I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 21 06:00:21 +14 2022 I: pbuilder-time-stamp: 1661011221 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bagel_1.2.2-2.dsc] I: copying [./bagel_1.2.2.orig.tar.gz] I: copying [./bagel_1.2.2-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.DWGQr1OZ/trustedkeys.kbx': General error gpgv: Signature made Sat Mar 13 02:50:06 2021 +14 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bagel_1.2.2-2.dsc dpkg-source: info: extracting bagel in bagel-1.2.2 dpkg-source: info: unpacking bagel_1.2.2.orig.tar.gz dpkg-source: info: unpacking bagel_1.2.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip_failing_testcases.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/21582/tmp/hooks/D01_modify_environment starting debug: Running on codethink9-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/21582/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/21582/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=21582 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NidSTvpbf8/pbuilderrc_n40e --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NidSTvpbf8/b2 --logfile b2/build.log --extrapackages usrmerge bagel_1.2.2-2.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 22 2021 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Feb 8 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 8 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Feb 8 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 8 2021 more -rwsr-xr-x 1 root root 51360 Feb 8 2021 mount -rwxr-xr-x 1 root root 14496 Feb 8 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 21 06:00 sh -> bash lrwxrwxrwx 1 root root 4 Aug 21 05:48 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Feb 8 2021 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 8 2021 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 8 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/21582/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-autoreconf, libblas-dev, libboost-python-dev, libboost-regex-dev, libboost-serialization-dev, libboost-test-dev, liblapack-dev, libmpich-dev, libxc-dev, python3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-autoreconf; however: Package dh-autoreconf is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-test-dev; however: Package libboost-test-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmpich-dev; however: Package libmpich-dev is not installed. pbuilder-satisfydepends-dummy depends on libxc-dev; however: Package libxc-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} hwloc-nox{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libhwloc15{a} libicu-dev{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libmpich-dev{a} libmpich12{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libslurm36{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxc-dev{a} libxc5{a} libxml2{a} m4{a} man-db{a} media-types{a} mpich{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libhwloc-plugins libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 76.4 MB of archives. After unpacking 450 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gfortran arm64 4:10.2.1-1 [1424 B] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libhwloc15 arm64 2.4.1+dfsg-1 [131 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 hwloc-nox arm64 2.4.1+dfsg-1 [174 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74.0 arm64 1.74.0-9 [305 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74-dev arm64 1.74.0-9 [331 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libboost-python-dev arm64 1.74.0.3 [4632 B] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74.0 arm64 1.74.0-9 [473 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74-dev arm64 1.74.0-9 [549 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libboost-regex-dev arm64 1.74.0.3 [4596 B] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74.0 arm64 1.74.0-9 [331 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74-dev arm64 1.74.0-9 [381 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization-dev arm64 1.74.0.3 [4560 B] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74.0 arm64 1.74.0-9 [445 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74-dev arm64 1.74.0-9 [537 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libboost-test-dev arm64 1.74.0.3 [4368 B] Get: 79 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libmpich12 arm64 3.4.1-4 [1661 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libslurm36 arm64 20.11.4-1 [610 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 mpich arm64 3.4.1-4 [189 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libmpich-dev arm64 3.4.1-4 [2209 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libxc5 arm64 4.3.4-2 [2017 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libxc-dev arm64 4.3.4-2 [2689 kB] Fetched 76.4 MB in 2s (32.