I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 13 19:40:24 +14 2024 I: pbuilder-time-stamp: 1718257224 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [cyvcf2_0.30.18-1.dsc] I: copying [./cyvcf2_0.30.18.orig.tar.gz] I: copying [./cyvcf2_0.30.18-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 6 23:53:45 2022 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.30.18-1.dsc: no acceptable signature found dpkg-source: info: extracting cyvcf2 in cyvcf2-0.30.18 dpkg-source: info: unpacking cyvcf2_0.30.18.orig.tar.gz dpkg-source: info: unpacking cyvcf2_0.30.18-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_htslib_link_dependency.patch dpkg-source: info: applying i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49670/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 13 19:40 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/49670/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/49670/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=b430459452554dfab00aff67df454b6d LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=49670 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6nBRNihv/pbuilderrc_UiVJ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6nBRNihv/b2 --logfile b2/build.log --extrapackages usrmerge cyvcf2_0.30.18-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 24 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash -rwxr-xr-x 1 root root 137160 Sep 21 2022 date -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd -rwxr-xr-x 1 root root 108940 Sep 21 2022 df -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln -rwxr-xr-x 1 root root 55600 Mar 24 2023 login -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 24 2023 more -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 13 19:40 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty -rwsr-xr-x 1 root root 83492 Mar 24 2023 su -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch -rwxr-xr-x 1 root root 34664 Sep 21 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/49670/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, cython3, python3-setuptools, python3-all-dev, python3-numpy, python3-coloredlogs, python3-click, python3-pytest, libssl-dev, libcurl4-gnutls-dev | libcurl4-openssl-dev, libhts-dev, libbz2-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-coloredlogs; however: Package python3-coloredlogs is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-openssl-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-openssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-dev{a} python3-distutils{a} python3-humanfriendly{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 53.3 MB of archives. After unpacking 210 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 12 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 cython3 i386 0.29.32-2+b1 [1297 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libbz2-dev i386 1.0.8-5+b1 [31.5 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-9 [527 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libdeflate-dev i386 1.14-1 [53.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libexpat1-dev i386 2.5.0-1 [158 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 liblzma-dev i386 5.4.1-0.2 [272 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libhts-dev i386 1.16+ds-3 [1585 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libpython3.11 i386 3.11.2-6 [2013 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libpython3.11-dev i386 3.11.2-6 [4906 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libpython3-dev i386 3.11.2-1+b1 [9580 B] Get: 76 http://deb.debian.org/debian bookworm/main i386 libpython3-all-dev i386 3.11.2-1+b1 [1068 B] Get: 77 http://deb.debian.org/debian bookworm/main i386 libssl-dev i386 3.0.8-1 [2487 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 79 http://deb.debian.org/debian bookworm/main i386 python3.11-dev i386 3.11.2-6 [615 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 python3-dev i386 3.11.2-1+b1 [26.2 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 python3-all-dev i386 3.11.2-1+b1 [1072 B] Get: 82 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 python3-colorama all 0.4.6-2 [36.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 python3-click all 8.1.3-2 [92.2 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 python3-humanfriendly all 10.0-3 [85.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 python3-coloredlogs all 15.0.1-1 [47.4 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Fetched 53.3 MB in 7s (7510 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20368 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_i386.deb ... 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Preparing to unpack .../75-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../76-python3-more-itertools_8.10.0-2_all.deb ... Unpacking python3-more-itertools (8.10.0-2) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../77-python3-pkg-resources_66.1.1-1_all.deb ... Unpacking python3-pkg-resources (66.1.1-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../78-python3-numpy_1%3a1.24.2-1_i386.deb ... Unpacking python3-numpy (1:1.24.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../79-python3-packaging_23.0-1_all.deb ... Unpacking python3-packaging (23.0-1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../80-python3-pluggy_1.0.0+repack-1_all.deb ... Unpacking python3-pluggy (1.0.0+repack-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../81-python3-py_1.11.0-1_all.deb ... Unpacking python3-py (1.11.0-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../82-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../83-python3-setuptools_66.1.1-1_all.deb ... Unpacking python3-setuptools (66.1.1-1) ... Setting up libhtscodecs2:i386 (1.3.0-4) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.5.0-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libssl-dev:i386 (3.0.8-1) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:i386 (5.4.1-0.2) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libdeflate-dev:i386 (1.14-1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libbz2-dev:i386 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up