I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 1 15:49:45 +14 2022 I: pbuilder-time-stamp: 1669859385 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.dsc] I: copying [./python-pbcore_1.7.1+git20200430.a127b1e+dfsg.orig.tar.xz] I: copying [./python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.bECyucru/trustedkeys.kbx': General error gpgv: Signature made Wed May 6 05:55:17 2020 +14 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.dsc dpkg-source: info: extracting python-pbcore in python-pbcore-1.7.1+git20200430.a127b1e+dfsg dpkg-source: info: unpacking python-pbcore_1.7.1+git20200430.a127b1e+dfsg.orig.tar.xz dpkg-source: info: unpacking python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying doc-theme.patch dpkg-source: info: applying enable-build-time-testing.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/104045/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/104045/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/104045/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7f4561b15e5b46cbb478e4704c323ee4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=104045 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.awt5znWxZp/pbuilderrc_sOuU --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.awt5znWxZp/b2 --logfile b2/build.log python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 5 2021 bash -rwxr-xr-x 3 root root 38984 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 24 2020 cat -rwxr-xr-x 1 root root 72672 Sep 24 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 24 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 24 2020 chown -rwxr-xr-x 1 root root 151168 Sep 24 2020 cp -rwxr-xr-x 1 root root 125560 Dec 11 2020 dash -rwxr-xr-x 1 root root 113664 Sep 24 2020 date -rwxr-xr-x 1 root root 80968 Sep 24 2020 dd -rwxr-xr-x 1 root root 93936 Sep 24 2020 df -rwxr-xr-x 1 root root 147176 Sep 24 2020 dir -rwxr-xr-x 1 root root 84440 Jul 29 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 24 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 24 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 29 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 3 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 8 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 24 2020 ln -rwxr-xr-x 1 root root 56952 Feb 8 2020 login -rwxr-xr-x 1 root root 147176 Sep 24 2020 ls -rwxr-xr-x 1 root root 149736 Jul 29 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 24 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 24 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 24 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 29 2021 more -rwsr-xr-x 1 root root 55528 Jul 29 2021 mount -rwxr-xr-x 1 root root 18664 Jul 29 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 24 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 24 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 24 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 24 2020 rm -rwxr-xr-x 1 root root 52032 Sep 24 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Dec 1 15:49 sh -> bash lrwxrwxrwx 1 root root 4 Nov 24 08:04 sh.distrib -> dash -rwxr-xr-x 1 root root 43808 Sep 24 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 24 2020 stty -rwsr-xr-x 1 root root 71912 Jul 29 2021 su -rwxr-xr-x 1 root root 39744 Sep 24 2020 sync -rwxr-xr-x 1 root root 531928 Feb 17 2021 tar -rwxr-xr-x 1 root root 14456 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 24 2020 touch -rwxr-xr-x 1 root root 39680 Sep 24 2020 true -rwxr-xr-x 1 root root 14328 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 29 2021 umount -rwxr-xr-x 1 root root 39744 Sep 24 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 24 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 29 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/104045/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-sphinx, python3-all, python3-setuptools, python3-h5py, python3-numpy, python3-pysam (>= 0.13), python3-nose, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist, python3-pytest-cov, python3-biopython (>= 1.74), pylint, python3-coverage dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam (>= 0.13); however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython (>= 1.74); however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on pylint; however: Package pylint is not installed. pbuilder-satisfydepends-dummy depends on python3-coverage; however: Package python3-coverage is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} pylint{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-apipkg{a} python3-astroid{a} python3-attr{a} python3-babel{a} python3-biopython{a} python3-certifi{a} python3-chardet{a} python3-cov-core{a} python3-coverage{a} python3-distutils{a} python3-docutils{a} python3-execnet{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-isort{a} python3-jinja2{a} python3-lazy-object-proxy{a} python3-lib2to3{a} python3-logilab-common{a} python3-markupsafe{a} python3-mccabe{a} python3-minimal{a} python3-more-itertools{a} python3-mypy-extensions{a} python3-nose{a} python3-nose2{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-forked{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-toml{a} python3-typing-extensions{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3-wrapt{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-renderpm python3-tk wget 0 packages upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 52.5 MB of archives. After unpacking 215 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 mailcap all 3.69 [31.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 mime-support all 3.66 [10.9 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 sgml-base all 1.30 [15.1 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 openssl amd64 1.1.1k-1+deb11u1 [851 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+b1 [338 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libhdf5-103-1 amd64 1.10.6+repack-4+deb11u1 [1189 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libhdf5-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-metadata all 12-3 [7660 B] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-1.1 [6412 B] Get: 84 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 liblcms2-2 amd64 2.12~rc1-2 [150 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 liblzf1 amd64 3.6-3 [10.2 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libwebp6 amd64 0.6.1-2.1 [258 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libtiff5 amd64 4.2.0-1 [289 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 libwebpdemux2 amd64 0.6.1-2.1 [87.7 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libwebpmux3 amd64 0.6.1-2.1 [97.6 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 python3-lazy-object-proxy amd64 1.5.2-1 [20.5 kB] Get: 100 http://deb.debian.org/debian bullseye/main amd64 python3-wrapt amd64 1.12.1-4+b1 [39.3 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 python3-astroid all 2.5.1-1 [163 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 python3-isort all 5.6.4-1 [63.2 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 python3-mypy-extensions all 0.4.3-2 [5700 B] Get: 105 http://deb.debian.org/debian bullseye/main amd64 python3-typing-extensions all 3.7.4.3-1 [29.8 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 python3-logilab-common all 1.8.1-1 [379 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 python3-mccabe all 0.6.1-3 [9988 B] Get: 108 http://deb.debian.org/debian bullseye/main amd64 pylint all 2.7.2-3 [297 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 110 http://deb.debian.org/debian bullseye/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 python3-all