I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 12 13:16:05 +14 2024 I: pbuilder-time-stamp: 1705014965 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [amp_0.6.1-1.dsc] I: copying [./amp_0.6.1.orig.tar.gz] I: copying [./amp_0.6.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 28 15:09:16 2018 gpgv: using RSA key 8B7868786C33E5C64C4D0A480816B9E18C762BAD gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./amp_0.6.1-1.dsc: no acceptable signature found dpkg-source: info: extracting amp in amp-0.6.1 dpkg-source: info: unpacking amp_0.6.1.orig.tar.gz dpkg-source: info: unpacking amp_0.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile.patch dpkg-source: info: applying 03_tools.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23170/tmp/hooks/D01_modify_environment starting debug: Running on jtx1c. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 11 23:16 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/23170/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/23170/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=0f16b773eaf44bbf98f4b83fe240d0ba LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=23170 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hgBIC4a9/pbuilderrc_OFt1 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hgBIC4a9/b2 --logfile b2/build.log amp_0.6.1-1.dsc' SUDO_GID=114 SUDO_UID=108 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 5.10.0-26-arm64 #1 SMP Debian 5.10.197-1 (2023-09-29) aarch64 GNU/Linux I: ls -l /bin total 4964 -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash -rwxr-xr-x 3 root root 67144 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 2023 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 55748 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 26208 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 10 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 23 2023 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 23 2023 more -rwsr-xr-x 1 root root 38496 Mar 23 2023 mount -rwxr-xr-x 1 root root 9824 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed lrwxrwxrwx 1 root root 9 Jan 11 23:16 sh -> /bin/bash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 23 2023 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 2023 tar -rwxr-xr-x 1 root root 9800 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 23 2023 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/23170/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17881 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 11); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.9.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pexpect; however: Package python3-pexpect is not installed. pbuilder-satisfydepends-dummy depends on python3-zmq; however: Package python3-zmq is not installed. pbuilder-satisfydepends-dummy depends on openssh-server; however: Package openssh-server is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnorm1{a} libopenjp2-7{a} libpgm-5.3-0{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsodium23{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} openssh-client{a} openssh-server{a} openssh-sftp-server{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-ase{a} python3-attr{a} python3-brotli{a} python3-cffi-backend{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ptyprocess{a} python3-py{a} python3-pyparsing{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-spglib{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-zmq{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} runit-helper{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} ucf{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpam-elogind libpam-systemd lynx ncurses-term psmisc python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 104 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libcbor0.8 armhf 0.8.0-2+b1 [23.1 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libfido2-1 armhf 1.12.0-2+b1 [69.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf openssh-client armhf 1:9.2p1-2+deb12u1 [895 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf openssh-sftp-server armhf 1:9.2p1-2+deb12u1 [60.6 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf runit-helper all 2.15.2 [6520 B] Get: 12 http://deb.debian.org/debian bookworm/main armhf libwrap0 armhf 7.6.q-32 [52.6 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf openssh-server armhf 1:9.2p1-2+deb12u1 [417 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 24 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf tzdata all 2023c-5+deb12u1 [296 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2+deb12u2 [695 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 65 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 67 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [591 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130+deb12u1 [104 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 85 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libnorm1 armhf 1.5.9+dfsg-2 [185 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libpgm-5.3-0 armhf 5.3.128~dfsg-2 [156 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 111 http://deb.debian.org/debian bookworm/main armhf libpython3-all-dev armhf 3.11.2-1+b1 [1068 B] Get: 112 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 114 http://deb.debian.org/debian bookworm/main armhf libsodium23 armhf 1.0.18-1 [147 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2+deb12u1 [242 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6+deb12u1 [295 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2+deb12u1 [98.4 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2+deb12u1 [106 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libzmq5 armhf 4.3.4-6 [233 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 123 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf python3-all-dev armhf 3.11.2-1+b1 [1076 B] Get: 126 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 131 http://deb.debian.org/debian bookworm/main armhf python3-spglib armhf 2.0.2-1+b3 [192 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-3 [95.4 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B] Get: 140 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-4 [30.1 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf python3-ase all 3.22.1-3 [1354 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf python3-cffi-backend armhf 1.15.1-5+b1 [75.1 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf python3-nose all 1.3.7-9 [130 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf python3-pexpect all 4.8.0-4 [52.9 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf python3-py all 1.11.0-1 [89.2 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf python3-zmq armhf 24.0.1-4+b1 [245 kB] Fetched 104 MB in 9s (11.