libpython3.11:i386 (3.11.2-6) ... Setting up libhts-dev:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-humanfriendly (10.0-3) ... Setting up libpython3.11-dev:i386 (3.11.2-6) ... Setting up cython3 (0.29.32-2+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-coloredlogs (15.0.1-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up libpython3-dev:i386 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-colorama (0.4.6-2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-click (8.1.3-2) ... Setting up libpython3-all-dev:i386 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/49670/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/49670/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/cyvcf2-0.30.18/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cyvcf2_0.30.18-1_source.changes dpkg-buildpackage: info: source package cyvcf2 dpkg-buildpackage: info: source version 0.30.18-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from cyvcf2-0.30.18/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird betreten dh_clean rm -rf cyvcf2.egg-info cyvcf2/cyvcf2.c __o.vcf find . -name "*.so" -delete make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird verlassen debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config Compiling cyvcf2/cyvcf2.pyx because it changed. [1/1] Cythonizing cyvcf2/cyvcf2.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/__main__.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/__init__.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cli.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 creating /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests running egg_info creating cyvcf2.egg-info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt writing manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'htslib/*.c' warning: no files found matching 'htslib/*.h' warning: no files found matching 'htslib/htslib/*.h' warning: no files found matching 'htslib/cram/*.c' warning: no files found matching 'htslib/cram/*.h' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' copying cyvcf2/cyvcf2.c -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.c -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/helpers.h -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/relatedness.h -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2 copying cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/decomposed.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/issue_198.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/seg.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-genotypes.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-invalid-header.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.isa.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.mnp.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.bcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests copying cyvcf2/tests/test_gt_bases.vcf.gz -> /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests running build_ext building 'cyvcf2.cyvcf2' extension creating build creating build/temp.linux-i386-cpython-311 creating build/temp.linux-i386-cpython-311/cyvcf2 i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cyvcf2-0.30.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -Ihtslib -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c cyvcf2/cyvcf2.c -o build/temp.linux-i386-cpython-311/cyvcf2/cyvcf2.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from cyvcf2/cyvcf2.c:790: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ cyvcf2/cyvcf2.c: In function ‘__pyx_pf_6cyvcf2_6cyvcf2_3VCF_8seqnames___get__’: cyvcf2/cyvcf2.c:14510:18: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14510 | __pyx_v_cnames = bcf_hdr_seqnames(__pyx_v_self->hdr, (&__pyx_v_n)); | ^ cyvcf2/cyvcf2.c:14619:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14619 | __pyx_v_cnames = bcf_index_seqnames(__pyx_v_self->hidx, __pyx_v_self->hdr, (&__pyx_v_n)); | ^ cyvcf2/cyvcf2.c:14702:22: warning: assignment to ‘char **’ from incompatible pointer type ‘const char **’ [-Wincompatible-pointer-types] 14702 | __pyx_v_cnames = tbx_seqnames(__pyx_v_self->idx, (&__pyx_v_n)); | ^ i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/cyvcf2-0.30.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Icyvcf2 -Ihtslib -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c cyvcf2/helpers.c -o build/temp.linux-i386-cpython-311/cyvcf2/helpers.o -Wno-sign-compare -Wno-unused-function -Wno-strict-prototypes -Wno-unused-result -Wno-discarded-qualifiers cyvcf2/helpers.c: In function ‘as_gts’: cyvcf2/helpers.c:7:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 7 | int missing= 0, found=0; | ^~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/cyvcf2-0.30.18=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-cpython-311/cyvcf2/cyvcf2.o build/temp.linux-i386-cpython-311/cyvcf2/helpers.o -L/usr/lib/i386-linux-gnu -lz -lbz2 -llzma -lcurl -lssl -lhts -lcrypt -o /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.cpython-311-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird betreten dh_auto_test I: pybuild base:240: cd /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/cyvcf2-0.30.18, configfile: setup.cfg collected 99 items cyvcf2/tests/test_cli.py . [ 1%] cyvcf2/tests/test_hemi.py . [ 2%] cyvcf2/tests/test_reader.py ............................................ [ 46%] ......................................s... [ 88%] cyvcf2/tests/test_writer.py ........... [100%] ======================== 98 passed, 1 skipped in 1.10s ========================= # clean up after testing find . -name out.vcf -delete make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird verlassen create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cyvcf2/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/cyvcf2-0.30.18/debian/python3-cyvcf2 running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing cyvcf2.egg-info/PKG-INFO writing dependency_links to cyvcf2.egg-info/dependency_links.txt writing entry points to cyvcf2.egg-info/entry_points.txt writing requirements to cyvcf2.egg-info/requires.txt writing top-level names to cyvcf2.egg-info/top_level.txt reading manifest file 'cyvcf2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'htslib/*.c' warning: no files found matching 'htslib/*.h' warning: no files found matching 'htslib/htslib/*.h' warning: no files found matching 'htslib/cram/*.c' warning: no files found matching 'htslib/cram/*.h' adding license file 'LICENSE' writing manifest file 'cyvcf2.