I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 9 00:50:44 +14 2024 I: pbuilder-time-stamp: 1707389444 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bagel_1.2.2-2.dsc] I: copying [./bagel_1.2.2.orig.tar.gz] I: copying [./bagel_1.2.2-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.k38I7coh/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 13 02:50:06 2021 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bagel_1.2.2-2.dsc dpkg-source: info: extracting bagel in bagel-1.2.2 dpkg-source: info: unpacking bagel_1.2.2.orig.tar.gz dpkg-source: info: unpacking bagel_1.2.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_testcases.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/249802/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' lrwxrwxrwx 1 root root 4 Feb 9 00:50 /bin/sh -> bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/249802/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/249802/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7ab8633cd3a34f97a55712bec88c54f8 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=249802 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sGhRU8OE/pbuilderrc_LcdP --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sGhRU8OE/b2 --logfile b2/build.log bagel_1.2.2-2.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.0.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.0.12-1~bpo11+1 (2022-12-19) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jan 21 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jan 21 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jan 21 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 21 2022 more -rwsr-xr-x 1 root root 55528 Jan 21 2022 mount -rwxr-xr-x 1 root root 18664 Jan 21 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Feb 9 00:50 sh -> bash lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 21 2022 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 21 2022 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 21 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/249802/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19704 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-autoreconf; however: Package dh-autoreconf is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmpich-dev; however: Package libmpich-dev is not installed. pbuilder-satisfydepends-dummy depends on libxc-dev; however: Package libxc-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} hwloc-nox{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libhwloc15{a} libicu-dev{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libmpich-dev{a} libmpich12{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libslurm36{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxc-dev{a} libxc5{a} libxml2{a} m4{a} man-db{a} media-types{a} mpich{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libhwloc-plugins libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 82.9 MB of archives. After unpacking 478 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u3 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 hwloc-nox amd64 2.4.1+dfsg-1 [190 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libblas-dev amd64 3.9.0-3 [161 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libboost-python1.74.0 amd64 1.74.0-9 [313 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libboost-python1.74-dev amd64 1.74.0-9 [336 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libboost-regex-dev amd64 1.74.0.3 [4600 B] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libboost-test1.74.0 amd64 1.74.0-9 [472 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libboost-test1.74-dev amd64 1.74.0-9 [547 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libboost-test-dev amd64 1.74.0.3 [4368 B] Get: 79 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3 [4247 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libmpich12 amd64 3.4.1-5~deb11u1 [1987 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libslurm36 amd64 20.11.7+really20.11.4-2+deb11u1 [667 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 mpich amd64 3.4.1-5~deb11u1 [219 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libmpich-dev amd64 3.4.1-5~deb11u1 [2343 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libxc5 amd64 4.3.4-2 [2001 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libxc-dev amd64 4.3.4-2 [3633 kB] Fetched 82.9 MB in 1s (65.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libboost-test1.74.0:amd64 (1.74.0-9) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-9) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libmpich12:amd64 (3.4.1-5~deb11u1) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:amd64 (10.2.1-6) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-python1.74.0 (1.74.0-9) ... Setting up libboost-test1.74-dev:amd64 (1.74.0-9) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u3) ... Setting up libblas-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libxc5:amd64 (4.3.4-2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up hwloc-nox (2.4.1+dfsg-1) ... Setting up libxc-dev (4.3.4-2) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-test-dev:amd64 (1.74.0.3) ... Setting up liblapack-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up gfortran-10 (10.2.1-6) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up libboost-regex-dev:amd64 (1.74.0.3) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up mpich (3.4.1-5~deb11u1) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up libmpich-dev:amd64 (3.4.1-5~deb11u1) ... update-alternatives: using /usr/include/x86_64-linux-gnu/mpich to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-13+deb11u5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/249802/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/249802/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/bagel-1.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bagel_1.2.2-2_source.changes dpkg-buildpackage: info: source package bagel dpkg-buildpackage: info: source version 1.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --max-parallel=1 --with autoreconf debian/rules override_dh_auto_clean make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_clean rm -rf /build/bagel-1.2.2/src/testsuite make[1]: Leaving directory '/build/bagel-1.2.2' dh_autoreconf_clean -O--max-parallel=1 dh_clean -O--max-parallel=1 debian/rules build dh build --max-parallel=1 --with autoreconf dh_update_autotools_config -O--max-parallel=1 dh_autoreconf -O--max-parallel=1 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:39: installing './config.guess' configure.ac:39: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bagel-1.2.2' if [ -f /proc/meminfo ]; then cat /proc/meminfo; fi MemTotal: 49330748 kB MemFree: 3757252 kB MemAvailable: 4775484 kB Buffers: 76476 kB Cached: 40634000 kB SwapCached: 73796 kB Active: 26596640 kB Inactive: 17531292 kB Active(anon): 25965008 kB Inactive(anon): 16943372 kB Active(file): 631632 kB Inactive(file): 587920 kB Unevictable: 64 kB Mlocked: 64 kB SwapTotal: 205520888 kB SwapFree: 200814216 kB Zswap: 0 kB Zswapped: 0 kB Dirty: 1396 kB Writeback: 0 kB AnonPages: 3340256 kB Mapped: 241584 kB Shmem: 39490924 kB KReclaimable: 394444 kB Slab: 956724 kB SReclaimable: 394444 kB SUnreclaim: 562280 kB KernelStack: 9432 kB PageTables: 17240 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 230186260 kB Committed_AS: 54495264 kB VmallocTotal: 34359738367 kB VmallocUsed: 102820 kB VmallocChunk: 0 kB Percpu: 184064 kB HardwareCorrupted: 0 kB AnonHugePages: 344064 kB ShmemHugePages: 0 kB ShmemPmdMapped: 0 kB FileHugePages: 0 kB FilePmdMapped: 0 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB Hugetlb: 0 kB DirectMap4k: 319328 kB DirectMap2M: 25894912 kB DirectMap1G: 26214400 kB dh_auto_configure -- \ --datadir=/usr/share/bagel \ --libdir=/usr/lib/bagel \ --enable-static \ --disable-shared \ --with-boost \ --with-boost-libdir=/usr/lib/x86_64-linux-gnu \ --with-libxc=yes \ --with-mpi=openmpi \ --disable-scalapack \ --enable-smith ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-boost-libdir=/usr/lib/x86_64-linux-gnu --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for python... no checking for python2... no checking for python3... /usr/bin/python3 checking for python version... 3.9 checking for python platform... linux checking for python script directory... ${prefix}/lib/python3.9/site-packages checking for python extension module directory... ${exec_prefix}/lib/python3.9/site-packages checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none ..openmpi requested.. checking for mpicc... mpicc checking for mpicxx... mpicxx checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) none checking whether we are using the GNU C++ compiler... (cached) yes checking whether mpicxx accepts -g... (cached) yes checking dependency style of mpicxx... (cached) none checking whether mpicxx supports C++11 features by default... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for boostlib >= 1.53... