I: pbuilder: network access will be disabled during build I: Current time: Thu Feb 8 16:14:29 +14 2024 I: pbuilder-time-stamp: 1707358469 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cbflib_0.9.6+dfsg1-2.dsc] I: copying [./cbflib_0.9.6+dfsg1.orig.tar.xz] I: copying [./cbflib_0.9.6+dfsg1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.S7G6uned/trustedkeys.kbx': General error gpgv: Signature made Tue Apr 21 08:24:04 2020 +14 gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB gpgv: issuer "picca@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cbflib_0.9.6+dfsg1-2.dsc dpkg-source: info: extracting cbflib in cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/48283/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' lrwxrwxrwx 1 root root 4 Feb 8 16:14 /bin/sh -> bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/48283/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/48283/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=74acd8813e9e4007aadc17963ff7328d LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=48283 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UaD7XKRv/pbuilderrc_Z5aP --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UaD7XKRv/b2 --logfile b2/build.log cbflib_0.9.6+dfsg1-2.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 6.0.0-0.deb11.6-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.0.12-1~bpo11+1 (2022-12-19) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 28 2022 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jan 21 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jan 21 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jan 21 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 21 2022 more -rwsr-xr-x 1 root root 55528 Jan 21 2022 mount -rwxr-xr-x 1 root root 18664 Jan 21 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 17 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Mar 28 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Feb 8 16:14 sh -> bash lrwxrwxrwx 1 root root 4 Jan 24 05:47 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jan 21 2022 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 21 2022 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 21 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/48283/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19704 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dbg; however: Package python3-all-dbg is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dbg{a} libpython3-all-dev{a} libpython3-dbg{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dbg{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} po-debconf{a} python3{a} python3-all{a} python3-all-dbg{a} python3-all-dev{a} python3-dbg{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dbg{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb gdb-minimal javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 73.6 MB of archives. After unpacking 269 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u3 [693 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 hdf5-helpers amd64 1.10.6+repack-4+deb11u1 [40.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [141 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libhdf5-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.7 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libhdf5-dev amd64 1.10.6+repack-4+deb11u1 [2438 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dbg amd64 3.9.2-1 [15.0 MB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libpython3-dbg amd64 3.9.2-3 [21.6 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dbg amd64 3.9.2-3 [1064 B] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libpython3-all-dev amd64 3.9.2-3 [1068 B] Get: 75 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 77 http://deb.debian.org/debian bullseye/main amd64 python3.9-dbg amd64 3.9.2-1 [20.5 MB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 python3-dbg amd64 3.9.2-3 [1224 B] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-all-dbg amd64 3.9.2-3 [1064 B] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-all-dev amd64 3.9.2-3 [1064 B] Fetched 73.6 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Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-4+deb11u1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u3) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.9-dbg:amd64 (3.9.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3-dbg:amd64 (3.9.2-3) ... Setting up libpython3-all-dbg:amd64 (3.9.2-3) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dbg (3.9.2-1) ... Setting up libhdf5-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-dbg (3.9.2-3) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-all (3.9.2-3) ... Setting up libpython3-all-dev:amd64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-all-dbg (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-13+deb11u5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/48283/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/48283/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/cbflib-0.9.6+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cbflib_0.9.6+dfsg1-2_source.changes dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Picca Frédéric-Emmanuel dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:232: python3.9-dbg setup.py clean running clean removing '/build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --with python3 --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/build/cbflib-0.9.6+dfsg1/lib -Dhdf5_prefix=/build/cbflib-0.9.6+dfsg1 -Dextra_compile_args=-I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /build/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: python3.9 setup.py config running config I: pybuild base:232: python3.9-dbg setup.py config running config make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /build/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /build/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /build/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c /build/cbflib-0.9.6+dfsg1/src/cbf.c: In function 'cbf_convert_dictionary_definition': /build/cbflib-0.9.6+dfsg1/src/cbf.c:5474:22: warning: 'itemname' may be used uninitialized in this function [-Wmaybe-uninitialized] 5474 | cbf_failnez( cbf_set_hashedvalue (cbfdictionary, itemname, "name", -1)) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfcat_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function 'cbf_read_h5file_group'; did you mean 'cbf_read_h5file'? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable 'indent' [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfdb_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable 'indent' [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable 'indent' [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable 'equipment_component' [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable 'close' [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable 'open' [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable 'type_order' set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable 'byte_order' [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable 'buffer' [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable 'atcbf' set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable 'atnexus' [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable 'errorcode' [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable 'node' [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: 'cbf_write_nx2cbf__cbfdb_op' defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: 'cbf_write_nx2cbf__cbfcat_op' defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2.isra': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: 