amd64 3.9.2-3 [1056 B] Get: 112 http://deb.debian.org/debian bullseye/main amd64 python3-apipkg all 1.5-7 [9628 B] Get: 113 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 python3-tz all 2021.1-1 [34.8 kB] Get: 115 http://deb.debian.org/debian bullseye/main amd64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab-accel amd64 3.5.59-2 [39.1 kB] Get: 118 http://deb.debian.org/debian bullseye/main amd64 python3-pil amd64 8.1.2+dfsg-0.3 [445 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 python3-reportlab all 3.5.59-2 [575 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 python3-biopython amd64 1.78+dfsg-4 [1402 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 python3-certifi all 2020.6.20-1 [151 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 python3-coverage amd64 5.1+dfsg.1-2+b2 [169 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 python3-nose2 all 0.9.2-1 [94.1 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 python3-cov-core all 1.15.0-3 [7528 B] Get: 126 http://deb.debian.org/debian bullseye/main amd64 python3-roman all 2.0.0-5 [9064 B] Get: 127 http://deb.debian.org/debian bullseye/main amd64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 python3-execnet all 1.7.1-4 [41.1 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 python3-h5py-serial amd64 2.10.0-9+b2 [655 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 python3-h5py all 2.10.0-9 [11.4 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 python3-idna all 2.10-1 [37.4 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 python3-imagesize all 1.2.0-2 [5824 B] Get: 133 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 135 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 137 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 python3-nose all 1.3.7-7 [133 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-cov all 2.10.1-1 [23.5 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-forked all 1.3.0-1 [7432 B] Get: 149 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-runner all 2.11.1-1.2 [8528 B] Get: 150 http://deb.debian.org/debian bullseye/main amd64 python3-pytest-xdist all 2.2.0-1 [43.5 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 sphinx-common all 3.4.3-2 [578 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 python3-sphinx all 3.4.3-2 [545 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 python3-uritools all 3.0.0-2 [28.0 kB] Fetched 52.5 MB in 1s (88.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../5-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../6-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../7-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../8-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../9-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20548 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../4-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../6-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20993 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_1.1.1k-1+deb11u1_amd64.deb ... Unpacking openssl (1.1.1k-1+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. 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Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 1.7.1+git20200430.a127b1e+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' rm -f doc/pbcore.data.datasets.rst doc/pbcore.io.align.rst doc/pbcore.io.dataset.pyxb.rst rm -fr coverage.xml .eggs/README.txt .pytest_cache rm -rf .pybuild rm -rf _tmp doc/_build/ find . -name __pycache__ | xargs -r rm -rf rm -f .coverage nosetests.xml rm -rf pbcore.egg-info make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running build running build_py creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore copying pbcore/sequence.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore copying pbcore/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util copying pbcore/util/statistics.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util copying pbcore/util/decorators.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util copying pbcore/util/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util copying pbcore/util/ToolRunner.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/model copying pbcore/model/baseRegions.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/model copying pbcore/model/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/model creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/base.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/_utils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/VcfIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/GffIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/FofnIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/FastqIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io copying pbcore/io/FastaIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry copying pbcore/chemistry/chemistry.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry copying pbcore/chemistry/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/utils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/run_split.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetWriter.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetValidator.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetUtils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetReader.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMembers.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetErrors.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/_BamSupport.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/_AlignmentMixin.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/PacBioBamIndex.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/BlasrIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/BamIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbsample.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbrk.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbmeta.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/_pbbase.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb copying pbcore/io/dataset/pyxb/DataSetXsd.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets running egg_info creating pbcore.egg-info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt writing manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' copying pbcore/data/Fluidigm_human_amplicons.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/barcodes-ed65-450.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m4 -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/blasr-output.m5 -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/chemistry.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty.aligned_subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty.ccs.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty2.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/empty2.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/lambdaNEB.fa.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/variants.gff -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/weird.fa -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data copying pbcore/data/weird.fa.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/resources copying pbcore/chemistry/resources/mapping.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/resources copying pbcore/data/datasets/CollectionMetadata.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/alignment.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/barcode.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsaligned.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/ccsread.