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Unit_Test_Framework library is available... yes configure: WARNING: BOOST_CPPFLAGS -I/usr/include checking whether the Boost::Serialization library is available... yes checking for exit in -lboost_serialization... yes checking xc.h usability... yes checking xc.h presence... yes checking for xc.h... yes checking for main in -lxc... yes checking for zgemm3m_... no checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/util/Makefile config.status: creating src/util/input/Makefile config.status: creating src/util/io/Makefile config.status: creating src/util/parallel/Makefile config.status: creating src/util/math/Makefile config.status: creating src/asd/multisite/Makefile config.status: creating src/asd/dimer/Makefile config.status: creating src/asd/dmrg/Makefile config.status: creating src/asd/orbital/Makefile config.status: creating src/asd/Makefile config.status: creating src/wfn/Makefile config.status: creating src/grad/Makefile config.status: creating src/integral/Makefile config.status: creating src/scf/Makefile config.status: creating src/df/Makefile config.status: creating src/prop/Makefile config.status: creating src/smith/Makefile config.status: creating src/molecule/Makefile config.status: creating src/pt2/Makefile config.status: creating src/ci/Makefile config.status: creating src/ci/ciutil/Makefile config.status: creating src/ci/fci/Makefile config.status: creating src/ci/zfci/Makefile config.status: creating src/ci/ras/Makefile config.status: creating src/response/Makefile config.status: creating src/multi/Makefile config.status: creating src/multi/casscf/Makefile config.status: creating src/multi/zcasscf/Makefile config.status: creating src/mat1e/Makefile config.status: creating src/opt/Makefile config.status: creating src/basis/Makefile config.status: creating bagel_config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/bagel-1.2.2' dh_auto_build -O--max-parallel=1 make -j1 make[1]: Entering directory '/build/bagel-1.2.2' make all-recursive make[2]: Entering directory '/build/bagel-1.2.2' Making all in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making all in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making all in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o process.lo process.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c process.cc -o process.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o mpi_interface.lo mpi_interface.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c mpi_interface.cc -o mpi_interface.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o rmawindow.lo rmawindow.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c rmawindow.cc -o rmawindow.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o resources.lo resources.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c resources.cc -o resources.o /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o libbagel_parallel.la process.lo mpi_interface.lo rmawindow.lo resources.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_parallel.a process.o mpi_interface.o rmawindow.o resources.o libtool: link: ranlib .libs/libbagel_parallel.a libtool: link: ( cd ".libs" && rm -f "libbagel_parallel.la" && ln -s "../libbagel_parallel.la" "libbagel_parallel.la" ) make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making all in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moldenin.lo moldenin.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moldenin.cc -o moldenin.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moldenout.lo moldenout.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moldenout.cc -o moldenout.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time 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compute_mep.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c compute_mep.cc -o compute_mep.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o update.lo update.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c update.cc -o update.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o qmmm.lo qmmm.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c qmmm.cc -o qmmm.o qmmm.cc: In member function 'void bagel::QMMM_Tinker::edit_tinker_input(std::shared_ptr) const': qmmm.cc:39:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | system("mv -f tinkin.xyz tinkin.xyz.old"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc: In member function 'virtual void bagel::QMMM_Tinker::edit_input(std::shared_ptr) const': qmmm.cc:73:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | chdir("tinker1"); | ~~~~~^~~~~~~~~~~ qmmm.cc:77:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:78:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qmmm"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:82:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | system(pp.c_str()); | ~~~~~~^~~~~~~~~~~~ qmmm.cc:85:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 85 | chdir("../"); | ~~~~~^~~~~~~ qmmm.cc:87:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | chdir("tinker2"); | ~~~~~^~~~~~~~~~~ qmmm.cc:91:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:92:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qm"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:96:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | system(pp.c_str()); | ~~~~~~^~~~~~~~~~~~ qmmm.cc:99:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("../"); | ~~~~~^~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o libbagel_opt.la optimize.lo opt.lo get_grad.lo constraint.lo compute_opt.lo compute_mep.lo update.lo qmmm.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_opt.a optimize.o opt.o get_grad.o constraint.o compute_opt.o compute_mep.o update.o qmmm.o libtool: 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caspt2/CASPT2_residualq.o caspt2/CASPT2_densityq.o caspt2/CASPT2_tasks1.o caspt2/CASPT2_tasks2.o caspt2/CASPT2_tasks3.o caspt2/CASPT2_tasks4.o caspt2/CASPT2_tasks5.o caspt2/CASPT2_tasks6.o caspt2/CASPT2_tasks7.o caspt2/CASPT2_tasks8.o caspt2/CASPT2_tasks9.o caspt2/CASPT2_tasks10.o caspt2/CASPT2_tasks11.o caspt2/CASPT2_tasks12.o caspt2/CASPT2_tasks13.o caspt2/CASPT2_tasks14.o caspt2/CASPT2_tasks15.o caspt2/CASPT2_tasks16.o caspt2/CASPT2_gen1.o caspt2/CASPT2_gen2.o caspt2/CASPT2_gen3.o caspt2/CASPT2_gen4.o caspt2/CASPT2_gen5.o caspt2/CASPT2_gen6.o caspt2/CASPT2_gen7.o caspt2/CASPT2_gen8.o caspt2/CASPT2_gen9.o caspt2/CASPT2_gen10.o caspt2/CASPT2_gen11.o caspt2/CASPT2_gen12.o caspt2/CASPT2_gen13.o caspt2/CASPT2_gen14.o caspt2/CASPT2_gen15.o caspt2/CASPT2_gen16.o caspt2/CASPT2_contract.o caspt2/SPCASPT2.o caspt2/SPCASPT2_gamma.o caspt2/SPCASPT2_densityq.o caspt2/SPCASPT2_density1q.o caspt2/SPCASPT2_gen1.o caspt2/SPCASPT2_gen2.o caspt2/SPCASPT2_gen3.o caspt2/SPCASPT2_gen4.o caspt2/SPCASPT2_gen5.o caspt2/SPCASPT2_gen6.o caspt2/SPCASPT2_tasks1.o caspt2/SPCASPT2_tasks2.o caspt2/SPCASPT2_tasks3.o caspt2/SPCASPT2_tasks4.o caspt2/SPCASPT2_tasks5.o caspt2/SPCASPT2_tasks6.o caspt2/MSCASPT2.o caspt2/MSCASPT2_gamma.o caspt2/MSCASPT2_densityq.o caspt2/MSCASPT2_density1q.o caspt2/MSCASPT2_density2q.o caspt2/MSCASPT2_deciq.o caspt2/MSCASPT2_deci2q.o caspt2/MSCASPT2_deci3q.o caspt2/MSCASPT2_deci4q.o caspt2/MSCASPT2_gen1.o caspt2/MSCASPT2_gen2.o caspt2/MSCASPT2_gen3.o caspt2/MSCASPT2_gen4.o caspt2/MSCASPT2_gen5.o caspt2/MSCASPT2_gen6.o caspt2/MSCASPT2_gen7.o caspt2/MSCASPT2_gen8.o caspt2/MSCASPT2_gen9.o caspt2/MSCASPT2_gen10.o caspt2/MSCASPT2_gen11.o caspt2/MSCASPT2_gen12.o caspt2/MSCASPT2_tasks1.o caspt2/MSCASPT2_tasks2.o caspt2/MSCASPT2_tasks3.o caspt2/MSCASPT2_tasks4.o caspt2/MSCASPT2_tasks5.o caspt2/MSCASPT2_tasks6.o caspt2/MSCASPT2_tasks7.o caspt2/MSCASPT2_tasks8.o caspt2/MSCASPT2_tasks9.o caspt2/MSCASPT2_tasks10.o caspt2/MSCASPT2_tasks11.o caspt2/MSCASPT2_tasks12.o caspt2/MSCASPT2_shift.o caspt2/MSCASPT2_contract.o mrci/MRCI.o mrci/MRCI_gamma.o mrci/MRCI_sourceq.o mrci/MRCI_normq.o mrci/MRCI_residualq1.o mrci/MRCI_residualq2.o mrci/MRCI_residualq3.o mrci/MRCI_residualq4.o mrci/MRCI_residualq5.o mrci/MRCI_residualq6.o mrci/MRCI_residualq7.o mrci/MRCI_residualq8.o mrci/MRCI_residualq9.o mrci/MRCI_tasks1.o mrci/MRCI_tasks2.o mrci/MRCI_tasks3.o mrci/MRCI_tasks4.o mrci/MRCI_tasks5.o mrci/MRCI_tasks6.o mrci/MRCI_tasks7.o mrci/MRCI_tasks8.o mrci/MRCI_tasks9.o mrci/MRCI_tasks10.o mrci/MRCI_tasks11.o mrci/MRCI_tasks12.o mrci/MRCI_tasks13.o mrci/MRCI_tasks14.o mrci/MRCI_tasks15.o mrci/MRCI_tasks16.o mrci/MRCI_tasks17.o mrci/MRCI_tasks18.o mrci/MRCI_tasks19.o mrci/MRCI_tasks20.o mrci/MRCI_gen1.o mrci/MRCI_gen2.o mrci/MRCI_gen3.o mrci/MRCI_gen4.o mrci/MRCI_gen5.o mrci/MRCI_gen6.o mrci/MRCI_gen7.o mrci/MRCI_gen8.o mrci/MRCI_gen9.o mrci/MRCI_gen10.o mrci/MRCI_gen11.o mrci/MRCI_gen12.o mrci/MRCI_gen13.o mrci/MRCI_gen14.o mrci/MRCI_gen15.o mrci/MRCI_gen16.o mrci/MRCI_gen17.o mrci/MRCI_gen18.o mrci/MRCI_gen19.o mrci/MRCI_gen20.o relcaspt2/RelCASPT2.o relcaspt2/RelCASPT2_gamma.o relcaspt2/RelCASPT2_residualq.o relcaspt2/RelCASPT2_normq.o relcaspt2/RelCASPT2_sourceq.o relcaspt2/RelCASPT2_gen1.o relcaspt2/RelCASPT2_gen2.o relcaspt2/RelCASPT2_gen3.o relcaspt2/RelCASPT2_gen4.o relcaspt2/RelCASPT2_gen5.o relcaspt2/RelCASPT2_gen6.o relcaspt2/RelCASPT2_tasks1.o