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17881 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../01-libedit2_3.1-20221030-2_armhf.deb ... Unpacking libedit2:armhf (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:armhf. Preparing to unpack .../02-libcbor0.8_0.8.0-2+b1_armhf.deb ... Unpacking libcbor0.8:armhf (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:armhf. Preparing to unpack .../03-libfido2-1_1.12.0-2+b1_armhf.deb ... Unpacking libfido2-1:armhf (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../04-openssh-client_1%3a9.2p1-2+deb12u1_armhf.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u1) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../05-openssh-sftp-server_1%3a9.2p1-2+deb12u1_armhf.deb ... Unpacking openssh-sftp-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../06-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../09-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package runit-helper. Preparing to unpack .../10-runit-helper_2.15.2_all.deb ... Unpacking runit-helper (2.15.2) ... Selecting previously unselected package libwrap0:armhf. Preparing to unpack .../11-libwrap0_7.6.q-32_armhf.deb ... Unpacking libwrap0:armhf (7.6.q-32) ... Selecting previously unselected package openssh-server. Preparing to unpack .../12-openssh-server_1%3a9.2p1-2+deb12u1_armhf.deb ... Unpacking openssh-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../13-libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../14-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../15-python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18585 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_armhf.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../3-libreadline8_8.2-1.3_armhf.deb ... Unpacking libreadline8:armhf (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_armhf.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19019 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2023c-5+deb12u1_all.deb ... Unpacking tzdata (2023c-5+deb12u1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../003-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../006-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../009-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../016-libtcl8.6_8.6.13+dfsg-2_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../017-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../018-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../019-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../020-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../021-fontconfig-config_2.14.1-4_armhf.deb ... 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Unpacking python3-sympy (1.11.1-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../121-python3-tz_2022.7.1-4_all.deb ... Unpacking python3-tz (2022.7.1-4) ... Selecting previously unselected package python3-fs. Preparing to unpack .../122-python3-fs_2.4.16-2_all.deb ... Unpacking python3-fs (2.4.16-2) ... Selecting previously unselected package python3-lxml:armhf. Preparing to unpack .../123-python3-lxml_4.9.2-1+b1_armhf.deb ... Unpacking python3-lxml:armhf (4.9.2-1+b1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../124-python3-lz4_4.0.2+dfsg-1+b2_armhf.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b2) ... Selecting previously unselected package unicode-data. Preparing to unpack .../125-unicode-data_15.0.0-1_all.deb ... Unpacking unicode-data (15.0.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../126-python3-fonttools_4.38.0-1+b1_armhf.deb ... 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Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up runit-helper (2.15.2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libsodium23:armhf (1.0.18-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up liblerc4:armhf (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libpgm-5.3-0:armhf (5.3.128~dfsg-2) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libcbor0.8:armhf (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libnorm1:armhf (1.5.9+dfsg-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:armhf (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jan 11 23:17:02 UTC 2024. Universal Time is now: Thu Jan 11 23:17:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.0.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.5.0-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libwrap0:armhf (7.6.q-32) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... 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Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3~deb12u1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libzmq5:armhf (4.3.4-6) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... 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Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libraqm0:armhf (0.7.0-4.1) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up openssh-sftp-server (1:9.2p1-2+deb12u1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libpython3.11:armhf (3.11.2-6) ... Setting up openssh-server (1:9.2p1-2+deb12u1) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:pMq/+8VIHIFYyb8aD/rId8bGYf738nz8gKrD9E6/USU root@i-capture-the-hostname (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:oA98R+79WhczXW92Wnmqii73j5bRhS9kEj2RLI+TwZo root@i-capture-the-hostname (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:0LTyumWhySGr5D+IExyWdhRDQyK0pTnv9Rw1iGlCt20 root@i-capture-the-hostname (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtk8.6:armhf (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up libpython3.11-dev:armhf (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:armhf (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-cffi-backend:armhf (1.15.1-5+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:armhf (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:armhf (3.11.2-3) ... Setting up python3-nose (1.3.7-9) ... Setting up python3-fs (2.4.16-2) ... Setting up libpython3-all-dev:armhf (3.11.2-1+b1) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-zmq (24.0.1-4+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-spglib (2.0.2-1+b3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:armhf (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:armhf (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-ase (3.22.1-3) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/23170/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bookworm I: user script /srv/workspace/pbuilder/23170/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/amp-0.