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/contig.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/fofn.fofn -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/lambda.referenceset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/reference.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subread.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets copying pbcore/data/datasets/subreadSetWithStats.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets /usr/bin/make doc make[2]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' sphinx-apidoc -o doc/ pbcore/ && cd doc/ && make html File doc/pbcore.rst already exists, skipping. File doc/pbcore.chemistry.rst already exists, skipping. File doc/pbcore.data.rst already exists, skipping. Creating file doc/pbcore.data.datasets.rst. File doc/pbcore.io.rst already exists, skipping. Creating file doc/pbcore.io.align.rst. File doc/pbcore.io.dataset.rst already exists, skipping. Creating file doc/pbcore.io.dataset.pyxb.rst. File doc/pbcore.model.rst already exists, skipping. File doc/pbcore.util.rst already exists, skipping. File doc/modules.rst already exists, skipping. make[3]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc' sphinx-apidoc -o . -d 4 ../pbcore/ File ./pbcore.rst already exists, skipping. File ./pbcore.chemistry.rst already exists, skipping. File ./pbcore.data.rst already exists, skipping. File ./pbcore.data.datasets.rst already exists, skipping. File ./pbcore.io.rst already exists, skipping. File ./pbcore.io.align.rst already exists, skipping. File ./pbcore.io.dataset.rst already exists, skipping. File ./pbcore.io.dataset.pyxb.rst already exists, skipping. File ./pbcore.model.rst already exists, skipping. File ./pbcore.util.rst already exists, skipping. File ./modules.rst already exists, skipping. sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v3.4.3 making output directory... done loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) building [mo]: targets for 0 po files that are out of date building [html]: targets for 12 source files that are out of date updating environment: [new config] 12 added, 0 changed, 0 removed reading sources... [ 8%] index reading sources... [ 16%] modules reading sources... [ 25%] pbcore reading sources... [ 33%] pbcore.chemistry reading sources... [ 41%] pbcore.data reading sources... [ 50%] pbcore.data.datasets reading sources... [ 58%] pbcore.io reading sources... [ 66%] pbcore.io.align reading sources... [ 75%] pbcore.io.dataset reading sources... [ 83%] pbcore.io.dataset.pyxb reading sources... [ 91%] pbcore.model reading sources... [100%] pbcore.util /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.rst:7: WARNING: toctree contains reference to nonexisting document 'pbcore.deprecated' WARNING: autodoc: failed to import module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'chemistry.chemistry' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'chemistry' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'data' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'data.datasets' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.BamAlignment' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.BamReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.IndexedBamReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaTable' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaRecord' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastaWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqRecord' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.FastqWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.Gff3Record' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.GffReader' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import class 'io.GffWriter' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BamAlignment' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BamIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.BlasrIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align.PacBioBamIndex' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.align' from module 'pbcore'; the following exception was raised: No module named 'pbcore' /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst:352: WARNING: Could not import class or module 'pbcore.io.dataset.DataSetIO' specified for inheritance diagram WARNING: autodoc: failed to import module 'io.dataset.DataSetIO' from module 'pbcore'; the following exception was raised: No module named 'pbcore' /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst:376: WARNING: Could not import class or module 'pbcore.io.dataset.DataSetMembers' specified for inheritance diagram WARNING: autodoc: failed to import module 'io.dataset.DataSetMembers' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.dataset.pyxb.DataSetXsd' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'io.dataset.pyxb' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'util.Process' from module 'pbcore'; the following exception was raised: No module named 'pbcore' WARNING: autodoc: failed to import module 'util.ToolRunner' from module 'pbcore'; the following exception was raised: No module named 'pbcore' looking for now-outdated files... none found pickling environment... done checking consistency... /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/modules.rst: WARNING: document isn't included in any toctree /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.data.datasets.rst: WARNING: document isn't included in any toctree /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.align.rst: WARNING: document isn't included in any toctree /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.rst: WARNING: document isn't included in any toctree /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc/pbcore.io.dataset.pyxb.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 8%] index writing output... [ 16%] modules writing output... [ 25%] pbcore writing output... [ 33%] pbcore.chemistry writing output... [ 41%] pbcore.data writing output... [ 50%] pbcore.data.datasets writing output... [ 58%] pbcore.io writing output... [ 66%] pbcore.io.align writing output... [ 75%] pbcore.io.dataset writing output... [ 83%] pbcore.io.dataset.pyxb writing output... [ 91%] pbcore.model writing output... [100%] pbcore.util generating indices... genindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 38 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[3]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/doc' make[2]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' # we need to exclude tests requiring pbtestdata which is not packaged mkdir -p /tmp/tests_avoid mv `grep -l pbtestdata tests/*.py` /tmp/tests_avoid # for whatever reason this test is failing as well - just skip it for the moment mv tests/test_pbdataset_filters.py /tmp/tests_avoid PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} setup.py test" \ dh_auto_test I: pybuild base:232: python3.9 setup.py test /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running pytest WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' running build_ext ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg, configfile: pytest.ini plugins: xdist-2.2.0, forked-1.3.0, cov-2.10.1 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I [gw0] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw1] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw2] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw3] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw4] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw5] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw6] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw7] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw8] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw9] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw10] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw11] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw12] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw13] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw14] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw15] linux Python 3.9.2 cwd: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg [gw0] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw1] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw2] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw3] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw4] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw5] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw6] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw8] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw9] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw10] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw7] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw11] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw13] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw12] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw15] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw14] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] gw0 [140] / gw1 [140] / gw2 [140] / gw3 [140] / gw4 [140] / gw5 [140] / gw6 [140] / gw7 [140] / gw8 [140] / gw9 [140] / gw10 [140] / gw11 [140] / gw12 [140] / gw13 [140] / gw14 [140] / gw15 [140] scheduling tests via LoadScopeScheduling tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_dataset_run_split.py::test tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ [gw13] [ 0%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ [gw13] [ 1%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta [gw12] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta [gw6] [ 2%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_FofnIO.py::test_simple [gw8] [ 3%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names [gw8] [ 4%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str [gw8] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification [gw8] [ 5%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification [gw0] [ 6%] SKIPPED tests/test_dataset_run_split.py::test tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs [gw0] [ 7%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations [gw4] [ 7%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable [gw4] [ 8%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement [gw1] [ 9%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties [gw9] [ 10%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw9] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers [gw2] [ 11%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation [gw2] [ 12%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName [gw2] [ 12%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead [gw2] [ 13%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead tests/test_pbcore_io_BlasrIO.py::test_m4 [gw11] [ 14%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 tests/test_pbcore_io_BlasrIO.py::test_m5 [gw11] [ 15%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ [gw1] [ 15%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ [gw1] [ 16%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString [gw1] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 [gw1] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 [gw1] [ 18%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 [gw15] [ 19%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 [gw15] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations [gw15] [ 20%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support [gw5] [ 21%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 [gw5] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw5] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 [gw1] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq [gw1] [ 24%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta [gw12] [ 25%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 [gw12] [ 25%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw12] [ 26%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv [gw13] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 [gw13] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 [gw13] [ 28%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len [gw13] [ 29%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq [gw13] [ 30%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString [gw8] [ 30%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw7] [ 31%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam [gw4] [ 32%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii [gw10] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs [gw0] [ 33%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader [gw7] [ 34%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs [gw10] [ 35%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations [gw3] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted [gw7] [ 36%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation [gw3] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation [gw6] [ 37%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw3] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead [gw8] [ 39%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get [gw14] [ 40%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration [gw7] [ 40%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff [gw2] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead tests/test_pbcore_io_FofnIO.py::test_empty_lines tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead [gw8] [ 42%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse [gw6] [ 42%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName [gw3] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement [gw8] [ 44%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement [gw14] [ 45%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference [gw8] [ 45%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement [gw2] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac [gw8] [ 47%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error [gw14] [ 47%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead [gw3] [ 48%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition [gw14] [ 49%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference [gw3] [ 50%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice [gw14] [ 50%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ [gw8] [ 51%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw14] [ 52%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta [gw3] [ 52%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference [gw9] [ 53%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV [gw3] [ 54%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript [gw4] [ 55%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference [gw3] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid [gw2] [ 56%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw3] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments [gw2] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript [gw11] [ 58%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted [gw2] [ 59%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw2] [ 60%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments [gw1] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal [gw4] [ 61%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype [gw9] [ 62%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange [gw0] [ 62%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy [gw4] [ 63%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix [gw4] [ 64%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw15] [ 65%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd [gw12] [ 65%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 [gw5] [ 66%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal [gw13] [ 67%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges [gw4] [ 67%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming [gw9] [ 68%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire [gw9] [ 69%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index [gw9] [ 70%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw10] [ 70%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord [gw7] [ 71%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error [gw8] [ 72%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error tests/test_pbcore_io_FofnIO.py::test_absolutifying [gw6] [ 72%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw14] [ 73%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex [gw2] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable [gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry [gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion [gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore [gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default [gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default [gw3] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable [gw3] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry [gw3] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV [gw3] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers [gw3] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers [gw0] [ 82%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts [gw3] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName [gw3] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam [gw3] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity [gw3] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw3] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed [gw0] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws [gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws [gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters [gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters [gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split [gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references [gw0] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter [gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit [gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks [gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split [gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows [gw0] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split [gw0] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name [gw0] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split [gw0] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded [gw0] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases [gw0] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks [gw0] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups [gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== /usr/lib/python3/dist-packages/_pytest/junitxml.py:446 /usr/lib/python3/dist-packages/_pytest/junitxml.py:446: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0. See: https://docs.pytest.org/en/stable/deprecations.html#junit-family-default-value-change-to-xunit2 for more information. _issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2) tests/test_pbcore_io_FastqIO.py: 11 warnings /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/pbcore/io/FastqIO.py:239: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return (np.clip(a, 0, 93).astype(np.uint8) + 33).tostring().decode("ascii") tests/test_pbcore_extract_bam_sequence.py: 1 warning tests/test_pbcore_io_AlnFileReaders.py: 118 warnings /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return _gusfieldTrans[uc].tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 28 warnings /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/pbcore/io/align/BamAlignment.py:583: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return r.tostring().decode("ascii") tests/test_pbcore_io_AlnFileReaders.py: 20 warnings /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return y.tostring().decode("ascii") -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated xml file: /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/nosetests.xml - ----------- coverage: platform linux, python 3.9.2-final-0 ----------- Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= 0.44s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks 0.35s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split 0.30s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize 0.26s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange 0.24s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange 0.22s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split 0.20s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws 0.15s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split 0.10s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed 0.08s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid 0.07s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations 0.06s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency 0.05s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows 0.04s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity 0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name 0.03s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta 0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations 0.03s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers 0.02s call tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta 0.01s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype ================ 122 passed, 18 skipped, 179 warnings in 10.31s ================ # copy working test data into doc dir as user examples mkdir -p _tmp/usr/share/doc/python3-pbcore cp -a tests _tmp/usr/share/doc/python3-pbcore find _tmp -type d -name __pycache__ | xargs rm -rf # move back ignored tests mv /tmp/tests_avoid/* tests rmdir /tmp/tests_avoid make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running install running build running build_py running egg_info writing pbcore.egg-info/PKG-INFO writing dependency_links to pbcore.egg-info/dependency_links.txt writing entry points to pbcore.egg-info/entry_points.txt writing requirements to pbcore.egg-info/requires.txt writing top-level names to pbcore.egg-info/top_level.txt reading manifest file 'pbcore.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' writing manifest file 'pbcore.egg-info/SOURCES.txt' creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__pycache__ copying pbcore/__pycache__/sequence.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/decorators.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__ copying pbcore/util/__pycache__/statistics.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastaIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FastqIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/FofnIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/GffIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/VcfIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/_utils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/base.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ copying pbcore/io/__pycache__/opener.