'offset[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: 'offset[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: 'offset' may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string.part.0' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from 'cbf_set_minicbf_header' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function 'cbf_set_reference_beam_center': /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function 'cbf_lex_wrapper': /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/img.c:12: In function 'memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from 'img_free_handle' at /build/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: '__builtin___memcpy_chk' writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_free_handle': /build/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by 'malloc' here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /build/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:10: warning: unused variable 'thickness' [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:7: warning: variable 'cbf_status' set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function 'strncpy', inlined from 'gethd.constprop' at /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function 'gethd.constprop': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of 'convertroi' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected 'char *' but argument is of type 'const char *' 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of 'cbf_free_text' from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /build/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected 'const char **' but argument is of type 'char **' 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable 'valmax' set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable 'valnew' set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable 'kjcm' [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable 'kicm' [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:28: warning: variable 'smv_bin_type' set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of 'adscimg2cbf_sub2' makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected 'size_t' {aka 'long unsigned int'} but argument is of type 'void *' 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function 'strncpy', inlined from 'gethd.constprop' at /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'gethd.constprop': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function 'adscimg2cbf_sub2': /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:29: warning: '; ' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 1027) into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: 'smooth_data_as_int' may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function 'strncpy', inlined from 'gethd' at /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function 'gethd': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function 'padhd': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function 'cbfhandle2img_sub': /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:57: warning: variable 'dirinc' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable 'dirend' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:35: warning: variable 'dirsta' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:28: warning: variable 'second' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:21: warning: variable 'first' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:13: warning: variable 'colrow' set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /build/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2c bash: line 1: g: command not found make[2]: [Makefile:1771: /build/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /build/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /build/cbflib-0.9.6+dfsg1/src/cbf.c /build/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /build/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /build/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /build/cbflib-0.9.6+dfsg1/src/cbf_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /build/cbflib-0.9.6+dfsg1/src/cbf_codes.c /build/cbflib-0.9.6+dfsg1/src/cbf_compress.c /build/cbflib-0.9.6+dfsg1/src/cbf_context.c /build/cbflib-0.9.6+dfsg1/src/cbf_copy.c /build/cbflib-0.9.6+dfsg1/src/cbf_file.c /build/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /build/cbflib-0.9.6+dfsg1/src/cbf_lex.c /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /build/cbflib-0.9.6+dfsg1/src/cbf_packed.c /build/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c /build/cbflib-0.9.6+dfsg1/src/cbf_string.c /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c /build/cbflib-0.9.6+dfsg1/src/cbf_tree.c /build/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /build/cbflib-0.9.6+dfsg1/src/cbf_write.c /build/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /build/cbflib-0.9.6+dfsg1/src/cbf_ws.c /build/cbflib-0.9.6+dfsg1/src/cbff.c /build/cbflib-0.9.6+dfsg1/src/md5c.c /build/cbflib-0.9.6+dfsg1/src/img.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'cbf_validate' at /build/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function 'strncpy', inlined from 'cbf_copy_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function 'cbf_copy_string': /build/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfcat_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function 'cbf_read_h5file_group'; did you mean 'cbf_read_h5file'? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable 'indent' [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__cbfdb_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable 'indent' [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf__entry_op': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable 'indent' [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable 'nxpdb_found' [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_nx2cbf': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable 'node' set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable 'data_row' set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable 'diffrn_scan_axis' set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__array_structure_list_axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable 'rotation_axis_path' [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__cbf_general_axes': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable 'equipment_component' [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_write_cbf2nx__axis': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable 'axis_rotation_axis' set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_h5ds_store_as_column': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable 'close' [-Wunused-variable] 29166 | char open, close; | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable 'open' [-Wunused-variable] 29166 | char open, close; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable 'type_order' set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable 'byte_order' [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable 'buffer' [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_object_visit': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable 'checked_digest' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable 'type' set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable 'atcbf' set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable 'atnexus' [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_read_h5file_group': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable 'errorcode' [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable 'node' [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: 'cbf_write_nx2cbf__cbfdb_op' defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: 'cbf_write_nx2cbf__cbfcat_op' defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: 'cbf_require_nxdetectors' defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function 'cbf_get_nxdata_field_name2.isra': /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: '%06d' directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncat', inlined from 'cbf_create_h5handle2u' at /build/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: '__builtin___strncat_chk' output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string.part.0' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function 'cbf_append_string.part.0': /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function 'strncpy', inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from 'cbf_append_string' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from 'cbf_set_minicbf_header' at /build/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function 'cbf_compress_nibble_offset': /build/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: 'dmode[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function 'cbf_set_reference_beam_center': /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function 'cbf_lex_wrapper': /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable 'cbffile' set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /build/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: 'yytname' defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /build/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function 'strncpy', inlined from 'main' at /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /build/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /build/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /build/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /build/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 15 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /build/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/convert_image.c /build/cbflib-0.9.6+dfsg1/src/img.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable 'transpose' set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_read_mar345header': /build/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of 'char[65]' [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /build/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing 'C64' 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/src/img.c:12: In function 'memcpy', inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from 'img_set_tags' at /build/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from 'img_free_handle' at /build/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: '__builtin___memcpy_chk' writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/src/img.c: In function 'img_free_handle': /build/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by 'malloc' here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/cczxgrOu.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /build/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /build/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /build/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testcell bash: line 1: g: command not found make[2]: [Makefile:1762: /build/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /build/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /build/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testreals.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testflat.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /build/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /build/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /build/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/build/cbflib-0.9.6+dfsg1/lib /build/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /build/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-x86_64-3.9 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ../src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function 'cbf_handle_struct_set_image': pycbf_wrap.c:4074:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims': pycbf_wrap.c:4289:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_fs': pycbf_wrap.c:4383:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_sf': pycbf_wrap.c:4418:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_fs': pycbf_wrap.c:4460:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image': pycbf_wrap.c:4611:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_sf': pycbf_wrap.c:4634:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image': pycbf_wrap.c:4782:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims': pycbf_wrap.c:4832:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_fs': pycbf_wrap.c:4908:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_sf': pycbf_wrap.c:5004:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_sf': pycbf_wrap.c:5060:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image': pycbf_wrap.c:5091:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_sf': pycbf_wrap.c:5147:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray': pycbf_wrap.c:5223:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray': pycbf_wrap.c:5295:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_fs': pycbf_wrap.c:5380:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_fs': pycbf_wrap.c:5422:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_fs': pycbf_wrap.c:5447:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_sf': pycbf_wrap.c:5468:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: 'convert_iarray' defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: 'convert_larray' defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function 'get_error_message': pycbf_wrap.c:3510:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: '%s' directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:4980:9, inlined from '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf': pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:4366:9, inlined from '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf': pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'SWIG_Python_FixMethods' at pycbf_wrap.c:29493:15, inlined from 'PyInit__pycbf' at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/../src/cbf_simple.o build/temp.linux-x86_64-3.9/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so I: pybuild base:232: /usr/bin/python3-dbg setup.py build running build running build_py copying pycbf.py -> /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.9-pydebug x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -Og -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9d -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9-pydebug/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function 'cbf_set_reference_beam_center': ../src/cbf_simple.c:8587:44: warning: variable 'ncenter2' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable 'ncenter1' set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -Og -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/build/cbflib-0.9.6+dfsg1/include -I/usr/include/python3.9d -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9-pydebug/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function 