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.2.10-2) ... Setting up libboost-test1.74.0:arm64 (1.74.0-9) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libboost-regex1.74.0:arm64 (1.74.0-9) ... Setting up libhwloc15:arm64 (2.4.1+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libboost-serialization1.74.0:arm64 (1.74.0-9) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libmpich12:arm64 (3.4.1-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:arm64 (10.2.1-6) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-python1.74.0 (1.74.0-9) ... Setting up libboost-test1.74-dev:arm64 (1.74.0-9) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libicu-dev:arm64 (67.1-7) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libblas-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libxc5:arm64 (4.3.4-2) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up hwloc-nox (2.4.1+dfsg-1) ... Setting up libxc-dev (4.3.4-2) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libboost-test-dev:arm64 (1.74.0.3) ... Setting up liblapack-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up gfortran-10 (10.2.1-6) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:arm64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:arm64 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up libboost-regex-dev:arm64 (1.74.0.3) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up mpich (3.4.1-4) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up libmpich-dev:arm64 (3.4.1-4) ... update-alternatives: using /usr/include/aarch64-linux-gnu/mpich to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libboost-serialization-dev:arm64 (1.74.0.3) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (1248 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 38812 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/bagel-1.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bagel_1.2.2-2_source.changes dpkg-buildpackage: info: source package bagel dpkg-buildpackage: info: source version 1.2.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean --max-parallel=1 --with autoreconf debian/rules override_dh_auto_clean make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_clean rm -rf /build/bagel-1.2.2/src/testsuite make[1]: Leaving directory '/build/bagel-1.2.2' dh_autoreconf_clean -O--max-parallel=1 dh_clean -O--max-parallel=1 debian/rules build dh build --max-parallel=1 --with autoreconf dh_update_autotools_config -O--max-parallel=1 dh_autoreconf -O--max-parallel=1 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:17: installing './compile' configure.ac:39: installing './config.guess' configure.ac:39: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bagel-1.2.2' if [ -f /proc/meminfo ]; then cat /proc/meminfo; fi MemTotal: 65974576 kB MemFree: 56951628 kB MemAvailable: 63174716 kB Buffers: 257176 kB Cached: 6126256 kB SwapCached: 0 kB Active: 4210472 kB Inactive: 2291076 kB Active(anon): 724208 kB Inactive(anon): 943788 kB Active(file): 3486264 kB Inactive(file): 1347288 kB Unevictable: 0 kB Mlocked: 0 kB SwapTotal: 63963132 kB SwapFree: 63961084 kB Dirty: 692 kB Writeback: 0 kB AnonPages: 118492 kB Mapped: 78196 kB Shmem: 1549880 kB Slab: 2212208 kB SReclaimable: 1419552 kB SUnreclaim: 792656 kB KernelStack: 3136 kB PageTables: 2312 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB CommitLimit: 96950420 kB Committed_AS: 1902432 kB VmallocTotal: 135290290112 kB VmallocUsed: 0 kB VmallocChunk: 0 kB HardwareCorrupted: 0 kB AnonHugePages: 0 kB ShmemHugePages: 0 kB ShmemPmdMapped: 0 kB CmaTotal: 0 kB CmaFree: 0 kB HugePages_Total: 0 HugePages_Free: 0 HugePages_Rsvd: 0 HugePages_Surp: 0 Hugepagesize: 2048 kB dh_auto_configure -- \ --datadir=/usr/share/bagel \ --libdir=/usr/lib/bagel \ --enable-static \ --disable-shared \ --with-boost \ --with-boost-libdir=/usr/lib/aarch64-linux-gnu \ --with-libxc=yes \ --with-mpi=openmpi \ --disable-scalapack \ --enable-smith ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --datadir=/usr/share/bagel --libdir=/usr/lib/bagel --enable-static --disable-shared --with-boost --with-boost-libdir=/usr/lib/aarch64-linux-gnu --with-libxc=yes --with-mpi=openmpi --disable-scalapack --enable-smith checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for python... no checking for python2... no checking for python3... /usr/bin/python3 checking for python version... 