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../amp_0.6.1-1_source.changes dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mattia Rizzolo dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running clean removing '/build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts.linux-armhf-3.11' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running config dh_auto_build -O--buildsystem=pybuild I: pybuild pybuild:307: make -C amp python3.11 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1/amp' Building for python3.11 (3.11) make -C model make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/model' make -C descriptor make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' f2py3.11 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodulesmodule.c creating /tmp/tmpi7gk3j0f/src.linux-armhf-3.11 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fortranobject.c' to sources. INFO: adding '/tmp/tmpi7gk3j0f/src.linux-armhf-3.11' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpi7gk3j0f/src.linux-armhf-3.11 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpi7gk3j0f/src.linux-armhf-3.11 INFO: adding '/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpi7gk3j0f/tmp creating /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f creating /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f/src.linux-armhf-3.11 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmpi7gk3j0f/src.linux-armhf-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: arm-linux-gnueabihf-gcc: /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodulesmodule.c INFO: arm-linux-gnueabihf-gcc: /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fortranobject.c INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating /tmp/tmpi7gk3j0f/descriptor creating /tmp/tmpi7gk3j0f/model INFO: compile options: '-I/tmp/tmpi7gk3j0f/src.linux-armhf-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpi7gk3j0f/ -I/tmp/tmpi7gk3j0f/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmpi7gk3j0f/src.linux-armhf-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpi7gk3j0f/ -I/tmp/tmpi7gk3j0f/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90 /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodulesmodule.o /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fortranobject.o /tmp/tmpi7gk3j0f/model.o /tmp/tmpi7gk3j0f/descriptor/cutoffs.o /tmp/tmpi7gk3j0f/model/neuralnetwork.o /tmp/tmpi7gk3j0f/descriptor/gaussian.o /tmp/tmpi7gk3j0f/descriptor/zernike.o /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers.o /tmp/tmpi7gk3j0f/tmp/tmpi7gk3j0f/src.linux-armhf-3.11/fmodules-f2pywrappers2.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o ./fmodules.cpython-311-arm-linux-gnueabihf.so Removing build directory /tmp/tmpi7gk3j0f make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp' I: pybuild base:240: /usr/bin/python3 setup.py build /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: f2py:> build/src.linux-armhf-3.11/amp/fmodulesmodule.c creating build creating build/src.linux-armhf-3.11 creating build/src.linux-armhf-3.11/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Post-processing... Block: fmodules Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-armhf-3.11/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90" INFO: adding 'build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp' to include_dirs. creating build/src.linux-armhf-3.11/build creating build/src.linux-armhf-3.11/build/src.linux-armhf-3.11 creating build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp INFO: adding 'build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_py creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/utilities.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression copying amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/VERSION -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.cc_test_cexpr[1089] : testing compiler expression defined(__ARM_ARCH_7__) || defined(__ARM_ARCH_7A__) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpq9uxqrz6/tmp creating /tmp/tmpq9uxqrz6/tmp/tmpq9uxqrz6 INFO: compile options: '-I/usr/include/python3.11 -c' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpq9uxqrz6/usr creating /tmp/tmpq9uxqrz6/usr/lib creating /tmp/tmpq9uxqrz6/usr/lib/python3 creating /tmp/tmpq9uxqrz6/usr/lib/python3/dist-packages creating /tmp/tmpq9uxqrz6/usr/lib/python3/dist-packages/numpy creating /tmp/tmpq9uxqrz6/usr/lib/python3/dist-packages/numpy/distutils creating /tmp/tmpq9uxqrz6/usr/lib/python3/dist-packages/numpy/distutils/checks INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=native' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-O3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1786] : check requested baseline INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mfpu=neon) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mfpu=neon-fp16 -mfp16-format=ieee) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon-fp16 -mfp16-format=ieee' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON_FP16' with flags (-mfpu=neon-fp16 -mfp16-format=ieee) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon-fp16 -mfp16-format=ieee -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mfpu=neon-vfpv4) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon-vfpv4' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON_VFPV4' with flags (-mfp16-format=ieee -mfpu=neon-vfpv4) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfp16-format=ieee -mfpu=neon-vfpv4 -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'NEON' with flags (-mfpu=neon) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mfpu=neon-fp-armv8 -march=armv8-a+simd) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfpu=neon-fp-armv8 -march=armv8-a+simd' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMD' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8-a+simd -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+dotprod) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+dotprod' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDDP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+dotprod -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+fp16) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDHP' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16 -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=armv8.2-a+fp16fml) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=armv8.2-a+fp16fml' INFO: CCompilerOpt.feature_test[1551] : testing feature 'ASIMDFHM' with flags (-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml) INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfp16-format=ieee -mfpu=neon-fp-armv8 -march=armv8.2-a+fp16+fp16fml -Werror' INFO: CCompilerOpt.__init__[1811] : initialize targets groups INFO: CCompilerOpt.