I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 14 17:55:12 +14 2024 I: pbuilder-time-stamp: 1718337312 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fastaq_3.17.0-5.dsc] I: copying [./fastaq_3.17.0.orig.tar.gz] I: copying [./fastaq_3.17.0-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 9 03:48:22 2022 +14 gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastaq_3.17.0-5.dsc: no acceptable signature found dpkg-source: info: extracting fastaq in fastaq-3.17.0 dpkg-source: info: unpacking fastaq_3.17.0.orig.tar.gz dpkg-source: info: unpacking fastaq_3.17.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying tests I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 14 17:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.15(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DIRSTACK=() DISTRIBUTION=bookworm EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=cdff670713bc472b9e6211e23714b8e7 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10082 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/pbuilderrc_dfrD --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wUHXslai/b2 --logfile b2/build.log --extrapackages usrmerge fastaq_3.17.0-5.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 24 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 21 2022 cat -rwxr-xr-x 1 root root 79816 Sep 21 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 21 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 21 2022 chown -rwxr-xr-x 1 root root 162024 Sep 21 2022 cp -rwxr-xr-x 1 root root 136916 Jan 6 2023 dash -rwxr-xr-x 1 root root 137160 Sep 21 2022 date -rwxr-xr-x 1 root root 100364 Sep 21 2022 dd -rwxr-xr-x 1 root root 108940 Sep 21 2022 df -rwxr-xr-x 1 root root 162152 Sep 21 2022 dir -rwxr-xr-x 1 root root 87760 Mar 24 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 21 2022 echo -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 21 2022 false -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 24 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 20 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 21 2022 ln -rwxr-xr-x 1 root root 55600 Mar 24 2023 login -rwxr-xr-x 1 root root 162152 Sep 21 2022 ls -rwxr-xr-x 1 root root 214568 Mar 24 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 21 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 21 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 21 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 24 2023 more -rwsr-xr-x 1 root root 58912 Mar 24 2023 mount -rwxr-xr-x 1 root root 13856 Mar 24 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 21 2022 mv lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 21 2022 pwd lrwxrwxrwx 1 root root 4 Apr 24 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 21 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 21 2022 rm -rwxr-xr-x 1 root root 51080 Sep 21 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 3 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 6 2023 sed lrwxrwxrwx 1 root root 9 Jun 14 17:55 sh -> /bin/bash -rwxr-xr-x 1 root root 38760 Sep 21 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 21 2022 stty -rwsr-xr-x 1 root root 83492 Mar 24 2023 su -rwxr-xr-x 1 root root 38792 Sep 21 2022 sync -rwxr-xr-x 1 root root 598456 Apr 7 2023 tar -rwxr-xr-x 1 root root 13860 Nov 3 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 21 2022 touch -rwxr-xr-x 1 root root 34664 Sep 21 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 24 2023 umount -rwxr-xr-x 1 root root 38760 Sep 21 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 21 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 24 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/10082/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-pkg-resources, python3-pytest, samtools, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pkg-resources; however: Package python3-pkg-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-attr{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 29.3 MB of archives. After unpacking 110 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 12 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 33 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 35 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 62 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 samtools i386 1.16.1-1 [637 kB] Fetched 29.3 MB in 8s (3500 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_i386.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19934 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20368 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_i386.deb ... 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Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up samtools (1.16.1-1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pytest (7.2.1-2) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... usrmerge is already the newest version (35). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/10082/tmp/hooks/A99_set_merged_usr starting Re-configuring usrmerge... removed '/etc/unsupported-skip-usrmerge-conversion' The system has been successfully converted. I: user script /srv/workspace/pbuilder/10082/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/fastaq-3.17.