3.9 checking for python platform... linux checking for python script directory... ${prefix}/lib/python3.9/site-packages checking for python extension module directory... ${exec_prefix}/lib/python3.9/site-packages checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none ..openmpi requested.. checking for mpicc... mpicc checking for mpicxx... mpicxx checking whether we are using the GNU C compiler... (cached) yes checking whether mpicc accepts -g... (cached) yes checking for mpicc option to accept ISO C89... (cached) none needed checking whether mpicc understands -c and -o together... (cached) yes checking dependency style of mpicc... (cached) none checking whether we are using the GNU C++ compiler... (cached) yes checking whether mpicxx accepts -g... (cached) yes checking dependency style of mpicxx... (cached) none checking whether mpicxx supports C++11 features by default... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from mpicc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... no checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the mpicxx linker (/usr/bin/ld) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for boostlib >= 1.53... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Unit_Test_Framework library is available... yes configure: WARNING: BOOST_CPPFLAGS -I/usr/include checking whether the Boost::Serialization library is available... yes checking for exit in -lboost_serialization... yes checking xc.h usability... yes checking xc.h presence... yes checking for xc.h... yes checking for main in -lxc... yes checking for zgemm3m_... no checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/util/Makefile config.status: creating src/util/input/Makefile config.status: creating src/util/io/Makefile config.status: creating src/util/parallel/Makefile config.status: creating src/util/math/Makefile config.status: creating src/asd/multisite/Makefile config.status: creating src/asd/dimer/Makefile config.status: creating src/asd/dmrg/Makefile config.status: creating src/asd/orbital/Makefile config.status: creating src/asd/Makefile config.status: creating src/wfn/Makefile config.status: creating src/grad/Makefile config.status: creating src/integral/Makefile config.status: creating src/scf/Makefile config.status: creating src/df/Makefile config.status: creating src/prop/Makefile config.status: creating src/smith/Makefile config.status: creating src/molecule/Makefile config.status: creating src/pt2/Makefile config.status: creating src/ci/Makefile config.status: creating src/ci/ciutil/Makefile config.status: creating src/ci/fci/Makefile config.status: creating src/ci/zfci/Makefile config.status: creating src/ci/ras/Makefile config.status: creating src/response/Makefile config.status: creating src/multi/Makefile config.status: creating src/multi/casscf/Makefile config.status: creating src/multi/zcasscf/Makefile config.status: creating src/mat1e/Makefile config.status: creating src/opt/Makefile config.status: creating src/basis/Makefile config.status: creating bagel_config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/bagel-1.2.2' dh_auto_build -O--max-parallel=1 make -j1 make[1]: Entering directory '/build/bagel-1.2.2' make all-recursive make[2]: Entering directory '/build/bagel-1.2.2' Making all in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making all in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making all in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o process.lo process.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c process.cc -o process.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o mpi_interface.lo mpi_interface.