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11 creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.pyx -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.pxd -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/relatedness.h -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/helpers.h -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__main__.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.c -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__init__.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/helpers.c -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__pycache__/__init__.cpython-311.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/__pycache__/cli.cpython-311.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__pycache__ creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/no-seq-len.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-hemi.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/bug.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/o.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/issue_198.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/seg.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.isa.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.bug.117.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_writer.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz.tbi -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-alt-repr.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_cli.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/issue_44.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-genotypes.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-strict-gt-option-flag.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.comp_het.3.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-haploidX.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__init__.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/empty.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_reader.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/decomposed.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_gt_alt_freqs.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.mnp.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.snpeff.bcf.csi -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-multiallelic-homozygous-alt.vcf.gz.tbi -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-diff.csi -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/no-seq-names.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test.vcf.gz.tbi -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests creating /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_reader.cpython-311-pytest-7.2.1.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/__init__.cpython-311.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_cli.cpython-311-pytest-7.2.1.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_writer.cpython-311-pytest-7.2.1.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/__pycache__/test_hemi.cpython-311-pytest-7.2.1.pyc -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__pycache__ copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_hemi.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-format-string.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test-invalid-header.vcf -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_gt_bases.vcf.gz -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cli.py -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 copying /build/cyvcf2-0.30.18/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/cyvcf2.cpython-311-i386-linux-gnu.so -> /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2 byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__main__.py to __main__.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/__init__.py to __init__.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_writer.py to test_writer.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_reader.py to test_reader.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/tests/test_hemi.py to test_hemi.cpython-311.pyc byte-compiling /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2/cli.py to cli.cpython-311.pyc running install_egg_info Copying cyvcf2.egg-info to /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/cyvcf2-0.30.18.egg-info Skipping SOURCES.txt running install_scripts Installing cyvcf2 script to /build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/bin debian/rules override_dh_install make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird betreten dh_numpy3 dh_install make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird verlassen dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird betreten PATH=$PATH:/build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/bin \ PYTHONPATH=/build/cyvcf2-0.30.18/debian/python3-cyvcf2/usr/lib/python3.11/dist-packages/ \ help2man --no-info \ --name="fast parsing of VCF and BCF including region-queries" \ --version-string=0.30.18 cyvcf2 > debian/cyvcf2.1 dh_installman make[1]: Verzeichnis „/build/cyvcf2-0.30.18“ wird verlassen dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: Paket »python3-cyvcf2« wird in »../python3-cyvcf2_0.30.18-1_i386.deb« gebaut. dpkg-deb: Paket »python3-cyvcf2-dbgsym« wird in »../python3-cyvcf2-dbgsym_0.30.18-1_i386.deb« gebaut. dpkg-genbuildinfo --build=binary -O../cyvcf2_0.30.18-1_i386.buildinfo dpkg-genchanges --build=binary -O../cyvcf2_0.30.18-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from cyvcf2-0.30.18/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/49670/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/49670/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49670 and its subdirectories I: Current time: Thu Jun 13 19:41:52 +14 2024 I: pbuilder-time-stamp: 1718257312