I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 10 12:49:21 +14 2024 I: pbuilder-time-stamp: 1717973361 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [xraydb_4.4.7+ds1-3.dsc] I: copying [./xraydb_4.4.7+ds1.orig.tar.xz] I: copying [./xraydb_4.4.7+ds1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 14 22:19:15 2022 +14 gpgv: using RSA key 7F71C1E9C78E735D0360C6CCF167E43C8143B682 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./xraydb_4.4.7+ds1-3.dsc: no acceptable signature found dpkg-source: info: extracting xraydb in xraydb-4.4.7+ds1 dpkg-source: info: unpacking xraydb_4.4.7+ds1.orig.tar.xz dpkg-source: info: unpacking xraydb_4.4.7+ds1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying replace_home_dir.patch dpkg-source: info: applying skip_add_test.patch dpkg-source: info: applying sphinx-docs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/18795/tmp/hooks/D01_modify_environment starting debug: Running on codethink9-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 10 12:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/18795/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/18795/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=18795 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KLn2S0tw/pbuilderrc_wYs6 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KLn2S0tw/b2 --logfile b2/build.log --extrapackages usrmerge xraydb_4.4.7+ds1-3.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 06:49 /bin -> usr/bin I: user script /srv/workspace/pbuilder/18795/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), sqlite3, dh-python, python3-setuptools, python3-all, python3-numpy, python3-scipy, python3-sqlalchemy, python3-pytest, python3-sphinx, python3-pybtex, python3-sphinxcontrib.bibtex dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on sqlite3; however: Package sqlite3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sqlalchemy; however: Package python3-sqlalchemy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-pybtex; however: Package python3-pybtex is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.bibtex; however: Package python3-sphinxcontrib.bibtex is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxsimd-dev{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-babel{a} python3-beniget{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-gast{a} python3-greenlet{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-jinja2{a} python3-latexcodec{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-ply{a} python3-py{a} python3-pybtex{a} python3-pybtex-docutils{a} python3-pygments{a} python3-pytest{a} python3-pythran{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinxcontrib.bibtex{a} python3-sqlalchemy{a} python3-tz{a} python3-urllib3{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sqlite3{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil python3-sqlalchemy-ext wget 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 85.3 MB of archives. After unpacking 511 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sgml-base all 1.31 [15.4 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-3 [131 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 docutils-common all 0.19+dfsg-6 [127 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libopenblas0-pthread arm64 0.3.21+ds-4 [4532 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [24.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libopenblas0 arm64 0.3.21+ds-4 [32.6 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libopenblas-pthread-dev arm64 0.3.21+ds-4 [3169 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libopenblas-dev arm64 0.3.21+ds-4 [44.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1+b1 [9564 B] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1+b1 [1068 B] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libxsimd-dev arm64 8.1.0-7 [88.8 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 python-babel-localedata all 2.10.3-1 [5615 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1+b1 [1064 B] Get: 75 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1+b1 [26.2 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1+b1 [1076 B] Get: 78 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-3 [30.1 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 python3-babel all 2.10.3-1 [103 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 python3-gast all 0.5.2-2 [9364 B] Get: 83 http://deb.debian.org/debian bookworm/main arm64 python3-beniget all 0.4.1-3 [9920 B] Get: 84 http://deb.debian.org/debian bookworm/main arm64 python3-certifi all 2022.9.24-1 [153 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 python3-roman all 3.3-3 [9880 B] Get: 89 http://deb.debian.org/debian bookworm/main arm64 python3-docutils all 0.19+dfsg-6 [382 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 python3-greenlet arm64 2.0.2-1 [140 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 python3-idna all 3.3-1 [39.4 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 93 http://deb.debian.org/debian bookworm/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 94 http://deb.debian.org/debian bookworm/main arm64 python3-markupsafe arm64 2.1.2-1+b1 [13.3 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 