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c mpi_interface.cc -o mpi_interface.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o rmawindow.lo rmawindow.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c rmawindow.cc -o rmawindow.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o resources.lo resources.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c resources.cc -o resources.o /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_parallel.la process.lo mpi_interface.lo rmawindow.lo resources.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_parallel.a process.o mpi_interface.o rmawindow.o resources.o libtool: link: ranlib .libs/libbagel_parallel.a libtool: link: ( cd ".libs" && rm -f "libbagel_parallel.la" && ln -s "../libbagel_parallel.la" "libbagel_parallel.la" ) make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making all in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moldenin.lo moldenin.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moldenin.cc -o moldenin.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moldenout.lo moldenout.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moldenout.cc -o moldenout.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o moldenio.lo moldenio.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c moldenio.cc -o moldenio.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o molden_transforms.lo molden_transforms.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c molden_transforms.cc -o molden_transforms.o /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o dfpcmo.lo dfpcmo.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c dfpcmo.cc -o dfpcmo.o /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_io.la moldenin.lo moldenout.lo moldenio.lo molden_transforms.lo dfpcmo.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_io.a moldenin.o moldenout.o moldenio.o molden_transforms.o dfpcmo.o libtool: link: ranlib .libs/libbagel_io.a libtool: link: ( cd ".libs" && rm -f "libbagel_io.la" && ln -s "../libbagel_io.la" "libbagel_io.la" ) make[5]: Leaving directory '/build/bagel-1.2.2/src/util/io' Making all in input make[5]: Entering directory '/build/bagel-1.2.2/src/util/input' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -DBASIS_DIR=\"/usr/share/bagel\" -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o libbagel_input_la-input.lo `test -f 'input.cc' || echo './'`input.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -DBASIS_DIR=\"/usr/share/bagel\" -g1 -O2 -DNDEBUG -DZDOT_RETURN -c input.cc -o libbagel_input_la-input.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/serialization/shared_ptr.hpp:27, from ../../../src/util/serialization.h:53, from ../../../src/util/input/input.h:31, from input.cc:27: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. 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-I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o ecp/_sphusp_0.lo ecp/_sphusp_0.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c ecp/_sphusp_0.cc -o ecp/_sphusp_0.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o ecp/_sphusp_1.lo ecp/_sphusp_1.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c ecp/_sphusp_1.cc -o ecp/_sphusp_1.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o ecp/_sphusp_2.lo ecp/_sphusp_2.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c 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-I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c ecp/_sphusp_10.cc -o ecp/_sphusp_10.o /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_integral.la hrrlist.lo carsphlist.lo sort.lo sort_sph.lo csort.lo csort_sph.lo sortlist.lo _hrr_20_11.lo _hrr_40_31.lo _hrr_60_33.lo _hrr_70_43.lo _hrr_80_44.lo _hrr_90_54.lo _hrr_a0_64.lo _hrr_30_21.lo _hrr_50_32.lo _hrr_60_42.lo _hrr_70_52.lo _hrr_80_53.lo _hrr_90_63.lo _hrr_b0_65.lo _hrr_40_22.lo _hrr_50_41.lo _hrr_60_51.lo _hrr_70_61.lo _hrr_80_62.lo _hrr_a0_55.lo _hrr_c0_66.lo _hrr_80_71.lo _hrr_90_72.lo _hrr_a0_73.lo _hrr_b0_74.lo _hrr_c0_75.lo _hrr_d0_76.lo _hrr_e0_77.lo _carsph_00.lo _carsph_10.lo _carsph_20.lo _carsph_30.lo _carsph_40.lo _carsph_50.lo _carsph_60.lo _carsph_70.lo _carsph_11.lo _carsph_21.lo _carsph_31.lo _carsph_41.lo _carsph_51.lo _carsph_61.lo _carsph_71.lo _carsph_22.lo _carsph_32.lo _carsph_42.lo _carsph_52.lo _carsph_62.lo _carsph_72.lo _carsph_33.lo _carsph_43.lo _carsph_53.lo _carsph_63.lo _carsph_73.lo _carsph_44.lo _carsph_54.lo _carsph_64.lo _carsph_74.lo _carsph_55.lo _carsph_65.lo _carsph_75.lo _carsph_66.lo _carsph_76.lo _carsph_77.lo rys/vrr.lo rys/gvrr.lo rys/bvrr.lo rys/svrr.lo rys/usvrr.lo rys/s2vrr.lo comprys/cvrr.lo rys/_eriroot_1.lo rys/_eriroot_2.lo rys/_eriroot_3.lo rys/_eriroot_4.lo rys/_eriroot_5.lo rys/_eriroot_6.lo rys/_eriroot_7.lo rys/_eriroot_8.lo rys/_eriroot_9.lo rys/_eriroot_10.lo rys/_eriroot_11.lo rys/_eriroot_12.lo rys/_eriroot_13.lo rys/_eriroot_14.lo rys/_eriroot_15.lo rys/_eriroot_16.lo rys/_eriroot_17.lo rys/_eriroot_18.lo rys/_eriroot_19.lo rys/_eriroot_20.lo rys/_eriroot_21.lo rys/_eriroot_22.lo rys/_eriroot_23.lo rys/_eriroot_24.lo rys/_eriroot_25.lo rys/_eriroot_26.lo rys/_eriroot_27.lo rys/_eriroot_28.lo rys/_eriroot_29.lo rys/_eriroot_30.lo rys/_eriroot_31.lo rys/_eriroot_32.lo rys/_eriroot_33.lo rys/_eriroot_34.lo 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rys/_breitroot_4.lo rys/_breitroot_5.lo rys/_breitroot_6.lo rys/_breitroot_7.lo rys/_breitroot_8.lo rys/_breitroot_9.lo rys/_breitroot_10.lo rys/_breitroot_11.lo rys/_breitroot_12.lo rys/_breitroot_13.lo rys/_spin2root_1.lo rys/_spin2root_2.lo rys/_spin2root_3.lo rys/_spin2root_4.lo rys/_spin2root_5.lo rys/_spin2root_6.lo rys/_spin2root_7.lo rys/_spin2root_8.lo rys/_spin2root_9.lo rys/_spin2root_10.lo rys/_spin2root_11.lo rys/_spin2root_12.lo rys/_spin2root_13.lo compos/complexoverlapbatch.lo compos/covrr.lo compos/complexkineticbatch.lo compos/complexmomentumbatch.lo compos/complexangmombatch.lo compos/point_complexmomentumbatch.lo compos/point_complexoverlapbatch.lo os/point_overlapbatch.lo comprys/complexeribatch.lo rys/eribatch.lo rys/gradbatch.lo rys/gnaibatch.lo rys/slaterbatch.lo rys/breitbatch.lo rys/rysintegral.lo rys/coulombbatch_base.lo rys/coulombbatch_energy.lo rys/compute.lo comprys/ccompute.lo rys/bcompute.lo rys/gcompute.lo rys/gncompute.lo rys/scompute.lo rys/vrr_optim.lo rys/bvrr_optim.lo rys/svrr_optim.lo rys/usvrr_optim.lo rys/naibatch.lo rys/spindipolebatch.lo comprys/complexnaibatch.lo rys/r0batch.lo rys/r1batch.lo rys/r2batch.lo rys/eribatch_base.lo rys/smalleribatch.lo rys/mixederibatch.lo rys/gsmallnaibatch.lo rys/gsmalleribatch.lo comprys/complexsmalleribatch.lo comprys/complexmixederibatch.lo os/overlapbatch.lo os/ovrr.lo os/kineticbatch.lo os/mmbatch.lo os/momentumbatch.lo os/gocompute.lo os/gkcompute.lo os/gmcompute.lo os/osintegral.lo os/angmombatch.lo os/multipolebatch_base.lo os/multipolebatch.lo libint/libint.lo libint/glibint.lo ecp/angularbatch.lo ecp/ecpbatch.lo ecp/radial.lo ecp/soangularbatch.lo ecp/soecpbatch.lo ecp/_sphusp_0.lo ecp/_sphusp_1.lo ecp/_sphusp_2.lo ecp/_sphusp_3.lo ecp/_sphusp_4.lo ecp/_sphusp_5.lo ecp/_sphusp_6.lo ecp/_sphusp_7.lo ecp/_sphusp_8.lo ecp/_sphusp_9.lo ecp/_sphusp_10.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_integral.a hrrlist.o carsphlist.o sort.o sort_sph.o csort.o csort_sph.o sortlist.o _hrr_20_11.o _hrr_40_31.o _hrr_60_33.o _hrr_70_43.o _hrr_80_44.o _hrr_90_54.o _hrr_a0_64.o _hrr_30_21.o _hrr_50_32.o _hrr_60_42.o _hrr_70_52.o _hrr_80_53.o _hrr_90_63.o _hrr_b0_65.o _hrr_40_22.o _hrr_50_41.o _hrr_60_51.o _hrr_70_61.o _hrr_80_62.o _hrr_a0_55.o _hrr_c0_66.o _hrr_80_71.o _hrr_90_72.o _hrr_a0_73.o _hrr_b0_74.o _hrr_c0_75.o _hrr_d0_76.o _hrr_e0_77.o _carsph_00.o _carsph_10.o _carsph_20.o _carsph_30.o _carsph_40.o _carsph_50.o _carsph_60.o _carsph_70.o _carsph_11.o _carsph_21.o _carsph_31.o _carsph_41.o _carsph_51.o _carsph_61.o _carsph_71.o _carsph_22.o _carsph_32.o _carsph_42.o _carsph_52.o _carsph_62.o _carsph_72.o _carsph_33.o _carsph_43.o _carsph_53.o _carsph_63.o _carsph_73.o _carsph_44.o _carsph_54.o _carsph_64.o _carsph_74.o _carsph_55.o _carsph_65.o _carsph_75.o _carsph_66.o _carsph_76.o _carsph_77.o rys/vrr.o rys/gvrr.o rys/bvrr.o rys/svrr.o rys/usvrr.o rys/s2vrr.o comprys/cvrr.o rys/_eriroot_1.o rys/_eriroot_2.o rys/_eriroot_3.o rys/_eriroot_4.o rys/_eriroot_5.o rys/_eriroot_6.o rys/_eriroot_7.o rys/_eriroot_8.o rys/_eriroot_9.o rys/_eriroot_10.o rys/_eriroot_11.o rys/_eriroot_12.o rys/_eriroot_13.o rys/_eriroot_14.o rys/_eriroot_15.o rys/_eriroot_16.o rys/_eriroot_17.o rys/_eriroot_18.o rys/_eriroot_19.o rys/_eriroot_20.o rys/_eriroot_21.o rys/_eriroot_22.o rys/_eriroot_23.o rys/_eriroot_24.o