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastaq_3.17.0-5_source.changes dpkg-buildpackage: info: source package fastaq dpkg-buildpackage: info: source version 3.17.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fastaq-3.17.0' rm -rf build .pybuild doc pyfastaq.egg-info find . -name __pycache__ | xargs rm -rf rm -rf /build/fastaq-3.17.0/debian/man make[1]: Leaving directory '/build/fastaq-3.17.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/fastaq.substvars debian/files rm -fr -- debian/fastaq/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/fastaq-3.17.0' dh_python3 D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:204: processing package fastaq... D: dh_python3 fs:400: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D=set(); R=[]; S=[]; E=[], B=[]; RT=[] dh_auto_build pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/utils.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/caf.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/tasks.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/intervals.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq copying pyfastaq/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq creating /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/version.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners copying pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners running build_scripts creating build creating build/scripts-3.11 copying and adjusting scripts/fastaq -> build/scripts-3.11 changing mode of build/scripts-3.11/fastaq from 644 to 755 mkdir /build/fastaq-3.17.0/doc cd /build/fastaq-3.17.0/doc make[1]: Leaving directory '/build/fastaq-3.17.0' rm -f debian/fastaq.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/fastaq-3.17.0' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {dir}; {interpreter} -m pytest pyfastaq/tests/" dh_auto_test pybuild --test -i python{version} -p 3.11 I: pybuild base:240: cd /build/fastaq-3.17.0; python3.11 -m pytest pyfastaq/tests/ ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/fastaq-3.17.0 collected 125 items pyfastaq/tests/caf_test.py . [ 0%] pyfastaq/tests/intervals_test.py ............. [ 11%] pyfastaq/tests/sequences_test.py ....................................... [ 42%] ........... [ 51%] pyfastaq/tests/tasks_test.py ........................................... [ 85%] .............. [ 96%] pyfastaq/tests/utils_test.py .... [100%] =============================== warnings summary =============================== pyfastaq/sequences.py:37 /build/fastaq-3.17.0/pyfastaq/sequences.py:37: DeprecationWarning: invalid escape sequence '\s' phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') pyfastaq/sequences.py:38 /build/fastaq-3.17.0/pyfastaq/sequences.py:38: DeprecationWarning: invalid escape sequence '\s' gbk_regex = re.compile('^LOCUS\s+\S') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 125 passed, 2 warnings in 0.39s ======================== rm -fr -- /tmp/dh-xdg-rundir-XdFNQlGd make[1]: Leaving directory '/build/fastaq-3.17.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/fastaq.substvars rm -fr -- debian/.debhelper/generated/fastaq/ debian/fastaq/ debian/tmp/ dh_auto_install --destdir=debian/fastaq/ -O--buildsystem=pybuild install -m0755 -d /build/fastaq-3.17.0/debian/fastaq pybuild --install -i python{version} -p 3.11 --dest-dir /build/fastaq-3.17.0/debian/fastaq I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/fastaq-3.17.0/debian/fastaq running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_scripts running install_lib creating /build/fastaq-3.17.0/debian/fastaq/usr creating /build/fastaq-3.17.0/debian/fastaq/usr/lib creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11 creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq creating /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/chunker.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/enumerate_names.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/split_by_base_count.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/capillary_to_pairs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_random_subset.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fasta.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/count_sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/caf_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_fake_qual.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/add_indels.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/replace_bases.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_ids.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/make_random_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/reverse_complement.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_mira_xml.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/merge.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/fasta_to_fastq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_orfs_gff.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_Ns_at_end.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/trim_ends.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/expand_nucleotides.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/version.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/get_seq_flanking_gaps.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/search_for_seq.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/deinterleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/acgtn_only.