpacking python3-pandas (1.5.3+dfsg-2) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../191-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../192-python3-psutil_5.9.4-1+b1_arm64.deb ... Unpacking python3-psutil (5.9.4-1+b1) ... Selecting previously unselected package python3-py. Preparing to unpack .../193-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../194-python3-pysam_0.20.0+ds-3+b1_arm64.deb ... Unpacking python3-pysam (0.20.0+ds-3+b1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../195-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../196-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../197-python3-yaml_6.0-3+b2_arm64.deb ... Unpacking python3-yaml (6.0-3+b2) ... Selecting previously unselected package zip. Preparing to unpack .../198-zip_3.0-13_arm64.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../199-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../200-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../201-r-base-core_4.2.2.20221110-2_arm64.deb ... Unpacking r-base-core (4.2.2.20221110-2) ... Setting up libhtscodecs2:arm64 (1.3.0-4) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up liblcms2-2:arm64 (2.14-2) ... Setting up libpixman-1-0:arm64 (0.42.2-1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libpsl5:arm64 (0.21.2-1) ... Setting up libboost1.74-dev:arm64 (1.74.0+ds1-20) ... Setting up libicu72:arm64 (72.1-3) ... Setting up liblerc4:arm64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libdatrie1:arm64 (0.2.13-2+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libglib2.0-0:arm64 (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:arm64 (1.52.0-1) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:arm64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:arm64 (2.1-6.1) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:arm64 (8.1.0-7) ... Setting up zip (3.0-13) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up libimagequant0:arm64 (2.17.0-1) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.2.4-0.1) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:arm64 (4.5.0-5) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libopenjp2-7:arm64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:arm64 (1.2.4-0.1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up bedtools (2.30.0+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:arm64 (2:1.0.10-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:arm64 (1.2.4-0.1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:arm64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libxslt1.1:arm64 (1.1.35-1) ... Setting up libcurl4:arm64 (7.88.1-9) ... Setting up libx11-6:arm64 (2:1.8.4-2) ... Setting up libharfbuzz0b:arm64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:arm64 (2.14.1-4) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up libpaper1:arm64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libpango-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:arm64 (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.16.0-7) ... Setting up libopenblas-dev:arm64 (0.3.21+ds-4) ... Setting up libraqm0:arm64 (0.7.0-4.1) ... Setting up sphinx-common (5.3.0-4) ... Setting up libxt6:arm64 (1:1.2.1-1.1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:arm64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:arm64 (2.3.6-1) ... Setting up libhts3:arm64 (1.16+ds-3) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up libtk8.6:arm64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lxml:arm64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-tk:arm64 (3.11.2-3) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:arm64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pandas-lib:arm64 (1.5.3+dfsg-2) ... Setting up python3-pandas (1.5.3+dfsg-2) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:arm64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:arm64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-numpydoc (1.5.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/3866/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/3866/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/python-pybedtools-0.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pybedtools_0.9.0-4_source.changes dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.9.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pybedtools-0.9.0' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pybedtools-0.9.0' python3 setup.py cythonize /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.9.0/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running build running build_py creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/stats.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/paths.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/logger.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pybedtools.include' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pybedtools.include' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pybedtools.include' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools copying pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools creating /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include copying pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data copying pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test running build_ext building 'pybedtools.cbedtools' extension INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build creating build/temp.linux-arm64-cpython-311 creating build/temp.linux-arm64-cpython-311/pybedtools creating build/temp.linux-arm64-cpython-311/pybedtools/include INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: pybedtools/cbedtools.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/pybedtools/cbedtools.o build/temp.linux-arm64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-arm64-cpython-311/pybedtools/include/fileType.o build/temp.linux-arm64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/aarch64-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so building 'pybedtools.featurefuncs' extension INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: pybedtools/featurefuncs.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-arm64-cpython-311/pybedtools/featurefuncs.o build/temp.linux-arm64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-arm64-cpython-311/pybedtools/include/fileType.o build/temp.linux-arm64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/aarch64-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so python3 setup.py develop --user /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running develop /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:146: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. warnings.warn( /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/pybedtools creating build/temp.linux-aarch64-cpython-311/pybedtools/include INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: pybedtools/cbedtools.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/cbedtools.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/pybedtools/cbedtools.o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/aarch64-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so building 'pybedtools.featurefuncs' extension INFO: C compiler: aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-Ipybedtools/include/ -I/usr/include/python3.11 -c' INFO: aarch64-linux-gnu-gcc: pybedtools/featurefuncs.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/bedFile.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/fileType.cpp INFO: aarch64-linux-gnu-gcc: pybedtools/include/gzstream.cpp In file included from pybedtools/include/bedFile.cpp:12: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ In file included from pybedtools/featurefuncs.cpp:796: pybedtools/include/bedFile.h: In function 'BIN getBin(CHRPOS, CHRPOS)': pybedtools/include/bedFile.h:92:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 92 | for (register short i = 0; i < _binLevels; ++i) { | ^ INFO: aarch64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pybedtools-0.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/pybedtools/featurefuncs.o build/temp.linux-aarch64-cpython-311/pybedtools/include/bedFile.o build/temp.linux-aarch64-cpython-311/pybedtools/include/fileType.o build/temp.linux-aarch64-cpython-311/pybedtools/include/gzstream.o -L/usr/lib/aarch64-linux-gnu -lstdc++ -lz -o /build/python-pybedtools-0.9.0/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so Creating /build/python-pybedtools-0.9.0/fakehome/.local/lib/python3.11/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.9.0 to easy-install.pth file Installed /build/python-pybedtools-0.9.0 Processing dependencies for pybedtools==0.9.0 Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.20.0 Best match: pysam 0.20.0 Adding pysam 0.20.