rys/_eriroot_25.o rys/_eriroot_26.o rys/_eriroot_27.o rys/_eriroot_28.o rys/_eriroot_29.o rys/_eriroot_30.o rys/_eriroot_31.o rys/_eriroot_32.o rys/_eriroot_33.o rys/_eriroot_34.o rys/_eriroot_35.o rys/_eriroot_36.o rys/_eriroot_37.o rys/_eriroot_38.o rys/_eriroot_39.o rys/_eriroot_40.o rys/_eriroot_41.o rys/_eriroot_42.o rys/_eriroot_43.o rys/_eriroot_44.o rys/_eriroot_45.o rys/_eriroot_46.o rys/_eriroot_47.o rys/_eriroot_48.o rys/_eriroot_49.o rys/_eriroot_50.o rys/_r2root_1.o rys/_r2root_2.o rys/_r2root_3.o rys/_r2root_4.o rys/_r2root_5.o 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rys/_spin2root_13.o compos/complexoverlapbatch.o compos/covrr.o compos/complexkineticbatch.o compos/complexmomentumbatch.o compos/complexangmombatch.o compos/point_complexmomentumbatch.o compos/point_complexoverlapbatch.o os/point_overlapbatch.o comprys/complexeribatch.o rys/eribatch.o rys/gradbatch.o rys/gnaibatch.o rys/slaterbatch.o rys/breitbatch.o rys/rysintegral.o rys/coulombbatch_base.o rys/coulombbatch_energy.o rys/compute.o comprys/ccompute.o rys/bcompute.o rys/gcompute.o rys/gncompute.o rys/scompute.o rys/vrr_optim.o rys/bvrr_optim.o rys/svrr_optim.o rys/usvrr_optim.o rys/naibatch.o rys/spindipolebatch.o comprys/complexnaibatch.o rys/r0batch.o rys/r1batch.o rys/r2batch.o rys/eribatch_base.o rys/smalleribatch.o rys/mixederibatch.o rys/gsmallnaibatch.o rys/gsmalleribatch.o comprys/complexsmalleribatch.o comprys/complexmixederibatch.o os/overlapbatch.o os/ovrr.o os/kineticbatch.o os/mmbatch.o os/momentumbatch.o os/gocompute.o os/gkcompute.o os/gmcompute.o os/osintegral.o 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compute_mep.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c compute_mep.cc -o compute_mep.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o update.lo update.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c update.cc -o update.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o qmmm.lo qmmm.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c qmmm.cc -o qmmm.o qmmm.cc: In member function 'void bagel::QMMM_Tinker::edit_tinker_input(std::shared_ptr) const': qmmm.cc:39:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | system("mv -f tinkin.xyz tinkin.xyz.old"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc: In member function 'virtual void bagel::QMMM_Tinker::edit_input(std::shared_ptr) const': qmmm.cc:73:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 73 | chdir("tinker1"); | ~~~~~^~~~~~~~~~~ qmmm.cc:77:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:78:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 78 | system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qmmm"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:82:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 82 | system(pp.c_str()); | ~~~~~~^~~~~~~~~~~~ qmmm.cc:85:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 85 | chdir("../"); | ~~~~~^~~~~~~ qmmm.cc:87:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 87 | chdir("tinker2"); | ~~~~~^~~~~~~~~~~ qmmm.cc:91:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 91 | system("testgrad -k tinkin.key tinkin.xyz y n n > gradientls"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:92:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | system("grep 'Total Potential' gradientls | cut -c 29- > ../energy_qm"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ qmmm.cc:96:11: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | system(pp.c_str()); | ~~~~~~^~~~~~~~~~~~ qmmm.cc:99:8: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | chdir("../"); | ~~~~~^~~~~~~ /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_opt.la optimize.lo opt.lo get_grad.lo constraint.lo compute_opt.lo compute_mep.lo update.lo qmmm.