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_boulderio.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/interleave.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_tiling_bam.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sequence_trim.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/scaffolds_to_contigs.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_size.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/translate.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_perfect_reads.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/filter.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/to_unique_by_id.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/strip_illumina_suffix.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/runners/sort_by_name.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/utils.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/caf.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/tasks.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/intervals.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/genetic_codes.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/sequences.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq copying /build/fastaq-3.17.0/.pybuild/cpython3_3.11_fastaq/build/pyfastaq/__init__.py -> /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/chunker.py to chunker.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/enumerate_names.py to enumerate_names.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/split_by_base_count.py to split_by_base_count.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/capillary_to_pairs.py to capillary_to_pairs.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_random_subset.py to to_random_subset.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fasta.py to to_fasta.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/count_sequences.py to count_sequences.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/caf_to_fastq.py to caf_to_fastq.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_fake_qual.py to to_fake_qual.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/add_indels.py to add_indels.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/replace_bases.py to replace_bases.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_ids.py to get_ids.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/make_random_contigs.py to make_random_contigs.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/reverse_complement.py to reverse_complement.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_mira_xml.py to to_mira_xml.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_contigs.py to trim_contigs.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/merge.py to merge.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/fasta_to_fastq.py to fasta_to_fastq.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_orfs_gff.py to to_orfs_gff.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_Ns_at_end.py to trim_Ns_at_end.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/trim_ends.py to trim_ends.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/expand_nucleotides.py to expand_nucleotides.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/version.py to version.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py to get_seq_flanking_gaps.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/search_for_seq.py to search_for_seq.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/deinterleave.py to deinterleave.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/acgtn_only.py to acgtn_only.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_boulderio.py to to_boulderio.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/interleave.py to interleave.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_tiling_bam.py to to_tiling_bam.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/__init__.py to __init__.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sequence_trim.py to sequence_trim.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py to scaffolds_to_contigs.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_size.py to sort_by_size.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/translate.py to translate.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_perfect_reads.py to to_perfect_reads.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/filter.py to filter.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/to_unique_by_id.py to to_unique_by_id.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/strip_illumina_suffix.py to strip_illumina_suffix.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/runners/sort_by_name.py to sort_by_name.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/utils.py to utils.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/caf.py to caf.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/tasks.py to tasks.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/intervals.py to intervals.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/genetic_codes.py to genetic_codes.