relcaspt2/RelCASPT2_tasks2.o relcaspt2/RelCASPT2_tasks3.o relcaspt2/RelCASPT2_tasks4.o relcaspt2/RelCASPT2_tasks5.o relcaspt2/RelCASPT2_tasks6.o casa/CASA.o casa/CASA_gamma.o casa/CASA_residualq.o casa/CASA_sourceq.o casa/CASA_gen1.o casa/CASA_gen2.o casa/CASA_gen3.o casa/CASA_gen4.o casa/CASA_gen5.o casa/CASA_gen6.o casa/CASA_tasks1.o casa/CASA_tasks2.o casa/CASA_tasks3.o casa/CASA_tasks4.o casa/CASA_tasks5.o casa/CASA_tasks6.o relcasa/RelCASA.o relcasa/RelCASA_gamma.o relcasa/RelCASA_residualq.o relcasa/RelCASA_sourceq.o relcasa/RelCASA_gen1.o relcasa/RelCASA_gen2.o relcasa/RelCASA_gen3.o relcasa/RelCASA_gen4.o relcasa/RelCASA_gen5.o relcasa/RelCASA_gen6.o relcasa/RelCASA_tasks1.o relcasa/RelCASA_tasks2.o relcasa/RelCASA_tasks3.o relcasa/RelCASA_tasks4.o relcasa/RelCASA_tasks5.o relcasa/RelCASA_tasks6.o relmrci/RelMRCI.o relmrci/RelMRCI_gamma.o relmrci/RelMRCI_sourceq.o relmrci/RelMRCI_normq.o relmrci/RelMRCI_residualq1.o relmrci/RelMRCI_residualq2.o relmrci/RelMRCI_residualq3.o relmrci/RelMRCI_residualq4.o relmrci/RelMRCI_residualq5.o relmrci/RelMRCI_residualq6.o relmrci/RelMRCI_tasks1.o relmrci/RelMRCI_tasks2.o relmrci/RelMRCI_tasks3.o relmrci/RelMRCI_tasks4.o relmrci/RelMRCI_tasks5.o relmrci/RelMRCI_tasks6.o relmrci/RelMRCI_tasks7.o relmrci/RelMRCI_tasks8.o relmrci/RelMRCI_tasks9.o relmrci/RelMRCI_tasks10.o relmrci/RelMRCI_tasks11.o relmrci/RelMRCI_tasks12.o relmrci/RelMRCI_tasks13.o relmrci/RelMRCI_tasks14.o relmrci/RelMRCI_tasks15.o relmrci/RelMRCI_tasks16.o relmrci/RelMRCI_gen1.o relmrci/RelMRCI_gen2.o relmrci/RelMRCI_gen3.o relmrci/RelMRCI_gen4.o relmrci/RelMRCI_gen5.o relmrci/RelMRCI_gen6.o relmrci/RelMRCI_gen7.o relmrci/RelMRCI_gen8.o relmrci/RelMRCI_gen9.o relmrci/RelMRCI_gen10.o relmrci/RelMRCI_gen11.o relmrci/RelMRCI_gen12.o relmrci/RelMRCI_gen13.o relmrci/RelMRCI_gen14.o relmrci/RelMRCI_gen15.o relmrci/RelMRCI_gen16.o libtool: link: ranlib .libs/libbagel_smith.a libtool: link: ( cd ".libs" && rm -f "libbagel_smith.la" && ln -s "../libbagel_smith.la" "libbagel_smith.la" ) make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making all in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o multipole.lo multipole.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c multipole.cc -o multipole.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o hyperfine.lo hyperfine.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c hyperfine.cc -o hyperfine.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o momentum.lo momentum.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c momentum.cc -o momentum.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o momentum_london.lo momentum_london.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c momentum_london.cc -o momentum_london.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o momentum_point.lo momentum_point.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c momentum_point.cc -o momentum_point.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o current.lo current.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c current.cc -o current.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o overlap_point.lo overlap_point.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c overlap_point.cc -o overlap_point.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moprint.lo moprint.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moprint.cc -o moprint.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o sphmultipole.lo sphmultipole.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c sphmultipole.cc -o sphmultipole.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o pseudospin/stevensop.lo pseudospin/stevensop.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c pseudospin/stevensop.cc -o pseudospin/stevensop.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o pseudospin/pseudospin.lo pseudospin/pseudospin.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c pseudospin/pseudospin.cc -o pseudospin/pseudospin.o /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o libbagel_prop.la multipole.lo hyperfine.lo momentum.lo momentum_london.lo momentum_point.lo current.lo overlap_point.lo moprint.lo sphmultipole.lo pseudospin/stevensop.lo pseudospin/pseudospin.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_prop.a multipole.o hyperfine.o momentum.o momentum_london.o momentum_point.o current.o overlap_point.o moprint.o sphmultipole.o pseudospin/stevensop.o pseudospin/pseudospin.o libtool: link: ranlib .libs/libbagel_prop.a libtool: link: ( cd ".libs" && rm -f "libbagel_prop.la" && ln -s "../libbagel_prop.la" "libbagel_prop.la" ) make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making all in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making all in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o cistring.lo cistring.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c cistring.cc -o cistring.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o cistringset.lo cistringset.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c cistringset.cc -o cistringset.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o determinants_base.lo determinants_base.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c determinants_base.cc -o determinants_base.o /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o libbagel_ciutil.la cistring.lo cistringset.lo determinants_base.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_ciutil.a cistring.o cistringset.o determinants_base.o libtool: link: ranlib .libs/libbagel_ciutil.a libtool: link: ( cd ".libs" && rm -f "libbagel_ciutil.la" && ln -s "../libbagel_ciutil.la" "libbagel_ciutil.la" ) make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making all in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o fci_base.lo fci_base.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. 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giao/relhcore_london.lo giao/reloverlap_london.lo giao/small1e_london.lo giao/angmom_london.lo rel/reloverlap.lo rel/relhcore.lo rel/breitint.lo rel/reldipole.lo rel/small1e.lo rel/spinint.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_mat1e.a matrix1e.o kinetic.o nai.o overlap.o hcore.o dkhcore.o dipolematrix.o sohcore.o fermicontact.o spindipole.o angmom.o cap.o giao/zhcore.o giao/zkinetic.o giao/zoverlap.o giao/relhcore_london.o giao/reloverlap_london.o giao/small1e_london.o giao/angmom_london.o rel/reloverlap.o rel/relhcore.o rel/breitint.o rel/reldipole.o rel/small1e.o rel/spinint.o libtool: link: ranlib .libs/libbagel_mat1e.a libtool: link: ( cd ".libs" && rm -f "libbagel_mat1e.la" && ln -s "../libbagel_mat1e.la" "libbagel_mat1e.la" ) make[4]: Leaving directory '/build/bagel-1.2.2/src/mat1e' Making all in basis make[4]: Entering directory '/build/bagel-1.2.2/src/basis' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o main.o main.cc /bin/sh ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o run_bagel.lo run_bagel.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c run_bagel.cc -o run_bagel.o /bin/sh ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o static.lo static.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c static.cc -o static.o /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o libbagel.la -rpath /usr/lib/bagel run_bagel.lo static.lo opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: (cd .libs/libbagel.lax/libbagel_opt.a && ar x "/build/bagel-1.2.2/src/opt/.libs/libbagel_opt.a") libtool: link: (cd .libs/libbagel.lax/libbagel_zcasscf.a && ar x "/build/bagel-1.2.2/src/multi/zcasscf/.libs/libbagel_zcasscf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_zfci.a && ar x "/build/bagel-1.2.2/src/ci/zfci/.libs/libbagel_zfci.a") libtool: link: (cd .libs/libbagel.lax/libbagel_fci.a && ar x "/build/bagel-1.2.2/src/ci/fci/.libs/libbagel_fci.a") libtool: link: (cd .libs/libbagel.lax/libbagel_ras.a && ar x "/build/bagel-1.2.2/src/ci/ras/.libs/libbagel_ras.a") libtool: link: (cd .libs/libbagel.lax/libbagel_response.a && ar x "/build/bagel-1.2.2/src/response/.libs/libbagel_response.a") libtool: link: (cd .libs/libbagel.lax/libbagel_scf.a && ar x "/build/bagel-1.2.2/src/scf/.libs/libbagel_scf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_casscf.a && ar x "/build/bagel-1.2.2/src/multi/casscf/.libs/libbagel_casscf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_pt2.a && ar x "/build/bagel-1.2.2/src/pt2/.libs/libbagel_pt2.a") libtool: link: (cd .libs/libbagel.lax/libbagel_grad.a && ar x "/build/bagel-1.2.2/src/grad/.libs/libbagel_grad.a") libtool: link: (cd .libs/libbagel.lax/libbagel_wfn.a && ar x "/build/bagel-1.2.2/src/wfn/.libs/libbagel_wfn.a") libtool: link: (cd .libs/libbagel.lax/libbagel_df.a && ar x "/build/bagel-1.2.2/src/df/.libs/libbagel_df.a") libtool: link: (cd .libs/libbagel.lax/libbagel_smith.a && ar x "/build/bagel-1.2.2/src/smith/.libs/libbagel_smith.a") libtool: link: (cd .libs/libbagel.lax/libbagel_prop.a && ar x "/build/bagel-1.2.2/src/prop/.libs/libbagel_prop.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd.a && ar x "/build/bagel-1.2.2/src/asd/.libs/libbagel_asd.