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_opt.a optimize.o opt.o get_grad.o constraint.o compute_opt.o compute_mep.o update.o qmmm.o libtool: 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caspt2/MSCASPT2_tasks12.o caspt2/MSCASPT2_shift.o caspt2/MSCASPT2_contract.o mrci/MRCI.o mrci/MRCI_gamma.o mrci/MRCI_sourceq.o mrci/MRCI_normq.o mrci/MRCI_residualq1.o mrci/MRCI_residualq2.o mrci/MRCI_residualq3.o mrci/MRCI_residualq4.o mrci/MRCI_residualq5.o mrci/MRCI_residualq6.o mrci/MRCI_residualq7.o mrci/MRCI_residualq8.o mrci/MRCI_residualq9.o mrci/MRCI_tasks1.o mrci/MRCI_tasks2.o mrci/MRCI_tasks3.o mrci/MRCI_tasks4.o mrci/MRCI_tasks5.o mrci/MRCI_tasks6.o mrci/MRCI_tasks7.o mrci/MRCI_tasks8.o mrci/MRCI_tasks9.o mrci/MRCI_tasks10.o mrci/MRCI_tasks11.o mrci/MRCI_tasks12.o mrci/MRCI_tasks13.o mrci/MRCI_tasks14.o mrci/MRCI_tasks15.o mrci/MRCI_tasks16.o mrci/MRCI_tasks17.o mrci/MRCI_tasks18.o mrci/MRCI_tasks19.o mrci/MRCI_tasks20.o mrci/MRCI_gen1.o mrci/MRCI_gen2.o mrci/MRCI_gen3.o mrci/MRCI_gen4.o mrci/MRCI_gen5.o mrci/MRCI_gen6.o mrci/MRCI_gen7.o mrci/MRCI_gen8.o mrci/MRCI_gen9.o mrci/MRCI_gen10.o mrci/MRCI_gen11.o mrci/MRCI_gen12.o mrci/MRCI_gen13.o mrci/MRCI_gen14.o mrci/MRCI_gen15.o mrci/MRCI_gen16.o mrci/MRCI_gen17.o mrci/MRCI_gen18.o mrci/MRCI_gen19.o mrci/MRCI_gen20.o relcaspt2/RelCASPT2.o relcaspt2/RelCASPT2_gamma.o relcaspt2/RelCASPT2_residualq.o relcaspt2/RelCASPT2_normq.o relcaspt2/RelCASPT2_sourceq.o relcaspt2/RelCASPT2_gen1.o relcaspt2/RelCASPT2_gen2.o relcaspt2/RelCASPT2_gen3.o relcaspt2/RelCASPT2_gen4.o relcaspt2/RelCASPT2_gen5.o relcaspt2/RelCASPT2_gen6.o relcaspt2/RelCASPT2_tasks1.o relcaspt2/RelCASPT2_tasks2.o relcaspt2/RelCASPT2_tasks3.o relcaspt2/RelCASPT2_tasks4.o relcaspt2/RelCASPT2_tasks5.o relcaspt2/RelCASPT2_tasks6.o casa/CASA.o casa/CASA_gamma.o casa/CASA_residualq.o casa/CASA_sourceq.o casa/CASA_gen1.o casa/CASA_gen2.o casa/CASA_gen3.o casa/CASA_gen4.o casa/CASA_gen5.o casa/CASA_gen6.o casa/CASA_tasks1.o casa/CASA_tasks2.o casa/CASA_tasks3.o casa/CASA_tasks4.o casa/CASA_tasks5.o casa/CASA_tasks6.o relcasa/RelCASA.o relcasa/RelCASA_gamma.o relcasa/RelCASA_residualq.o relcasa/RelCASA_sourceq.o relcasa/RelCASA_gen1.o relcasa/RelCASA_gen2.o relcasa/RelCASA_gen3.o relcasa/RelCASA_gen4.o relcasa/RelCASA_gen5.o relcasa/RelCASA_gen6.o relcasa/RelCASA_tasks1.o relcasa/RelCASA_tasks2.o relcasa/RelCASA_tasks3.o relcasa/RelCASA_tasks4.o relcasa/RelCASA_tasks5.o relcasa/RelCASA_tasks6.o relmrci/RelMRCI.o relmrci/RelMRCI_gamma.o relmrci/RelMRCI_sourceq.o relmrci/RelMRCI_normq.o relmrci/RelMRCI_residualq1.o relmrci/RelMRCI_residualq2.o relmrci/RelMRCI_residualq3.o relmrci/RelMRCI_residualq4.o relmrci/RelMRCI_residualq5.o relmrci/RelMRCI_residualq6.o relmrci/RelMRCI_tasks1.o relmrci/RelMRCI_tasks2.o relmrci/RelMRCI_tasks3.o relmrci/RelMRCI_tasks4.o relmrci/RelMRCI_tasks5.o relmrci/RelMRCI_tasks6.o relmrci/RelMRCI_tasks7.o relmrci/RelMRCI_tasks8.o relmrci/RelMRCI_tasks9.o relmrci/RelMRCI_tasks10.o relmrci/RelMRCI_tasks11.o relmrci/RelMRCI_tasks12.o relmrci/RelMRCI_tasks13.o relmrci/RelMRCI_tasks14.o relmrci/RelMRCI_tasks15.o relmrci/RelMRCI_tasks16.o relmrci/RelMRCI_gen1.o relmrci/RelMRCI_gen2.o relmrci/RelMRCI_gen3.o relmrci/RelMRCI_gen4.o relmrci/RelMRCI_gen5.o relmrci/RelMRCI_gen6.o relmrci/RelMRCI_gen7.o relmrci/RelMRCI_gen8.o relmrci/RelMRCI_gen9.o relmrci/RelMRCI_gen10.o relmrci/RelMRCI_gen11.o relmrci/RelMRCI_gen12.o relmrci/RelMRCI_gen13.o relmrci/RelMRCI_gen14.o relmrci/RelMRCI_gen15.o relmrci/RelMRCI_gen16.o libtool: link: ranlib .libs/libbagel_smith.a libtool: link: ( cd ".libs" && rm -f "libbagel_smith.la" && ln -s "../libbagel_smith.la" "libbagel_smith.la" ) make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making all in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o multipole.lo multipole.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c multipole.cc -o multipole.o /bin/sh 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-Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c momentum_london.cc -o momentum_london.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o momentum_point.lo momentum_point.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c momentum_point.cc -o momentum_point.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o current.lo current.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c current.cc -o current.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 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sphmultipole.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o pseudospin/stevensop.lo pseudospin/stevensop.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c pseudospin/stevensop.cc -o pseudospin/stevensop.o /bin/sh ../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o pseudospin/pseudospin.lo pseudospin/pseudospin.