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.9.0 python3 setup.py build_sphinx /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running build_sphinx Running Sphinx v5.3.0 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst generated new fontManager [autosummary] generating autosummary for: /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /build/python-pybedtools-0.9.0/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.add_color.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.extend_fields.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.five_prime.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.greater_than.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.less_than.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /build/python-pybedtools-0.9.0/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 157 added, 0 changed, 0 removed reading sources... 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Possible hints: * ImportError: * ModuleNotFoundError: No module named 'pybedtools.contrib.plotting.Track'; 'pybedtools.contrib.plotting' is not a package * AttributeError: type object 'Track' has no attribute 'Track' * AttributeError: type object 'Track' has no attribute 'colorbar' * ModuleNotFoundError: No module named 'Track' * KeyError: 'Track' /build/python-pybedtools-0.9.0/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy". looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 0%] 3-brief-examples writing output... [ 1%] FAQs writing output... [ 1%] autodoc_source writing output... [ 2%] autodocs/pybedtools.bedtool.BedTool writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance writing output... [ 3%] autodocs/pybedtools.bedtool.BedTool.all_hits writing output... [ 4%] autodocs/pybedtools.bedtool.BedTool.annotate writing output... 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[ 92%] pybedtools.helpers highlighting module code... [100%] pybedtools.parallel writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 9 warnings. The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pybedtools-0.9.0/debian/python3-pybedtools /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the future `np.bool` will be defined as the corresponding NumPy scalar. if not hasattr(numpy, method): /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the future `np.bytes` will be defined as the corresponding NumPy scalar. obj = getattr(themodule, elem) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py copying pybedtools/version.py -> /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' adding license file 'LICENSE.txt' writing manifest file 'pybedtools.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pybedtools.include' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pybedtools.include' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pybedtools.include' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pybedtools.include' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11 creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/version.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpython-311-aarch64-linux-gnu.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpython-311-aarch64-linux-gnu.so -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/fileType.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.h -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/include copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.pxd -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/cbedtools.cpp -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/_Window.pyx -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/contrib/plotting.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test creating /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/164.gtf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/a.links.html -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/c.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/d.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/exons.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.cram -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/genome.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.out.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue319.vcf.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/m1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/reads.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/small.fastq -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/v.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/x.bed -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/y.bam -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/data/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/genomepy_integration.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/regression_tests.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_1.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_contrib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_issues.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_pathlib.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/tfuncs.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/test/test_iter.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/__init__.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/bedtool.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/filenames.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/genome_registry.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/helpers.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/logger.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/parallel.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/paths.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/settings.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools copying /build/python-pybedtools-0.9.0/.pybuild/cpython3_3.11_pybedtools/build/pybedtools/stats.py -> /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/version.py to version.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/genomepy_integration.py to genomepy_integration.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_1.py to test_1.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_pathlib.py to test_pathlib.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/bedtool.py to bedtool.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/filenames.py to filenames.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/helpers.py to helpers.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/logger.py to logger.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/parallel.py to parallel.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/paths.py to paths.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/settings.py to settings.cpython-311.pyc byte-compiling /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools/stats.py to stats.cpython-311.pyc running install_egg_info Copying pybedtools.egg-info to /build/python-pybedtools-0.9.0/debian/python3-pybedtools/usr/lib/python3.11/dist-packages/pybedtools-0.9.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-pybedtools-0.9.0' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression make[1]: Leaving directory '/build/python-pybedtools-0.9.0' dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installexamples: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package pybedtools-bin: substitution variable ${python3:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.9.0-4_arm64.deb'. dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.9.0-4_all.deb'. dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.9.0-4_arm64.deb'. dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.9.0-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pybedtools_0.9.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pybedtools_0.9.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3866/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3866/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3866 and its subdirectories I: Current time: Tue May 16 03:00:10 +14 2023 I: pbuilder-time-stamp: 1684155610