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/__pycache__ copying pbcore/data/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__pycache__ copying pbcore/chemistry/__pycache__/chemistry.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetErrors.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMembers.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetReader.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetUtils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetValidator.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/DataSetWriter.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/run_split.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ copying pbcore/io/dataset/__pycache__/utils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamAlignment.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BamIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/BlasrIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/PacBioBamIndex.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_AlignmentMixin.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/_BamSupport.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ copying pbcore/io/align/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ copying pbcore/io/dataset/pyxb/__pycache__/DataSetXsd.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ copying pbcore/io/dataset/pyxb/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/__pycache__ copying pbcore/data/datasets/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/__pycache__ running install_lib creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9 creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__pycache__/sequence.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/resources copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/resources copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/chemistry/chemistry.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/weird.fa.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/weird.fa -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/variants.gff -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty2.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty.ccs.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/chemistry.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/blasr-output.m5 -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/blasr-output.m4 -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/datasets/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/data/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/opener.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/base.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/_utils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/BamIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/align/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__pycache__ creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__pycache__/DataSetXsd.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/DataSetXsd.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/_pbbase.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/_pbmeta.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/_pbrk.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/pyxb/_pbsample.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/run_split.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/dataset/utils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/FastaIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/FastqIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/FofnIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/GffIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/VcfIO.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/_utils.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/base.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/io/opener.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/model copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/model/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/model copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/model/baseRegions.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/model creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util creating /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__/statistics.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__/decorators.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__pycache__/__init__.cpython-39.pyc -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/__pycache__ copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/ToolRunner.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/decorators.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/util/statistics.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/__init__.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore copying /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/.pybuild/cpython3_3.9_pbcore/build/pbcore/sequence.py -> /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/DataSetXsd.py to DataSetXsd.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/_pbbase.py to _pbbase.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/_pbmeta.py to _pbmeta.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/_pbrk.py to _pbrk.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/pyxb/_pbsample.py to _pbsample.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/_utils.py to _utils.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/base.py to base.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/io/opener.py to opener.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/model/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/decorators.py to decorators.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/util/statistics.py to statistics.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore/sequence.py to sequence.cpython-39.pyc running install_egg_info Copying pbcore.egg-info to /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/lib/python3.9/dist-packages/pbcore-2.0.8.egg-info Skipping SOURCES.txt running install_scripts Installing .open script to /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin I: pybuild pybuild:310: chmod -x /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore//usr/lib/python3.9/dist-packages/pbcore/data/datasets/*.xml debian/rules override_dh_install make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_install mv /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin/.open /build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg/debian/python3-pbcore/usr/bin/pbopen make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_installdocs -X _source make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' debian/rules:54: warning: overriding recipe for target 'override_dh_auto_clean' debian/rules:27: warning: ignoring old recipe for target 'override_dh_auto_clean' dh_installchangelogs CHANGELOG.org make[1]: Leaving directory '/build/python-pbcore-1.7.1+git20200430.a127b1e+dfsg' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python-pbcore-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_all.deb'. dpkg-deb: building package 'python-pbcore-doc' in '../python-pbcore-doc_1.7.1+git20200430.a127b1e+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pbcore_1.7.1+git20200430.a127b1e+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/104045/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/104045/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/104045 and its subdirectories I: Current time: Thu Dec 1 15:51:08 +14 2022 I: pbuilder-time-stamp: 1669859468