python3-jinja2 all 3.1.2-1 [119 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 python3-latexcodec all 2.0.1-2 [18.0 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 99 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 100 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 python3-ply all 3.11-5 [65.8 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 python3-py all 1.11.0-1 [89.2 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 python3-yaml arm64 6.0-3+b2 [108 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 python3-pybtex all 0.24.0-3 [74.5 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 python3-pybtex-docutils all 1.0.2-1 [8064 B] Get: 107 http://deb.debian.org/debian bookworm/main arm64 python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 python3-pytest all 7.2.1-2 [236 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB] Get: 110 http://deb.debian.org/debian bookworm/main arm64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB] Get: 113 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 python3-snowballstemmer all 2.2.0-2 [57.8 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 sphinx-common all 5.3.0-4 [653 kB] Get: 116 http://deb.debian.org/debian bookworm/main arm64 python3-sphinx all 5.3.0-4 [549 kB] Get: 117 http://deb.debian.org/debian bookworm/main arm64 python3-sphinxcontrib.bibtex all 2.5.0-1 [30.8 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 python3-sqlalchemy all 1.4.46+ds1-1 [1008 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 sqlite3 arm64 3.40.1-2 [341 kB] Fetched 85.3 MB in 2s (49.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20366 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... 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Unpacking python3-pygments (2.14.0+dfsg-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../097-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-pythran. Preparing to unpack .../098-python3-pythran_0.11.0+ds-7_arm64.deb ... Unpacking python3-pythran (0.11.0+ds-7) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../099-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../100-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../101-python3-scipy_1.10.1-2_arm64.deb ... Unpacking python3-scipy (1.10.1-2) ... Selecting previously unselected package python3-setuptools. 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Selecting previously unselected package sqlite3. Preparing to unpack .../108-sqlite3_3.40.1-2_arm64.deb ... Unpacking sqlite3 (3.40.1-2) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libboost1.74-dev:arm64 (1.74.0+ds1-20) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up python-babel-localedata (2.10.3-1) ... Setting up libxsimd-dev:arm64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libjson-perl (4.10000-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.8-1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:arm64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up sqlite3 (3.40.1-2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:arm64 (0.3.21+ds-4) ... Setting up sphinx-common (5.3.0-4) ... Setting up libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-markupsafe (2.1.2-1+b1) ... Setting up python3-tz (2022.7.1-3) ... Setting up python3-six (1.16.0-4) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-jinja2 (3.1.2-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-snowballstemmer (2.2.0-2) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-greenlet (2.0.2-1) ... Setting up python3-idna (3.3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:arm64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-babel (2.10.3-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-alabaster (0.7.12-1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-latexcodec (2.0.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-yaml (6.0-3+b2) ... Setting up python3-sqlalchemy (1.4.46+ds1-1) ... Setting up python3-beniget (0.4.1-3) ... Setting up python3-pygments (2.14.0+dfsg-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up libpython3-all-dev:arm64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pybtex (0.24.0-3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.19+dfsg-6) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.19+dfsg-6) ... Setting up python3-pybtex-docutils (1.0.2-1) ... Setting up python3-sphinx (5.3.0-4) ... Setting up python3-sphinxcontrib.bibtex (2.5.0-1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/18795/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... I: user script /srv/workspace/pbuilder/18795/tmp/hooks/A99_set_merged_usr finished hostname: Temporary failure in name resolution I: Running cd /build/xraydb-4.4.7+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../xraydb_4.4.7+ds1-3_source.changes dpkg-buildpackage: info: source package xraydb dpkg-buildpackage: info: source version 4.4.7+ds1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Neil Williams dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from xraydb-4.4.7+ds1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/xraydb-4.4.7+ds1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean Warning: 'platforms' should be a list, got type 'tuple' running clean removing '/build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f -r python/xraydb.egg-info/ build/ python/.pytest_cache/ find . -name "*.pyc" -delete rm -f xraydb.sqlite make[1]: Leaving directory '/build/xraydb-4.4.7+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/xraydb-4.4.7+ds1' cd data_sources/ & python3 ./create_db.py & cd - / make[1]: Leaving directory '/build/xraydb-4.4.7+ds1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/xraydb-4.4.7+ds1' export http_proxy=127.0.0.1:9 dh_auto_build python3: can't open file '/build/xraydb-4.4.7+ds1/./create_db.py': [Errno 2] No such file or directory I: pybuild base:240: /usr/bin/python3 setup.py build Warning: 'platforms' should be a list, got type 'tuple' running build running build_py creating /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/materials.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/xraydb.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/xray.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/utils.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/chemparser.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/_version.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/__init__.py -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/xraydb.sqlite -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb copying xraydb/materials.dat -> /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb UPDATING /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/_version.py set /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/_version.py to '4.4.7' PYTHONPATH=python python3 -m sphinx -N -bhtml doc/ build/html Running Sphinx v5.3.0 making output directory... done checking bibtex cache... out of date parsing bibtex file /build/xraydb-4.4.7+ds1/doc/xraydb.bib... parsed 9 entries building [mo]: targets for 0 po files that are out of date building [html]: targets for 8 source files that are out of date updating environment: [new config] 8 added, 0 changed, 0 removed reading sources... [ 12%] biblio reading sources... [ 25%] dbschema reading sources... [ 37%] examples reading sources... [ 50%] index reading sources... [ 62%] installation reading sources... [ 75%] overview reading sources... [ 87%] periodictable reading sources... [100%] python looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 12%] biblio writing output... [ 25%] dbschema writing output... [ 37%] examples writing output... [ 50%] index writing output... [ 62%] installation writing output... [ 75%] overview writing output... [ 87%] periodictable writing output... [100%] python generating indices... genindex py-modindex done writing additional pages... search done copying images... [ 12%] _images/mu_elements.png copying images... [ 25%] _images/mu_components_C.png copying images... [ 37%] _images/mu_components_Fe.png copying images... [ 50%] _images/mu_water.png copying images... [ 62%] _images/mu_calcite.png copying images... [ 75%] _images/mirrors.png copying images... [ 87%] _images/darwin_widths.png copying images... [100%] _images/xray_table.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded. The HTML pages are in build/html. make[1]: Leaving directory '/build/xraydb-4.4.7+ds1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/xraydb-4.4.7+ds1' HOMEPATH=. PYTHONPATH=python pytest-3 python/tests/ -s -v ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /build/xraydb-4.4.7+ds1/python collecting ... collected 40 items python/tests/test_chem_materials.py::test_chemparse PASSED python/tests/test_chem_materials.py::test_validate_formula PASSED python/tests/test_chem_materials.py::test_get_materials PASSED python/tests/test_chem_materials.py::test_material_mu1 PASSED python/tests/test_chem_materials.py::test_material_mu2 PASSED python/tests/test_chem_materials.py::test_material_mu3 PASSED python/tests/test_chem_materials.py::test_material_mu4 PASSED python/tests/test_chem_materials.py::test_material_mu_components1 PASSED python/tests/test_chem_materials.py::test_material_mu_components2 PASSED python/tests/test_chem_materials.py::test_material_find PASSED python/tests/test_chem_materials.py::test_material_get PASSED python/tests/test_chem_materials.py::test_material_add SKIPPED (Unsa...) python/tests/test_xray.py::test_atomic_data PASSED python/tests/test_xray.py::test_edge_energies PASSED python/tests/test_xray.py::test_emission_lines PASSED python/tests/test_xray.py::test_f0 PASSED python/tests/test_xray.py::test_f0_ions PASSED python/tests/test_xray.py::test_mu_elam PASSED python/tests/test_xray.py::test_elam_coh_incoh PASSED python/tests/test_xray.py::test_mu_chantler PASSED python/tests/test_xray.py::test_f1f2_chantler PASSED python/tests/test_xray.py::test_f1f2_chantler_mo PASSED python/tests/test_xray.py::test_chantler_energies PASSED python/tests/test_xray.py::test_guess_edge PASSED python/tests/test_xray.py::test_fluor_yeild PASSED python/tests/test_xray.py::test_core_width PASSED python/tests/test_xray.py::test_xray_line PASSED python/tests/test_xray.py::test_xray_lines_levels PASSED python/tests/test_xray.py::test_ck_probability PASSED python/tests/test_xray.py::test_delta_beta PASSED python/tests/test_xray.py::test_mirror_reflectivity PASSED python/tests/test_xray.py::test_darwin_width PASSED