'cbf_handle_struct_set_image': pycbf_wrap.c:4074:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims': pycbf_wrap.c:4289:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_fs': pycbf_wrap.c:4383:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_sf': pycbf_wrap.c:4418:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_fs': pycbf_wrap.c:4460:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image': pycbf_wrap.c:4611:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_sf': pycbf_wrap.c:4634:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image': pycbf_wrap.c:4782:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims': pycbf_wrap.c:4832:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_fs': pycbf_wrap.c:4908:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image_sf': pycbf_wrap.c:5004:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_sf': pycbf_wrap.c:5060:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_image': pycbf_wrap.c:5091:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_3d_image_sf': pycbf_wrap.c:5147:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray': pycbf_wrap.c:5223:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray': pycbf_wrap.c:5295:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_real_3d_image_fs': pycbf_wrap.c:5380:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_realarray_wdims_fs': pycbf_wrap.c:5422:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_integerarray_wdims_fs': pycbf_wrap.c:5447:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable 'ele' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function 'cbf_handle_struct_set_image_sf': pycbf_wrap.c:5468:15: warning: variable 'array' set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable 'els' set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: 'convert_iarray' defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: 'convert_larray' defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function 'get_error_message': pycbf_wrap.c:3510:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: '%s' directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: '%s' directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:4980:9, inlined from '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf' at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf': pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:4366:9, inlined from '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf' at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function '_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf': pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function 'strncpy', inlined from 'SWIG_Python_FixMethods' at pycbf_wrap.c:29493:15, inlined from 'PyInit__pycbf' at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9-pydebug/../src/cbf_simple.o build/temp.linux-x86_64-3.9-pydebug/pycbf_wrap.o -L../solib/ -L../lib/ -L/build/cbflib-0.9.6+dfsg1/lib -lcbf -o /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-x86_64-linux-gnu.so make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/build/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' mkdir -p /build/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /build/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /build/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function 'strncpy', inlined from 'main' at /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function 'main': /build/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /build/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/build/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/build/cbflib-0.9.6+dfsg1/include -I/build/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /build/cbflib-0.9.6+dfsg1/examples/testcell.C -L/build/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/lib/libcbf.a /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a #-chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #-cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.so cp /build/cbflib-0.9.6+dfsg1/solib/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -r -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #ln -s -f /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/lib_cbf.so chmod 644 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so # # includes # chmod -R 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /build/cbflib-0.9.6+dfsg1/include /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/convert_image /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/convert_minicbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/makecbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/img2cif /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cif2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cbf2nexus /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/nexus2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/sequence_match /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testalloc /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/arvai_test /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/cif2c /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testreals /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testflat /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testflatpacked /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /build/cbflib-0.9.6+dfsg1/bin/tiff2cbf /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /build/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/bin/testhdf5 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /build/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /build/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /build/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/build/cbflib-0.9.6+dfsg1' make[2]: '/build/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9 creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/pycbf.py -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:232: /usr/bin/python3-dbg setup.py install --root /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg running install running build running build_py running build_ext running install_lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9 creating /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-x86_64-linux-gnu.so -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /build/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/pycbf.py -> /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages byte-compiling /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /build/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_installchangelogs -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/build/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/build/cbflib-0.9.6+dfsg1' dh_python3 -O--no-parallel dh_installinit -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (5), cbflib-doc (230), libcbf-dev (37), libcbf1 (2), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (1), libcbf-dev (1), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installman: cbflib-bin (4), cbflib-doc (0), libcbf-dev (0), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-39-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf-dbg/usr/lib/python3/dist-packages/_pycbf.cpython-39d-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'libcbf1-dbgsym' in '../libcbf1-dbgsym_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'cbflib-bin-dbgsym' in '../cbflib-bin-dbgsym_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.6+dfsg1-2_all.deb'. dpkg-deb: building package 'python3-pycbf-dbgsym' in '../python3-pycbf-dbgsym_0.9.6+dfsg1-2_amd64.deb'. dpkg-deb: building package 'python3-pycbf-dbg' in '../python3-pycbf-dbg_0.9.6+dfsg1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cbflib_0.9.6+dfsg1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/48283/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/48283/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/48283 and its subdirectories I: Current time: Thu Feb 8 16:18:05 +14 2024 I: pbuilder-time-stamp: 1707358685