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd_dmrg.a && ar x "/build/bagel-1.2.2/src/asd/dmrg/.libs/libbagel_asd_dmrg.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd_orbital.a && ar x "/build/bagel-1.2.2/src/asd/orbital/.libs/libbagel_asd_orbital.a") libtool: link: (cd .libs/libbagel.lax/libbagel_dimer.a && ar x "/build/bagel-1.2.2/src/asd/dimer/.libs/libbagel_dimer.a") libtool: link: (cd .libs/libbagel.lax/libbagel_multisite.a && ar x "/build/bagel-1.2.2/src/asd/multisite/.libs/libbagel_multisite.a") libtool: link: (cd .libs/libbagel.lax/libbagel_ciutil.a && ar x "/build/bagel-1.2.2/src/ci/ciutil/.libs/libbagel_ciutil.a") libtool: link: (cd .libs/libbagel.lax/libbagel_mat1e.a && ar x "/build/bagel-1.2.2/src/mat1e/.libs/libbagel_mat1e.a") libtool: link: (cd .libs/libbagel.lax/libbagel_integral.a && ar x "/build/bagel-1.2.2/src/integral/.libs/libbagel_integral.a") libtool: link: (cd .libs/libbagel.lax/libbagel_molecule.a && ar x "/build/bagel-1.2.2/src/molecule/.libs/libbagel_molecule.a") libtool: link: (cd .libs/libbagel.lax/libbagel_io.a && ar x "/build/bagel-1.2.2/src/util/io/.libs/libbagel_io.a") libtool: link: (cd .libs/libbagel.lax/libbagel_util.a && ar x "/build/bagel-1.2.2/src/util/.libs/libbagel_util.a") libtool: link: (cd .libs/libbagel.lax/libbagel_parallel.a && ar x "/build/bagel-1.2.2/src/util/parallel/.libs/libbagel_parallel.a") libtool: link: (cd .libs/libbagel.lax/libbagel_math.a && ar x "/build/bagel-1.2.2/src/util/math/.libs/libbagel_math.a") libtool: link: (cd .libs/libbagel.lax/libbagel_input.a && ar x "/build/bagel-1.2.2/src/util/input/.libs/libbagel_input.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libbagel.lax/libbagel_ras.a/determinants.o .libs/libbagel.lax/lt1-determinants.o || cp .libs/libbagel.lax/libbagel_ras.a/determinants.o .libs/libbagel.lax/lt1-determinants.o libtool: link: ln .libs/libbagel.lax/libbagel_asd_dmrg.a/form_sigma.o .libs/libbagel.lax/lt2-form_sigma.o || cp .libs/libbagel.lax/libbagel_asd_dmrg.a/form_sigma.o .libs/libbagel.lax/lt2-form_sigma.o libtool: link: ar cr .libs/libbagel.a run_bagel.o static.o .libs/libbagel.lax/libbagel_opt.a/compute_mep.o .libs/libbagel.lax/libbagel_opt.a/compute_opt.o .libs/libbagel.lax/libbagel_opt.a/constraint.o .libs/libbagel.lax/libbagel_opt.a/get_grad.o .libs/libbagel.lax/libbagel_opt.a/opt.o .libs/libbagel.lax/libbagel_opt.a/optimize.o .libs/libbagel.lax/libbagel_opt.a/qmmm.o .libs/libbagel.lax/libbagel_opt.a/update.o .libs/libbagel.lax/libbagel_zcasscf.a/zcasnoopt.o .libs/libbagel.lax/libbagel_zcasscf.a/zcasscf.o .libs/libbagel.lax/libbagel_zcasscf.a/zcassecond.o .libs/libbagel.lax/libbagel_zcasscf.a/zcassecond_compute.o .libs/libbagel.lax/libbagel_zcasscf.a/zqvec.o .libs/libbagel.lax/libbagel_zfci.a/fci_london.o .libs/libbagel.lax/libbagel_zfci.a/jop_london.o .libs/libbagel.lax/libbagel_zfci.a/reldvec.o .libs/libbagel.lax/libbagel_zfci.a/relfci.o .libs/libbagel.lax/libbagel_zfci.a/reljop.o .libs/libbagel.lax/libbagel_zfci.a/relspace.o .libs/libbagel.lax/libbagel_zfci.a/zharrison.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_compute.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_denom.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_io.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_parallel.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_rdm.o .libs/libbagel.lax/libbagel_zfci.a/zmofile.o .libs/libbagel.lax/libbagel_fci.a/civec.o .libs/libbagel.lax/libbagel_fci.a/determinants.o .libs/libbagel.lax/libbagel_fci.a/dist_form_sigma.o .libs/libbagel.lax/libbagel_fci.a/distcivec.o .libs/libbagel.lax/libbagel_fci.a/distfci.o .libs/libbagel.lax/libbagel_fci.a/distfci_rdm.o .libs/libbagel.lax/libbagel_fci.a/dvec.o .libs/libbagel.lax/libbagel_fci.a/fci.o .libs/libbagel.lax/libbagel_fci.a/fci_base.o .libs/libbagel.lax/libbagel_fci.a/fci_io.o .libs/libbagel.lax/libbagel_fci.a/fci_rdm.o .libs/libbagel.lax/libbagel_fci.a/fci_rdm_alpha.o .libs/libbagel.lax/libbagel_fci.a/fci_rdmderiv.o .libs/libbagel.lax/libbagel_fci.a/harrison_compute.o .libs/libbagel.lax/libbagel_fci.a/harrison_denom.o .libs/libbagel.lax/libbagel_fci.a/knowles_compute.o .libs/libbagel.lax/libbagel_fci.a/knowles_denom.o .libs/libbagel.lax/libbagel_fci.a/modelci.o .libs/libbagel.lax/libbagel_fci.a/mofile.o .libs/libbagel.lax/libbagel_fci.a/space.o .libs/libbagel.lax/libbagel_ras.a/apply_operator.o .libs/libbagel.lax/libbagel_ras.a/civec_spinop.o .libs/libbagel.lax/libbagel_ras.a/civector.o .libs/libbagel.lax/libbagel_ras.a/civector_impl.o .libs/libbagel.lax/lt1-determinants.o .libs/libbagel.lax/libbagel_ras.a/form_sigma.o .libs/libbagel.lax/libbagel_ras.a/rasci.o .libs/libbagel.lax/libbagel_ras.a/rasci_denom.o .libs/libbagel.lax/libbagel_ras.a/sparse_ij.o .libs/libbagel.lax/libbagel_response.a/cis.o .libs/libbagel.lax/libbagel_scf.a/atomicdensities.o .libs/libbagel.lax/libbagel_scf.a/box.o .libs/libbagel.lax/libbagel_scf.a/dfock.o .libs/libbagel.lax/libbagel_scf.a/dftgrid.o .libs/libbagel.lax/libbagel_scf.a/dirac.o .libs/libbagel.lax/libbagel_scf.a/diracgrad.o .libs/libbagel.lax/libbagel_scf.a/fmm.o .libs/libbagel.lax/libbagel_scf.a/fock.o .libs/libbagel.lax/libbagel_scf.a/fock_base.o .libs/libbagel.lax/libbagel_scf.a/fock_london.o .libs/libbagel.lax/libbagel_scf.a/grid.o .libs/libbagel.lax/libbagel_scf.a/ks.o .libs/libbagel.lax/libbagel_scf.a/lebedev.o .libs/libbagel.lax/libbagel_scf.a/rhf.o .libs/libbagel.lax/libbagel_scf.a/rhf_london.o .libs/libbagel.lax/libbagel_scf.a/rohf.o .libs/libbagel.lax/libbagel_scf.a/scf_base.o .libs/libbagel.lax/libbagel_scf.a/slater2e.o .libs/libbagel.lax/libbagel_scf.a/sofock.o .libs/libbagel.lax/libbagel_scf.a/soscf.o .libs/libbagel.lax/libbagel_scf.a/uhf.o .libs/libbagel.lax/libbagel_casscf.a/casgrad.o .libs/libbagel.lax/libbagel_casscf.a/casscf.o .libs/libbagel.lax/libbagel_casscf.a/cassecond.o .libs/libbagel.lax/libbagel_casscf.a/qvec.o .libs/libbagel.lax/libbagel_casscf.a/rotfile.o .libs/libbagel.lax/libbagel_pt2.a/dmp2.o .libs/libbagel.lax/libbagel_pt2.a/mp2.o .libs/libbagel.lax/libbagel_pt2.a/mp2cache.o .libs/libbagel.lax/libbagel_pt2.a/mp2grad.o .libs/libbagel.lax/libbagel_pt2.a/nevpt2.o .libs/libbagel.lax/libbagel_grad.a/cpcasscf.o .libs/libbagel.lax/libbagel_grad.a/cphf.o 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.libs/libbagel.lax/libbagel_df.a/complexdf_base.o .libs/libbagel.lax/libbagel_df.a/df.o .libs/libbagel.lax/libbagel_df.a/dfblock.o .libs/libbagel.lax/libbagel_df.a/dfdistt.o .libs/libbagel.lax/libbagel_df.a/paralleldf.o .libs/libbagel.lax/libbagel_df.a/relcdmatrix.o .libs/libbagel.lax/libbagel_df.a/reldf.o .libs/libbagel.lax/libbagel_df.a/reldffull.o .libs/libbagel.lax/libbagel_df.a/reldffullt.o .libs/libbagel.lax/libbagel_df.a/reldfhalf.o .libs/libbagel.lax/libbagel_smith.a/CASA.o .libs/libbagel.lax/libbagel_smith.a/CASA_gamma.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen1.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen2.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen3.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen4.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen5.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen6.o .libs/libbagel.lax/libbagel_smith.a/CASA_residualq.o .libs/libbagel.lax/libbagel_smith.a/CASA_sourceq.o .libs/libbagel.lax/libbagel_smith.a/CASA_tasks1.o 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.libs/libbagel.lax/libbagel_molecule.a/shell_base.o .libs/libbagel.lax/libbagel_molecule.a/shellecp.o .libs/libbagel.lax/libbagel_molecule.a/shellpair.o .libs/libbagel.lax/libbagel_io.a/dfpcmo.o .libs/libbagel.lax/libbagel_io.a/molden_transforms.o .libs/libbagel.lax/libbagel_io.a/moldenin.o .libs/libbagel.lax/libbagel_io.a/moldenio.o .libs/libbagel.lax/libbagel_io.a/moldenout.o .libs/libbagel.lax/libbagel_util.a/atommap.o .libs/libbagel.lax/libbagel_util.a/f77_interface.o .libs/libbagel.lax/libbagel_parallel.a/mpi_interface.o .libs/libbagel.lax/libbagel_parallel.a/process.o .libs/libbagel.lax/libbagel_parallel.a/resources.o .libs/libbagel.lax/libbagel_parallel.a/rmawindow.o .libs/libbagel.lax/libbagel_math.a/algo.o .libs/libbagel.lax/libbagel_math.a/blocked.o .libs/libbagel.lax/libbagel_math.a/blocksparsematrix.o .libs/libbagel.lax/libbagel_math.a/btas_interface.o .libs/libbagel.lax/libbagel_math.a/csymmatrix.o .libs/libbagel.lax/libbagel_math.a/distmatrix.o .libs/libbagel.lax/libbagel_math.a/distmatrix_base.o .libs/libbagel.lax/libbagel_math.a/distzmatrix.o .libs/libbagel.lax/libbagel_math.a/jacobi.o .libs/libbagel.lax/libbagel_math.a/lt1-transpose.o .libs/libbagel.lax/libbagel_math.a/matrix.o .libs/libbagel.lax/libbagel_math.a/matrix_base.o .libs/libbagel.lax/libbagel_math.a/matview.o .libs/libbagel.lax/libbagel_math.a/preallocarray.o .libs/libbagel.lax/libbagel_math.a/quatern.o .libs/libbagel.lax/libbagel_math.a/sparsematrix.o .libs/libbagel.lax/libbagel_math.a/sphharmonics.o .libs/libbagel.lax/libbagel_math.a/transpose.o .libs/libbagel.lax/libbagel_math.a/unblocked.o .libs/libbagel.lax/libbagel_math.a/xyzfile.o .libs/libbagel.lax/libbagel_math.a/zmatrix.o .libs/libbagel.lax/libbagel_math.a/zquatev.o .libs/libbagel.lax/libbagel_math.a/ztranspose.o .libs/libbagel.lax/libbagel_input.a/libbagel_input_la-input.o libtool: link: ranlib .libs/libbagel.a libtool: link: rm -fr .libs/libbagel.lax .libs/libbagel.lax libtool: link: ( cd ".libs" && rm -f "libbagel.la" && ln -s "../libbagel.la" "libbagel.la" ) /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o BAGEL main.o libbagel.la opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -Wl,-z -Wl,relro -o BAGEL main.o -L/usr/lib/x86_64-linux-gnu ./.libs/libbagel.a opt/.libs/libbagel_opt.a multi/zcasscf/.libs/libbagel_zcasscf.a ci/zfci/.libs/libbagel_zfci.a ci/fci/.libs/libbagel_fci.a ci/ras/.libs/libbagel_ras.a response/.libs/libbagel_response.a scf/.libs/libbagel_scf.a multi/casscf/.libs/libbagel_casscf.a pt2/.libs/libbagel_pt2.a grad/.libs/libbagel_grad.a wfn/.libs/libbagel_wfn.a df/.libs/libbagel_df.a smith/.libs/libbagel_smith.a prop/.libs/libbagel_prop.a asd/.libs/libbagel_asd.a asd/dmrg/.libs/libbagel_asd_dmrg.a asd/orbital/.libs/libbagel_asd_orbital.a asd/dimer/.libs/libbagel_dimer.a asd/multisite/.libs/libbagel_multisite.a ci/ciutil/.libs/libbagel_ciutil.a mat1e/.libs/libbagel_mat1e.a integral/.libs/libbagel_integral.a molecule/.libs/libbagel_molecule.a util/io/.libs/libbagel_io.a util/.libs/libbagel_util.a util/parallel/.libs/libbagel_parallel.a util/math/.libs/libbagel_math.a util/input/.libs/libbagel_input.a -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' make[1]: Leaving directory '/build/bagel-1.2.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_test make -j1 check VERBOSE=1 make[2]: Entering directory '/build/bagel-1.2.2' Making check in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making check in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making check in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making check in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/io' Making check in input make[5]: Entering directory '/build/bagel-1.2.2/src/util/input' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/input' Making check in math make[5]: Entering directory '/build/bagel-1.2.2/src/util/math' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Entering directory '/build/bagel-1.2.2/src/util' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util' make[4]: Leaving directory '/build/bagel-1.2.2/src/util' Making check in molecule make[4]: Entering directory '/build/bagel-1.2.2/src/molecule' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/molecule' Making check in integral make[4]: Entering directory '/build/bagel-1.2.2/src/integral' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/integral' Making check in df make[4]: Entering directory '/build/bagel-1.2.2/src/df' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/df' Making check in opt make[4]: Entering directory '/build/bagel-1.2.2/src/opt' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/opt' Making check in grad make[4]: Entering directory '/build/bagel-1.2.2/src/grad' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/grad' Making check in pt2 make[4]: Entering directory '/build/bagel-1.2.2/src/pt2' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/pt2' Making check in wfn make[4]: Entering directory '/build/bagel-1.2.2/src/wfn' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/wfn' Making check in scf make[4]: Entering directory '/build/bagel-1.2.2/src/scf' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/scf' Making check in multi make[4]: Entering directory '/build/bagel-1.2.2/src/multi' Making check in casscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' Making check in zcasscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Entering directory '/build/bagel-1.2.2/src/multi' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi' make[4]: Leaving directory '/build/bagel-1.2.2/src/multi' Making check in smith make[4]: Entering directory '/build/bagel-1.2.2/src/smith' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making check in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making check in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making check in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making check in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' Making check in ras make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' Making check in zfci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Entering directory '/build/bagel-1.2.2/src/ci' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci' make[4]: Leaving directory '/build/bagel-1.2.2/src/ci' Making check in response make[4]: Entering directory '/build/bagel-1.2.2/src/response' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/response' Making check in asd make[4]: Entering directory '/build/bagel-1.2.2/src/asd' Making check in dmrg make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' Making check in dimer make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' Making check in multisite make[5]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' Making check in orbital make[5]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Entering directory '/build/bagel-1.2.2/src/asd' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd' make[4]: Leaving directory '/build/bagel-1.2.2/src/asd' Making check in mat1e make[4]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/mat1e' Making check in basis make[4]: Entering directory '/build/bagel-1.2.2/src/basis' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' make TestSuite make[5]: Entering directory '/build/bagel-1.2.2/src' mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o test_main.o test_main.cc /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -o TestSuite test_main.o libbagel.la opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -Wl,-z -Wl,relro -o TestSuite test_main.o -L/usr/lib/x86_64-linux-gnu ./.libs/libbagel.a opt/.libs/libbagel_opt.a multi/zcasscf/.libs/libbagel_zcasscf.a ci/zfci/.libs/libbagel_zfci.a ci/fci/.libs/libbagel_fci.a ci/ras/.libs/libbagel_ras.a response/.libs/libbagel_response.a scf/.libs/libbagel_scf.a multi/casscf/.libs/libbagel_casscf.a pt2/.libs/libbagel_pt2.a grad/.libs/libbagel_grad.a wfn/.libs/libbagel_wfn.a df/.libs/libbagel_df.a smith/.libs/libbagel_smith.a prop/.libs/libbagel_prop.a asd/.libs/libbagel_asd.a asd/dmrg/.libs/libbagel_asd_dmrg.a asd/orbital/.libs/libbagel_asd_orbital.a asd/dimer/.libs/libbagel_dimer.a asd/multisite/.libs/libbagel_multisite.a ci/ciutil/.libs/libbagel_ciutil.a mat1e/.libs/libbagel_mat1e.a integral/.libs/libbagel_integral.a molecule/.libs/libbagel_molecule.a util/io/.libs/libbagel_io.a util/.libs/libbagel_util.a util/parallel/.libs/libbagel_parallel.a util/math/.libs/libbagel_math.a util/input/.libs/libbagel_input.a -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread make[5]: Leaving directory '/build/bagel-1.2.2/src' make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' mkdir -p /build/bagel-1.2.2/src/testsuite (cd /build/bagel-1.2.2/src/testsuite; ../TestSuite --log_level=all) i-capture-the-hostname Running 31 test cases... Entering test module "Suites" ../src/testimpl/test_scf.cc(84): Entering test suite "TEST_SCF" ../src/testimpl/test_scf.cc(86): Entering test case "DF_HF" ../src/testimpl/test_scf.cc(87): info: check compare(scf_energy("hf_svp_hf"), -99.84779026) has passed ../src/testimpl/test_scf.cc(88): info: check compare(scf_energy("hf_svp_dfhf"), -99.84772354) has passed ../src/testimpl/test_scf.cc(90): info: check compare(scf_energy("hf_svp_dfhf_restart"),-99.84772354) has passed ../src/testimpl/test_scf.cc(92): info: check compare(scf_energy("hf_svp_dfhf_ext"), -99.83765614) has passed ../src/testimpl/test_scf.cc(93): info: check compare(scf_energy("hf_svp_dfhf_cart"), -99.84911270) has passed ../src/testimpl/test_scf.cc(94): info: check compare(scf_energy("hf_svp_dfhf_charge"), -99.78567137) has passed ../src/testimpl/test_scf.cc(95): info: check compare(scf_energy("hf_svp_dfhf_dkh"), -99.92869677) has passed ../src/testimpl/test_scf.cc(96): info: check compare(scf_energy("hf_mix_dfhf"), -99.83889193) has passed ../src/testimpl/test_scf.cc(97): info: check compare(scf_energy("hf_mix2_dfhf"), -99.83889193) has passed ../src/testimpl/test_scf.cc(98): info: check compare(scf_energy("oh_svp_uhf"), -75.28410147) has passed ../src/testimpl/test_scf.cc(99): info: check compare(scf_energy("hc_svp_rohf"), -38.16810629) has passed ../src/testimpl/test_scf.cc(100): info: check compare(scf_energy("hf_new_dfhf"), -99.97989929) has passed ../src/testimpl/test_scf.cc(101): info: check compare(scf_energy("hcl_svp_dfhf"), -459.93784632) has passed ../src/testimpl/test_scf.cc(102): info: check compare(scf_energy("cuh2_ecp_hf"), -196.12254012) has passed ../src/testimpl/test_scf.cc(103): info: check compare(scf_energy("hbr_ecp_sohf"), -13.68431370) has passed ../src/testimpl/test_scf.cc(104): info: check compare(scf_energy("h2o_svp_fmm"), -151.91459783) has passed ../src/testimpl/test_scf.cc(106): info: check compare(scf_energy("h2o_svp_fmm_restart"),-151.91459783) has passed ../src/testimpl/test_scf.cc(86): Leaving test case "DF_HF"; testing time: 14149386us ../src/testimpl/test_scf.cc(84): Leaving test suite "TEST_SCF"; testing time: 14149418us ../src/testimpl/test_molden.cc(98): Entering test suite "TEST_MOLDEN" ../src/testimpl/test_molden.cc(100): Entering test case "MOLDEN" ../src/testimpl/test_molden.cc(101): info: check compare(molden_out_energy("hf_write_mol_sph", "hf_read_mol_sph"), -99.84772354 ) has passed ../src/testimpl/test_molden.cc(102): info: check compare(molden_out_energy("hf_write_mol_cart", "hf_read_mol_cart"), -99.84911270 ) has passed ../src/testimpl/test_molden.cc(100): Leaving test case "MOLDEN"; testing time: 392509us ../src/testimpl/test_molden.cc(98): Leaving test suite "TEST_MOLDEN"; testing time: 392542us ../src/testimpl/test_prop.cc(67): Entering test suite "TEST_PROP" ../src/testimpl/test_prop.cc(69): Entering test case "MULTIPOLE" ../src/testimpl/test_prop.cc(70): info: check compare>(multipole("hf_svp_dfhf"), hf_svp_dfhf_multipole_ref(), 1.0e-6) has passed ../src/testimpl/test_prop.cc(69): Leaving test case "MULTIPOLE"; testing time: 165828us ../src/testimpl/test_prop.cc(67): Leaving test suite "TEST_PROP"; testing time: 165861us ../src/testimpl/test_ks.cc(61): Entering test suite "TEST_KS" ../src/testimpl/test_ks.cc(63): Entering test case "DF_KS" ../src/testimpl/test_ks.cc(64): info: check compare(ks_energy("hf_svp_b3lyp"), -100.28959774) has passed ../src/testimpl/test_ks.cc(63): Leaving test case "DF_KS"; testing time: 915657us ../src/testimpl/test_ks.cc(61): Leaving test suite "TEST_KS"; testing time: 915700us ../src/testimpl/test_rel.cc(66): Entering test suite "TEST_REL" ../src/testimpl/test_rel.cc(68): Entering test case "DIRAC_FOCK" ../src/testimpl/test_rel.cc(69): info: check compare(rel_energy("hf_svp_coulomb"), -99.93791152) has passed ../src/testimpl/test_rel.cc(70): info: check compare(rel_energy("hf_svp_gaunt"), -99.92699858) has passed ../src/testimpl/test_rel.cc(71): info: check compare(rel_energy("hf_svp_breit"), -99.92755305) has passed ../src/testimpl/test_rel.cc(68): Leaving test case "DIRAC_FOCK"; testing time: 29758522us ../src/testimpl/test_rel.cc(66): Leaving test suite "TEST_REL"; testing time: 29758561us ../src/testimpl/test_mp2.cc(58): Entering test suite "TEST_MP2" ../src/testimpl/test_mp2.cc(60): Entering test case "MP2" ../src/testimpl/test_mp2.cc(61): info: check compare(mp2_energy("benzene_svp_mp2"), -231.31440958) has passed ../src/testimpl/test_mp2.cc(62): info: check compare(mp2_energy("benzene_svp_mp2_aux"), -231.31450878) has passed ../src/testimpl/test_mp2.cc(60): Leaving test case "MP2"; testing time: 56934714us ../src/testimpl/test_mp2.cc(58): Leaving test suite "TEST_MP2"; testing time: 56934746us ../src/testimpl/test_casscf.cc(62): Entering test suite "TEST_CASSCF" ../src/testimpl/test_casscf.cc(64): Entering test case "DF_CASSCF" ../src/testimpl/test_casscf.cc(65): info: check compare(cas_energy("h2o_svp_cas"), -76.00368392) has passed ../src/testimpl/test_casscf.cc(66): info: check compare(cas_energy("lif_svp_cas22"), -106.70563743) has passed ../src/testimpl/test_casscf.cc(67): info: check compare(cas_energy("li2_tzvpp_cas43"), -14.87300366) has passed ../src/testimpl/test_casscf.cc(68): info: check compare(cas_energy("lih_tzvpp_cas22"), -7.98191070) has passed ../src/testimpl/test_casscf.cc(64): Leaving test case "DF_CASSCF"; testing time: 3672626us ../src/testimpl/test_casscf.cc(62): Leaving test suite "TEST_CASSCF"; testing time: 3672658us ../src/testimpl/test_fci.cc(103): Entering test suite "TEST_FCI" ../src/testimpl/test_fci.cc(105): Entering test case "KNOWLES_HANDY" ../src/testimpl/test_fci.cc(106): info: check compare(fci_energy("hf_sto3g_fci_kh"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(110): info: check compare(fci_energy("hhe_svp_fci_kh_trip"), reference_fci_energy2()) has passed ../src/testimpl/test_fci.cc(105): Leaving test case "KNOWLES_HANDY"; testing time: 299250us ../src/testimpl/test_fci.cc(113): Entering test case "HARRISON_ZARRABIAN" ../src/testimpl/test_fci.cc(114): info: check compare(fci_energy("hf_sto3g_fci_hz"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(115): info: check compare(fci_energy("hhe_svp_fci_hz_trip"), reference_fci_energy2()) has passed ../src/testimpl/test_fci.cc(113): Leaving test case "HARRISON_ZARRABIAN"; testing time: 365959us ../src/testimpl/test_fci.cc(119): Entering test case "DIST_FCI" ../src/testimpl/test_fci.cc(120): info: check compare(fci_energy("hf_sto3g_fci_dist"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(119): Leaving test case "DIST_FCI"; testing time: 150245us ../src/testimpl/test_fci.cc(103): Leaving test suite "TEST_FCI"; testing time: 815561us ../src/testimpl/test_zfci.cc(105): Entering test suite "TEST_RELFCI" ../src/testimpl/test_zfci.cc(107): Entering test case "ZHARRISON" ../src/testimpl/test_zfci.cc(108): info: check compare(relfci_energy("hf_sto3g_relfci_coulomb"), reference_relfci_energy()) has passed ../src/testimpl/test_zfci.cc(109): info: check compare(relfci_energy("hf_sto3g_relfci_gaunt"), reference_relfci_energy2()) has passed ../src/testimpl/test_zfci.cc(110): info: check compare(relfci_energy("hf_sto3g_relfci_breit"), reference_relfci_energy3()) has passed ../src/testimpl/test_zfci.cc(107): Leaving test case "ZHARRISON"; testing time: 12255965us ../src/testimpl/test_zfci.cc(105): Leaving test suite "TEST_RELFCI"; testing time: 12255998us ../src/testimpl/test_zcasscf.cc(98): Entering test suite "TEST_RELCAS" ../src/testimpl/test_zcasscf.cc(100): Entering test case "ZCASSCF" Test case TEST_RELCAS/ZCASSCF did not check any assertions ../src/testimpl/test_zcasscf.cc(100): Leaving test case "ZCASSCF"; testing time: 393us ../src/testimpl/test_zcasscf.cc(98): Leaving test suite "TEST_RELCAS"; testing time: 441us ../src/testimpl/test_ras.cc(92): Entering test suite "TEST_RAS" ../src/testimpl/test_ras.cc(94): Entering test case "FCI_EQUIVALENT" ../src/testimpl/test_ras.cc(95): info: check compare(ras_energy("h2o_sto3g_ras_full"), reference_ras_energy_h2o_full()) has passed ../src/testimpl/test_ras.cc(96): info: check compare(ras_energy("hhe_svp_ras_full"), reference_ras_energy_hhe_full()) has passed ../src/testimpl/test_ras.cc(94): Leaving test case "FCI_EQUIVALENT"; testing time: 460664us ../src/testimpl/test_ras.cc(99): Entering test case "RESTRICTED" ../src/testimpl/test_ras.cc(100): info: check compare(ras_energy("h2o_sto3g_ras_restricted"), reference_ras_energy_h2o_restricted()) has passed ../src/testimpl/test_ras.cc(101): info: check compare(ras_energy("hhe_svp_ras_restricted"), reference_ras_energy_hhe_restricted()) has passed ../src/testimpl/test_ras.cc(99): Leaving test case "RESTRICTED"; testing time: 284963us ../src/testimpl/test_ras.cc(92): Leaving test suite "TEST_RAS"; testing time: 745704us ../src/testimpl/test_nevpt2.cc(58): Entering test suite "TEST_NEVPT2" ../src/testimpl/test_nevpt2.cc(60): Entering test case "NEVPT2" ../src/testimpl/test_nevpt2.cc(61): info: check compare(nevpt2_energy("h2o_svp_nevpt2"), -76.0205249495) has passed ../src/testimpl/test_nevpt2.cc(60): Leaving test case "NEVPT2"; testing time: 807004us ../src/testimpl/test_nevpt2.cc(58): Leaving test suite "TEST_NEVPT2"; testing time: 807045us ../src/testimpl/test_force.cc(102): Entering test suite "TEST_FORCE" ../src/testimpl/test_force.cc(104): Entering test case "Deriv_Coup" ../src/testimpl/test_force.cc(105): info: check compare(run_force("lif_svp_cas_nacme"), reference_cas_nacme(), 1.0e-5) has passed ../src/testimpl/test_force.cc(107): info: check compare(run_force("lif_svp_xmscaspt2_nacme"), reference_xms_nacme(), 1.0e-5) has passed ../src/testimpl/test_force.cc(104): Leaving test case "Deriv_Coup"; testing time: 2873793us ../src/testimpl/test_force.cc(111): Entering test case "Finite_Grad" ../src/testimpl/test_force.cc(112): info: check compare(run_force("hf_mix_dfhf_finite"), reference_scf_finite_mix(), 1.0e-5) has passed ../src/testimpl/test_force.cc(113): info: check compare(run_force("hf_svp_mp2_aux_finite"), reference_svp_mp2_aux_finite(), 1.0e-5) has passed ../src/testimpl/test_force.cc(115): info: check compare(run_force("lif_svp_xmscaspt2_finite"), reference_xms_finite(), 1.0e-5) has passed ../src/testimpl/test_force.cc(111): Leaving test case "Finite_Grad"; testing time: 8677698us ../src/testimpl/test_force.cc(119): Entering test case "Hcore_Grad" ../src/testimpl/test_force.cc(120): info: check compare(run_force("hf_svp_dfhf_dkh_grad"), reference_dkh_grad(), 1.0e-5) has passed ../src/testimpl/test_force.cc(119): Leaving test case "Hcore_Grad"; testing time: 219994us ../src/testimpl/test_force.cc(102): Leaving test suite "TEST_FORCE"; testing time: 11771594us ../src/testimpl/test_opt.cc(146): Entering test suite "TEST_OPT" ../src/testimpl/test_opt.cc(148): Entering test case "DF_HF_Opt" ../src/testimpl/test_opt.cc(149): info: check compare(run_opt("hf_svp_dfhf_opt"), reference_scf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(150): info: check compare(run_opt("hf_svp_dfhf_opt_cart"), reference_scf_opt_cart(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(151): info: check compare(run_opt("hf_mix_dfhf_opt"), reference_scf_opt_mix(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(152): info: check compare(run_opt("oh_svp_uhf_opt"), reference_uhf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(153): info: check compare(run_opt("hc_svp_rohf_opt"), reference_rohf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(154): info: check compare(run_opt("hcl_svp_dfhf_opt"), reference_hcl_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(155): info: check compare(run_opt("hf_svp_coulomb_opt"), reference_dcf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(148): Leaving test case "DF_HF_Opt"; testing time: 6278121us ../src/testimpl/test_opt.cc(158): Entering test case "DF_KS_Opt" ../src/testimpl/test_opt.cc(159): info: check compare(run_opt("hf_svp_b3lyp_opt"), reference_ks_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(158): Leaving test case "DF_KS_Opt"; testing time: 2909712us ../src/testimpl/test_opt.cc(162): Entering test case "MP2_Opt" ../src/testimpl/test_opt.cc(163): info: check compare>(run_opt("hf_svp_mp2_opt"), reference_mp2_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(164): info: check compare>(run_opt("hf_svp_mp2_aux_opt"), reference_mp2_aux_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(162): Leaving test case "MP2_Opt"; testing time: 1406827us ../src/testimpl/test_opt.cc(166): Entering test case "CASSCF_Opt" ../src/testimpl/test_opt.cc(167): info: check compare>(run_opt("hf_svp_cas_opt"), reference_cas_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(168): info: check compare>(run_opt("hf_svp_sacas_opt"), reference_sacas_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(169): info: check compare>(run_opt("ch2_sto3g_meci_opt"),reference_ch2_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(166): Leaving test case "CASSCF_Opt"; testing time: 6973067us ../src/testimpl/test_opt.cc(146): Leaving test suite "TEST_OPT"; testing time: 17567866us ../src/testimpl/test_localize.cc(75): Entering test suite "TEST_LOCALIZE" ../src/testimpl/test_localize.cc(77): Entering test case "PML" ../src/testimpl/test_localize.cc(78): info: check compare(localization("benzene_sto3g_pml"),0.7951349703, 0.000001) has passed ../src/testimpl/test_localize.cc(79): info: check compare(localization("watertrimer_sto3g_pml_region"),0.9999109690, 0.000001) has passed ../src/testimpl/test_localize.cc(77): Leaving test case "PML"; testing time: 687697us ../src/testimpl/test_localize.cc(82): Entering test case "REGION" ../src/testimpl/test_localize.cc(83): info: check compare(localization("watertrimer_sto3g_rl"), 0.0) has passed ../src/testimpl/test_localize.cc(82): Leaving test case "REGION"; testing time: 155233us ../src/testimpl/test_localize.cc(75): Leaving test suite "TEST_LOCALIZE"; testing time: 842997us ../src/testimpl/test_asd.cc(162): Entering test suite "TEST_ASD" ../src/testimpl/test_asd.cc(164): Entering test case "CAS" ../src/testimpl/test_asd.cc(165): info: check compare(asd_energy("benzene_sto3g_asd_stack"), -459.40037137, 1.0e-6) has passed ../src/testimpl/test_asd.cc(166): info: check compare(asd_energy("benzene_sto3g_asd_T"), -459.36294726, 1.0e-6) has passed ../src/testimpl/test_asd.cc(164): Leaving test case "CAS"; testing time: 25496379us ../src/testimpl/test_asd.cc(169): Entering test case "RAS" ../src/testimpl/test_asd.cc(170): info: check compare(asd_models("benzene_sto3g_asd-ras_stack"), std::vector{{ 0.000000000, 0.000047060, 0.000047060, 0.000000000, -0.001758099, 0.001599564, 0.001599564, -0.001758099 }}, 1.0e-6) has passed ../src/testimpl/test_asd.cc(169): Leaving test case "RAS"; testing time: 10734131us ../src/testimpl/test_asd.cc(162): Leaving test suite "TEST_ASD"; testing time: 36230584us ../src/testimpl/test_asd_dmrg.cc(68): Entering test suite "TEST_ASD_DMRG" ../src/testimpl/test_asd_dmrg.cc(70): Entering test case "RASD_DMRG" ../src/testimpl/test_asd_dmrg.cc(71): info: check compare(asd_dmrg_energy("he3_svp_asd-dmrg"), -8.59391356, 1.0e-8) has passed ../src/testimpl/test_asd_dmrg.cc(70): Leaving test case "RASD_DMRG"; testing time: 14525442us ../src/testimpl/test_asd_dmrg.cc(68): Leaving test suite "TEST_ASD_DMRG"; testing time: 14525474us ../src/testimpl/test_london.cc(67): Entering test suite "TEST_LONDON" ../src/testimpl/test_london.cc(69): Entering test case "LONDON" ../src/testimpl/test_london.cc(70): info: check compare(london_energy("hf_svp_london_hf"), -99.70397733) has passed ../src/testimpl/test_london.cc(71): info: check compare(london_energy("hf_svp_london_dfhf"), -99.70391005) has passed ../src/testimpl/test_london.cc(72): info: check compare(london_energy("hf_svp_common_dfhf"), -98.55057515) has passed ../src/testimpl/test_london.cc(73): info: check compare(london_energy("hf_svp_london_coulomb"), -99.82461004) has passed ../src/testimpl/test_london.cc(74): info: check compare(london_energy("hf_svp_london_gaunt"), -99.81352977) has passed ../src/testimpl/test_london.cc(75): info: check compare(london_energy("hcl_svp_london_coulomb"), -459.16442992) has passed ../src/testimpl/test_london.cc(76): info: check compare(london_energy("hcl_svp_common_coulomb"), -457.89462676) has passed ../src/testimpl/test_london.cc(77): info: check compare(london_energy("hcl_svp_common_gaunt"), -454.55922514) has passed ../src/testimpl/test_london.cc(69): Leaving test case "LONDON"; testing time: 67741001us ../src/testimpl/test_london.cc(67): Leaving test suite "TEST_LONDON"; testing time: 67741032us ../src/testimpl/test_pseudospin.cc(96): Entering test suite "TEST_PSEUDOSPIN" ../src/testimpl/test_pseudospin.cc(98): Entering test case "ZFSPLITTING" Test case TEST_PSEUDOSPIN/ZFSPLITTING did not check any assertions ../src/testimpl/test_pseudospin.cc(98): Leaving test case "ZFSPLITTING"; testing time: 412us ../src/testimpl/test_pseudospin.cc(96): Leaving test suite "TEST_PSEUDOSPIN"; testing time: 455us ../src/testimpl/test_smith.cc(59): Entering test suite "TEST_SMITH" ../src/testimpl/test_smith.cc(61): Entering test case "CASPT2_Opt" ../src/testimpl/test_smith.cc(62): info: check compare(run_force("li2_svp_caspt2_grad"), reference_noshift(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(63): info: check compare(run_force("li2_svp_caspt2_shift"), reference_shift(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(64): info: check compare(run_force("lif_svp_mscaspt2_grad"), reference_ms(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(65): info: check compare(run_force("lif_svp_xmscaspt2_grad"), reference_xms(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(66): info: check compare(run_force("lif_svp_xmscaspt2_grad_imag"), reference_xms_imag(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(61): Leaving test case "CASPT2_Opt"; testing time: 13294708us ../src/testimpl/test_smith.cc(59): Leaving test suite "TEST_SMITH"; testing time: 13294744us ../src/testimpl/test_response.cc(67): Entering test suite "TEST_RESPONSE" ../src/testimpl/test_response.cc(69): Entering test case "CIS" ../src/testimpl/test_response.cc(70): info: check compare>(cis_energy("hf_svp_cis"), hf_svp_cis_ref(), 1.0e-6) has passed ../src/testimpl/test_response.cc(69): Leaving test case "CIS"; testing time: 1651105us ../src/testimpl/test_response.cc(67): Leaving test suite "TEST_RESPONSE"; testing time: 1651144us Leaving test module "Suites"; testing time: 284240932us  *** No errors detected make[1]: Leaving directory '/build/bagel-1.2.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --max-parallel=1 --with autoreconf dh_testroot -O--max-parallel=1 dh_prep -O--max-parallel=1 dh_installdirs -O--max-parallel=1 debian/rules override_dh_auto_install make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_install --destdir=/build/bagel-1.2.2/debian/tmp make -j1 install DESTDIR=/build/bagel-1.2.2/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/bagel-1.2.2' Making install in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making install in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making install in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[6]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making install in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' make[6]: Entering directory '/build/bagel-1.2.2/src/util/io' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/io' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/io' Making install in input make[5]: Entering directory '/build/bagel-1.2.2/src/util/input' make[6]: Entering directory '/build/bagel-1.2.2/src/util/input' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/input' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/input' Making install in math make[5]: Entering directory '/build/bagel-1.2.2/src/util/math' make[6]: Entering directory '/build/bagel-1.2.2/src/util/math' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Entering directory '/build/bagel-1.2.2/src/util' make[6]: Entering directory '/build/bagel-1.2.2/src/util' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util' make[5]: Leaving directory '/build/bagel-1.2.2/src/util' make[4]: Leaving directory '/build/bagel-1.2.2/src/util' Making install in molecule make[4]: Entering directory '/build/bagel-1.2.2/src/molecule' make[5]: Entering directory '/build/bagel-1.2.2/src/molecule' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/molecule' make[4]: Leaving directory '/build/bagel-1.2.2/src/molecule' Making install in integral make[4]: Entering directory '/build/bagel-1.2.2/src/integral' make[5]: Entering directory '/build/bagel-1.2.2/src/integral' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/integral' make[4]: Leaving directory '/build/bagel-1.2.2/src/integral' Making install in df make[4]: Entering directory '/build/bagel-1.2.2/src/df' make[5]: Entering directory '/build/bagel-1.2.2/src/df' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/df' make[4]: Leaving directory '/build/bagel-1.2.2/src/df' Making install in opt make[4]: Entering directory '/build/bagel-1.2.2/src/opt' make[5]: Entering directory '/build/bagel-1.2.2/src/opt' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/opt' make[4]: Leaving directory '/build/bagel-1.2.2/src/opt' Making install in grad make[4]: Entering directory '/build/bagel-1.2.2/src/grad' make[5]: Entering directory '/build/bagel-1.2.2/src/grad' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/grad' make[4]: Leaving directory '/build/bagel-1.2.2/src/grad' Making install in pt2 make[4]: Entering directory '/build/bagel-1.2.2/src/pt2' make[5]: Entering directory '/build/bagel-1.2.2/src/pt2' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/pt2' make[4]: Leaving directory '/build/bagel-1.2.2/src/pt2' Making install in wfn make[4]: Entering directory '/build/bagel-1.2.2/src/wfn' make[5]: Entering directory '/build/bagel-1.2.2/src/wfn' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/wfn' make[4]: Leaving directory '/build/bagel-1.2.2/src/wfn' Making install in scf make[4]: Entering directory '/build/bagel-1.2.2/src/scf' make[5]: Entering directory '/build/bagel-1.2.2/src/scf' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/scf' make[4]: Leaving directory '/build/bagel-1.2.2/src/scf' Making install in multi make[4]: Entering directory '/build/bagel-1.2.2/src/multi' Making install in casscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[6]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' Making install in zcasscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[6]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Entering directory '/build/bagel-1.2.2/src/multi' make[6]: Entering directory '/build/bagel-1.2.2/src/multi' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi' make[4]: Leaving directory '/build/bagel-1.2.2/src/multi' Making install in smith make[4]: Entering directory '/build/bagel-1.2.2/src/smith' make[5]: Entering directory '/build/bagel-1.2.2/src/smith' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/smith' make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making install in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' make[5]: Entering directory '/build/bagel-1.2.2/src/prop' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/prop' make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making install in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making install in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making install in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' Making install in ras make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' Making install in zfci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Entering directory '/build/bagel-1.2.2/src/ci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci' make[4]: Leaving directory '/build/bagel-1.2.2/src/ci' Making install in response make[4]: Entering directory '/build/bagel-1.2.2/src/response' make[5]: Entering directory '/build/bagel-1.2.2/src/response' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/response' make[4]: Leaving directory '/build/bagel-1.2.2/src/response' Making install in asd make[4]: Entering directory '/build/bagel-1.2.2/src/asd' Making install in dmrg make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' Making install in dimer make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' Making install in multisite make[5]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' Making install in orbital make[5]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Entering directory '/build/bagel-1.2.2/src/asd' make[6]: Entering directory '/build/bagel-1.2.2/src/asd' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd' make[4]: Leaving directory '/build/bagel-1.2.2/src/asd' Making install in mat1e make[4]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[5]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/mat1e' make[4]: Leaving directory '/build/bagel-1.2.2/src/mat1e' Making install in basis make[4]: Entering directory '/build/bagel-1.2.2/src/basis' make[5]: Entering directory '/build/bagel-1.2.2/src/basis' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' /usr/bin/install -c -m 644 3-21g.json 6-31g.json ano-rcc.json aug-cc-pv5z.json aug-cc-pv6z.json aug-cc-pvdz.json aug-cc-pvqz.json aug-cc-pvtz.json cc-pv5z-jkfit.json cc-pv5z-ri.json cc-pv5z.json cc-pv6z.json cc-pvdz-jkfit.json cc-pvdz-ri.json cc-pvdz.json cc-pvqz-jkfit.json cc-pvqz-ri.json cc-pvqz.json cc-pvtz-jkfit.json cc-pvtz-ri.json cc-pvtz.json complete.json def2-SVP-2c-ecp.json def2-SVP-ecp.json ecp10mdf.json ecp28mdf.json ecp46mdf.json ecp60mdf.json ecp78mdf.json lanl2dz-ecp.json qzvpp-jkfit.json qzvpp.json sto-3g.json svp-jkfit.json svp.json tzvpp-jkfit.json tzvpp.json aug-cc-pcv5z.json aug-cc-pcvqz.json aug-cc-pwcvdz.json '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' /usr/bin/install -c -m 644 cc-pcv5z.json cc-pvdz-dk.json d-aug-cc-pvqz.json aug-cc-pcvdz-dk.json aug-cc-pcvtz-dk.json aug-cc-pwcvqz.json cc-pcvdz.json cc-pvtz-dk.json d-aug-cc-pvtz.json aug-cc-pcvdz.json aug-cc-pcvtz.json aug-cc-pwcvtz.json cc-pcvqz.json d-aug-cc-pv5z.json aug-cc-pcvqz-dk.json aug-cc-pwcv5z.json cc-pcvtz.json d-aug-cc-pvdz.json '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' make[5]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' make[5]: Entering directory '/build/bagel-1.2.2/src' /bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/lib/bagel' /bin/sh ../libtool --mode=install /usr/bin/install -c libbagel.la '/build/bagel-1.2.2/debian/tmp/usr/lib/bagel' libtool: install: /usr/bin/install -c .libs/libbagel.lai /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.la libtool: install: /usr/bin/install -c .libs/libbagel.a /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: install: chmod 644 /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: install: ranlib /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: warning: remember to run 'libtool --finish /usr/lib/bagel' /bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c BAGEL '/build/bagel-1.2.2/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c BAGEL /build/bagel-1.2.2/debian/tmp/usr/bin/BAGEL /bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/include' /usr/bin/install -c -m 644 bagel.h '/build/bagel-1.2.2/debian/tmp/usr/include' make[5]: Leaving directory '/build/bagel-1.2.2/src' make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[4]: Entering directory '/build/bagel-1.2.2' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' (cd docs; cp -a _static _images searchindex.js /build/bagel-1.2.2/debian/bagel/usr/share/doc/bagel/html) (cd docs; cp --parents `find -name \*.html*` /build/bagel-1.2.2/debian/bagel/usr/share/doc/bagel/html) make[1]: Leaving directory '/build/bagel-1.2.2' dh_install -O--max-parallel=1 dh_installdocs -O--max-parallel=1 debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/bagel-1.2.2' dh_installchangelogs -XChangeLog make[1]: Leaving directory '/build/bagel-1.2.2' dh_installexamples -O--max-parallel=1 dh_installinit -O--max-parallel=1 dh_installsystemduser -O--max-parallel=1 dh_perl -O--max-parallel=1 dh_link -O--max-parallel=1 dh_strip_nondeterminism -O--max-parallel=1 dh_compress -O--max-parallel=1 dh_fixperms -O--max-parallel=1 dh_missing -O--max-parallel=1 dh_missing: warning: usr/include/bagel.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/bagel/libbagel.a exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/bagel/libbagel.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: bagel (2) * dh_installdocs: bagel (0) * dh_installexamples: bagel (93) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -O--max-parallel=1 dh_strip -O--max-parallel=1 dh_makeshlibs -O--max-parallel=1 dh_shlibdeps -O--max-parallel=1 dh_installdeb -O--max-parallel=1 dh_gencontrol -O--max-parallel=1 dh_md5sums -O--max-parallel=1 dh_builddeb -O--max-parallel=1 dpkg-deb: building package 'bagel' in '../bagel_1.2.2-2_amd64.deb'. dpkg-deb: building package 'bagel-dbgsym' in '../bagel-dbgsym_1.2.2-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bagel_1.2.2-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/249802/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/249802/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/249802 and its subdirectories I: Current time: Fri Feb 9 04:44:29 +14 2024 I: pbuilder-time-stamp: 1707403469