python/tests/test_xray.py::test_ionchamber_fluxes PASSED python/tests/test_xraydb.py::test_xraydb_version PASSED python/tests/test_xraydb.py::test_molar_mass PASSED python/tests/test_xraydb.py::test_density PASSED python/tests/test_xraydb.py::test_atomic_number PASSED python/tests/test_xraydb.py::test_symbol PASSED python/tests/test_xraydb.py::test_xray_line_strengths PASSED python/tests/test_xraydb.py::test_ionization_potentials PASSED =============================== warnings summary =============================== python/xraydb/utils.py:27 /build/xraydb-4.4.7+ds1/python/xraydb/utils.py:27: DeprecationWarning: Please use `physical_constants` from the `scipy.constants` namespace, the `scipy.constants.codata` namespace is deprecated. R_ELECTRON_CM = 100.0 * consts.codata.physical_constants['classical electron radius'][0] tests/test_chem_materials.py::test_material_mu1 /build/xraydb-4.4.7+ds1/python/xraydb/xraydb.py:54: RemovedIn20Warning: Deprecated API features detected! These feature(s) are not compatible with SQLAlchemy 2.0. To prevent incompatible upgrades prior to updating applications, ensure requirements files are pinned to "sqlalchemy<2.0". Set environment variable SQLALCHEMY_WARN_20=1 to show all deprecation warnings. Set environment variable SQLALCHEMY_SILENCE_UBER_WARNING=1 to silence this message. (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9) meta = MetaData(engine) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 39 passed, 1 skipped, 2 warnings in 6.93s =================== make[1]: Leaving directory '/build/xraydb-4.4.7+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/xraydb-4.4.7+ds1' dh_auto_install I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/xraydb-4.4.7+ds1/debian/python3-xraydb Warning: 'platforms' should be a list, got type 'tuple' running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py UPDATING /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/_version.py set /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/_version.py to '4.4.7' running install_lib creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11 creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages creating /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/_version.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/materials.dat -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/xraydb.sqlite -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/__init__.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/chemparser.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/utils.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/xray.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/xraydb.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb copying /build/xraydb-4.4.7+ds1/.pybuild/cpython3_3.11_xraydb/build/xraydb/materials.py -> /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/_version.py to _version.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/__init__.py to __init__.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/chemparser.py to chemparser.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/utils.py to utils.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/xray.py to xray.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/xraydb.py to xraydb.cpython-311.pyc byte-compiling /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb/materials.py to materials.cpython-311.pyc running install_egg_info running egg_info creating xraydb.egg-info writing xraydb.egg-info/PKG-INFO writing dependency_links to xraydb.egg-info/dependency_links.txt writing requirements to xraydb.egg-info/requires.txt writing top-level names to xraydb.egg-info/top_level.txt writing manifest file 'xraydb.egg-info/SOURCES.txt' reading manifest file 'xraydb.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'INSTALL' warning: no previously-included files matching 'core.*' found under directory '*.pyc' warning: no previously-included files matching '*~' found under directory '*.pyc' warning: no previously-included files matching '*.pdf' found under directory '*.pyc' adding license file 'LICENSE' writing manifest file 'xraydb.egg-info/SOURCES.txt' Copying xraydb.egg-info to /build/xraydb-4.4.7+ds1/debian/python3-xraydb/usr/lib/python3.11/dist-packages/xraydb-4.4.7.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 make[1]: Leaving directory '/build/xraydb-4.4.7+ds1' dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-xraydb-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-xraydb-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python-xraydb-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-xraydb-doc' in '../python-xraydb-doc_4.4.7+ds1-3_all.deb'. dpkg-deb: building package 'python3-xraydb' in '../python3-xraydb_4.4.7+ds1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../xraydb_4.4.7+ds1-3_arm64.buildinfo dpkg-genchanges --build=binary -O../xraydb_4.4.7+ds1-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from xraydb-4.4.7+ds1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/18795/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/18795/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/18795 and its subdirectories I: Current time: Mon Jun 10 12:51:34 +14 2024 I: pbuilder-time-stamp: 1717973494