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/sequences.py to sequences.cpython-311.pyc byte-compiling /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info creating pyfastaq.egg-info writing pyfastaq.egg-info/PKG-INFO writing dependency_links to pyfastaq.egg-info/dependency_links.txt writing top-level names to pyfastaq.egg-info/top_level.txt writing manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest file 'pyfastaq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pyfastaq.egg-info/SOURCES.txt' Copying pyfastaq.egg-info to /build/fastaq-3.17.0/debian/fastaq/usr/lib/python3.11/dist-packages/pyfastaq-3.17.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/fastaq-3.17.0/debian/fastaq/usr/bin copying build/scripts-3.11/fastaq -> /build/fastaq-3.17.0/debian/fastaq/usr/bin changing mode of /build/fastaq-3.17.0/debian/fastaq/usr/bin/fastaq to 755 dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/copyright debian/fastaq/usr/share/doc/fastaq/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/fastaq/usr/share/doc/fastaq install -p -m0644 debian/.debhelper/generated/fastaq/dh_installchangelogs.dch.trimmed debian/fastaq/usr/share/doc/fastaq/changelog.Debian rm -f debian/fastaq.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/fastaq-3.17.0' mkdir -p /build/fastaq-3.17.0/debian/man PYTHONPATH=. help2man -N -o debian/man/fastaq.1 \ -n 'FASTA and FASTQ file manipulation tools' \ --no-discard-stderr \ --version-string=`PYTHONPATH=. scripts/fastaq version` scripts/fastaq sed -i 's/.SH DESCRIPTION/.SH DESCRIPTION\\n.nf/' debian/man/fastaq.1 scripts/fastaq 2>&1 | tail -n +13 | debian/make_man dh_installman -- install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-caf_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-count_sequences.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-expand_nucleotides.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_ids.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-make_random_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-merge.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-reverse_complement.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sequence_trim.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-split_by_base_count.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fake_qual.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_orfs_gff.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_tiling_bam.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-trim_Ns_at_end.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq-version.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 install -m0755 -d debian/fastaq/usr/share/man/man1/ install -p -m0644 ./debian/man/fastaq.1 debian/fastaq/usr/share/man/man1/fastaq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 man-recode --to-code UTF-8 --suffix .dh-new debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq.1 mv debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 mv debian/fastaq/usr/share/man/man1/fastaq-chunker.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-chunker.1 mv debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-capillary_to_pairs.1 debian/fastaq/usr/share/man/man1/fastaq-chunker.1 debian/fastaq/usr/share/man/man1/fastaq-count_sequences.1 mv debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 mv debian/fastaq/usr/share/man/man1/fastaq-add_indels.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 mv debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-acgtn_only.1 debian/fastaq/usr/share/man/man1/fastaq-add_indels.1 debian/fastaq/usr/share/man/man1/fastaq-caf_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 mv debian/fastaq/usr/share/man/man1/fastaq-interleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-interleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 debian/fastaq/usr/share/man/man1/fastaq-interleave.1 debian/fastaq/usr/share/man/man1/fastaq-make_random_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 mv debian/fastaq/usr/share/man/man1/fastaq-filter.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-filter.1 mv debian/fastaq/usr/share/man/man1/fastaq-get_ids.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-fasta_to_fastq.1 debian/fastaq/usr/share/man/man1/fastaq-filter.1 debian/fastaq/usr/share/man/man1/fastaq-get_ids.1 mv debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-strip_illumina_suffix.1 debian/fastaq/usr/share/man/man1/fastaq-to_boulderio.1 debian/fastaq/usr/share/man/man1/fastaq-to_fake_qual.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 mv debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 mv debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-sort_by_name.1 debian/fastaq/usr/share/man/man1/fastaq-sort_by_size.1 debian/fastaq/usr/share/man/man1/fastaq-split_by_base_count.1 mv debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 mv debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 mv debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-deinterleave.1 debian/fastaq/usr/share/man/man1/fastaq-enumerate_names.1 debian/fastaq/usr/share/man/man1/fastaq-expand_nucleotides.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_perfect_reads.1 debian/fastaq/usr/share/man/man1/fastaq-to_random_subset.1 debian/fastaq/usr/share/man/man1/fastaq-to_tiling_bam.1 mv debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 mv debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-scaffolds_to_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-search_for_seq.1 debian/fastaq/usr/share/man/man1/fastaq-sequence_trim.