__init__[1813] : parse target group simd_test INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (VSX2 XOP VSX AVX512F SSE2 SSE42 VSX3 VSX4 VX VXE VXE2 AVX512_SKX FMA4 (AVX2 FMA3)) not part of baseline or dispatch-able features INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-armhf-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-armhf-3.11/numpy/distutils/include does not exist, creating it INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'amp.fmodules' extension INFO: compiling C sources INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-armhf-cpython-311/build creating build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11 creating build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/amp creating build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/build creating build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/build/src.linux-armhf-3.11 creating build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp INFO: compile options: '-Ibuild/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-armhf-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' INFO: arm-linux-gnueabihf-gcc: build/src.linux-armhf-3.11/amp/fmodulesmodule.c INFO: arm-linux-gnueabihf-gcc: build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp/fortranobject.c INFO: compiling Fortran 90 module sources creating build/temp.linux-armhf-cpython-311/amp INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating build/temp.linux-armhf-cpython-311/amp/model creating build/temp.linux-armhf-cpython-311/amp/descriptor INFO: compile options: '-Ibuild/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-armhf-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-armhf-cpython-311/amp -Ibuild/temp.linux-armhf-cpython-311/amp' INFO: gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: amp/descriptor/cutoffs.f90 INFO: gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-Ibuild/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-armhf-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-armhf-cpython-311/amp -Ibuild/temp.linux-armhf-cpython-311/amp' INFO: gfortran:f90: amp/descriptor/gaussian.f90 INFO: gfortran:f90: amp/descriptor/zernike.f90 INFO: gfortran:f90: build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90 build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:141:63: 141 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 272 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:202:9: 202 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 325 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:187:70: 187 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 312 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:235:68: 235 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 354 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:220:69: 220 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 341 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:170:55: 170 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 297 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:157:56: 157 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 286 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:129:62: 129 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 262 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:388:44: 388 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 412 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:398:50: 398 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 421 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/amp/fmodulesmodule.o build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp/fortranobject.o build/temp.linux-armhf-cpython-311/amp/model/neuralnetwork.o build/temp.linux-armhf-cpython-311/amp/descriptor/cutoffs.o build/temp.linux-armhf-cpython-311/amp/model.o build/temp.linux-armhf-cpython-311/amp/descriptor/gaussian.o build/temp.linux-armhf-cpython-311/amp/descriptor/zernike.o build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers.o build/temp.linux-armhf-cpython-311/build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/arm-linux-gnueabihf -lgfortran -o /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-arm-linux-gnueabihf.so INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: armhf Compiler : gcc CPU baseline : Requested : 'min' Enabled : none Flags : none Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP ASIMDDP ASIMDFHM Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-armhf-cpython-311/ccompiler_opt_cache_ext.py debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-amp/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/amp-0.6.1/debian/python3-amp /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: adding 'build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-armhf-3.11/build/src.linux-armhf-3.11/amp' to include_dirs. INFO: adding 'build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-armhf-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_py running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.__init__[813] : load cache from file -> /build/reproducible-path/amp-0.6.1/build/temp.linux-armhf-cpython-311/ccompiler_opt_cache_ext.py INFO: CCompilerOpt.__init__[824] : hit the file cache INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext running install_lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11 creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/VERSION -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-arm-linux-gnueabihf.so -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/utilities.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/tflow.py to tflow.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/example.py to example.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py to zernike.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/utilities.py to utilities.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/analysis.py to analysis.cpython-311.pyc running install_egg_info running egg_info creating amp_atomistics.egg-info writing amp_atomistics.egg-info/PKG-INFO writing dependency_links to amp_atomistics.egg-info/dependency_links.txt writing requirements to amp_atomistics.egg-info/requires.txt writing top-level names to amp_atomistics.egg-info/top_level.txt writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/egg_info.py:655: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. warnings.warn( reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' Copying amp_atomistics.egg-info to /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp_atomistics-0.6.1.egg-info Skipping SOURCES.txt running install_scripts running install_clib INFO: customize UnixCCompiler INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: armhf Compiler : gcc CPU baseline : Requested : 'min' Enabled : none Flags : none Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : NEON NEON_FP16 NEON_VFPV4 ASIMD ASIMDHP ASIMDDP ASIMDFHM Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-armhf-cpython-311/ccompiler_opt_cache_ext.py I: pybuild pybuild:333: cp -r '/build/reproducible-path/amp-0.6.1/tests' '/build/reproducible-path/amp-0.6.1/debian/python3-amp//usr/lib/python3.11/dist-packages/amp' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_python3 W: dh_python3 fs:147: Paths differ: debian/python3-amp/usr/lib/python3.11/dist-packages/amp/fmodules.cpython-311-arm-linux-gnueabihf.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-311-arm-linux-gnueabihf.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence dh_numpy3 dh_fixperms make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-amp-dbgsym' in '../python3-amp-dbgsym_0.6.1-1_armhf.deb'. dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../amp_0.6.1-1_armhf.buildinfo dpkg-genchanges --build=binary -O../amp_0.6.1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/23170/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/23170/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23170 and its subdirectories I: Current time: Fri Jan 12 13:20:54 +14 2024 I: pbuilder-time-stamp: 1705015254