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_fasta.1 debian/fastaq/usr/share/man/man1/fastaq-to_mira_xml.1 debian/fastaq/usr/share/man/man1/fastaq-to_orfs_gff.1 mv debian/fastaq/usr/share/man/man1/fastaq-merge.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-merge.1 mv debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 mv debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-merge.1 debian/fastaq/usr/share/man/man1/fastaq-replace_bases.1 debian/fastaq/usr/share/man/man1/fastaq-reverse_complement.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 mv debian/fastaq/usr/share/man/man1/fastaq-version.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-version.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-trim_contigs.1 debian/fastaq/usr/share/man/man1/fastaq-trim_ends.1 debian/fastaq/usr/share/man/man1/fastaq-version.1 mv debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 mv debian/fastaq/usr/share/man/man1/fastaq-translate.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-translate.1 mv debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1.dh-new debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 chmod 0644 -- debian/fastaq/usr/share/man/man1/fastaq-to_unique_by_id.1 debian/fastaq/usr/share/man/man1/fastaq-translate.1 debian/fastaq/usr/share/man/man1/fastaq-trim_Ns_at_end.1 make[1]: Leaving directory '/build/fastaq-3.17.0' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=fastaq, binary packages=['fastaq'] D: dh_python3 dh_python3:204: processing package fastaq... D: dh_python3 fs:52: moving files from debian/fastaq/usr/lib/python3.11/dist-packages to debian/fastaq/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package fastaq details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package fastaq D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/fastaq chmod a-x usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 gzip -9nf usr/share/doc/fastaq/changelog.Debian usr/share/man/man1/fastaq-acgtn_only.1 usr/share/man/man1/fastaq-add_indels.1 usr/share/man/man1/fastaq-caf_to_fastq.1 usr/share/man/man1/fastaq-capillary_to_pairs.1 usr/share/man/man1/fastaq-chunker.1 usr/share/man/man1/fastaq-count_sequences.1 usr/share/man/man1/fastaq-deinterleave.1 usr/share/man/man1/fastaq-enumerate_names.1 usr/share/man/man1/fastaq-expand_nucleotides.1 usr/share/man/man1/fastaq-fasta_to_fastq.1 usr/share/man/man1/fastaq-filter.1 usr/share/man/man1/fastaq-get_ids.1 usr/share/man/man1/fastaq-get_seq_flanking_gaps.1 usr/share/man/man1/fastaq-interleave.1 usr/share/man/man1/fastaq-make_random_contigs.1 usr/share/man/man1/fastaq-merge.1 usr/share/man/man1/fastaq-replace_bases.1 usr/share/man/man1/fastaq-reverse_complement.1 usr/share/man/man1/fastaq-scaffolds_to_contigs.1 usr/share/man/man1/fastaq-search_for_seq.1 usr/share/man/man1/fastaq-sequence_trim.1 usr/share/man/man1/fastaq-sort_by_name.1 usr/share/man/man1/fastaq-sort_by_size.1 usr/share/man/man1/fastaq-split_by_base_count.1 usr/share/man/man1/fastaq-strip_illumina_suffix.1 usr/share/man/man1/fastaq-to_boulderio.1 usr/share/man/man1/fastaq-to_fake_qual.1 usr/share/man/man1/fastaq-to_fasta.1 usr/share/man/man1/fastaq-to_mira_xml.1 usr/share/man/man1/fastaq-to_orfs_gff.1 usr/share/man/man1/fastaq-to_perfect_reads.1 usr/share/man/man1/fastaq-to_random_subset.1 usr/share/man/man1/fastaq-to_tiling_bam.1 usr/share/man/man1/fastaq-to_unique_by_id.1 usr/share/man/man1/fastaq-translate.1 usr/share/man/man1/fastaq-trim_Ns_at_end.1 usr/share/man/man1/fastaq-trim_contigs.1 usr/share/man/man1/fastaq-trim_ends.1 usr/share/man/man1/fastaq-version.1 usr/share/man/man1/fastaq.1 cd '/build/fastaq-3.17.0' dh_fixperms -O--buildsystem=pybuild find debian/fastaq ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/fastaq/usr/share/doc -type f -a -true -a ! -regex 'debian/fastaq/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/fastaq/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/fastaq/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/fastaq/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/postinst cat debian/fastaq.postinst.debhelper >> debian/fastaq/DEBIAN/postinst chmod 0755 -- debian/fastaq/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/fastaq/DEBIAN/prerm cat debian/fastaq.prerm.debhelper >> debian/fastaq/DEBIAN/prerm chmod 0755 -- debian/fastaq/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN echo misc:Depends= >> debian/fastaq.substvars echo misc:Pre-Depends= >> debian/fastaq.substvars dpkg-gencontrol -pfastaq -ldebian/changelog -Tdebian/fastaq.substvars -Pdebian/fastaq chmod 0644 -- debian/fastaq/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/fastaq/DEBIAN cd debian/fastaq >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/fastaq/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/fastaq .. dpkg-deb: building package 'fastaq' in '../fastaq_3.17.0-5_all.deb'. dpkg-genbuildinfo --build=binary -O../fastaq_3.17.0-5_i386.buildinfo dpkg-genchanges --build=binary -O../fastaq_3.17.0-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/10082/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10082/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10082 and its subdirectories I: Current time: Fri Jun 14 17:55:54 +14 2024 I: pbuilder-time-stamp: 1718337354