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c pseudospin/pseudospin.cc -o pseudospin/pseudospin.o /bin/sh ../../libtool --tag=CXX --mode=link mpicxx -I../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_prop.la multipole.lo hyperfine.lo momentum.lo momentum_london.lo momentum_point.lo current.lo overlap_point.lo moprint.lo sphmultipole.lo pseudospin/stevensop.lo pseudospin/pseudospin.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_prop.a multipole.o hyperfine.o momentum.o momentum_london.o momentum_point.o current.o overlap_point.o moprint.o sphmultipole.o pseudospin/stevensop.o pseudospin/pseudospin.o libtool: link: ranlib .libs/libbagel_prop.a libtool: link: ( cd ".libs" && rm -f "libbagel_prop.la" && ln -s "../libbagel_prop.la" "libbagel_prop.la" ) make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making all in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making all in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 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determinants_base.cc -o determinants_base.o /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel_ciutil.la cistring.lo cistringset.lo determinants_base.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: ar cr .libs/libbagel_ciutil.a cistring.o cistringset.o determinants_base.o libtool: link: ranlib .libs/libbagel_ciutil.a libtool: link: ( cd ".libs" && rm -f "libbagel_ciutil.la" && ln -s "../libbagel_ciutil.la" "libbagel_ciutil.la" ) make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making all in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I../../.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o fci_base.lo fci_base.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. 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'/build/bagel-1.2.2/src/basis' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o main.o main.cc /bin/sh ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o run_bagel.lo run_bagel.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c run_bagel.cc -o run_bagel.o /bin/sh ../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o static.lo static.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c static.cc -o static.o /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o libbagel.la -rpath /usr/lib/bagel run_bagel.lo static.lo opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: (cd .libs/libbagel.lax/libbagel_opt.a && ar x "/build/bagel-1.2.2/src/opt/.libs/libbagel_opt.a") libtool: link: (cd .libs/libbagel.lax/libbagel_zcasscf.a && ar x "/build/bagel-1.2.2/src/multi/zcasscf/.libs/libbagel_zcasscf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_zfci.a && ar x "/build/bagel-1.2.2/src/ci/zfci/.libs/libbagel_zfci.a") libtool: link: (cd .libs/libbagel.lax/libbagel_fci.a && ar x "/build/bagel-1.2.2/src/ci/fci/.libs/libbagel_fci.a") libtool: link: (cd .libs/libbagel.lax/libbagel_ras.a && ar x "/build/bagel-1.2.2/src/ci/ras/.libs/libbagel_ras.a") libtool: link: (cd .libs/libbagel.lax/libbagel_response.a && ar x "/build/bagel-1.2.2/src/response/.libs/libbagel_response.a") libtool: link: (cd .libs/libbagel.lax/libbagel_scf.a && ar x "/build/bagel-1.2.2/src/scf/.libs/libbagel_scf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_casscf.a && ar x "/build/bagel-1.2.2/src/multi/casscf/.libs/libbagel_casscf.a") libtool: link: (cd .libs/libbagel.lax/libbagel_pt2.a && ar x "/build/bagel-1.2.2/src/pt2/.libs/libbagel_pt2.a") libtool: link: (cd .libs/libbagel.lax/libbagel_grad.a && ar x "/build/bagel-1.2.2/src/grad/.libs/libbagel_grad.a") libtool: link: (cd .libs/libbagel.lax/libbagel_wfn.a && ar x "/build/bagel-1.2.2/src/wfn/.libs/libbagel_wfn.a") libtool: link: (cd .libs/libbagel.lax/libbagel_df.a && ar x "/build/bagel-1.2.2/src/df/.libs/libbagel_df.a") libtool: link: (cd .libs/libbagel.lax/libbagel_smith.a && ar x "/build/bagel-1.2.2/src/smith/.libs/libbagel_smith.a") libtool: link: (cd .libs/libbagel.lax/libbagel_prop.a && ar x "/build/bagel-1.2.2/src/prop/.libs/libbagel_prop.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd.a && ar x "/build/bagel-1.2.2/src/asd/.libs/libbagel_asd.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd_dmrg.a && ar x "/build/bagel-1.2.2/src/asd/dmrg/.libs/libbagel_asd_dmrg.a") libtool: link: (cd .libs/libbagel.lax/libbagel_asd_orbital.a && ar x "/build/bagel-1.2.2/src/asd/orbital/.libs/libbagel_asd_orbital.a") libtool: link: (cd .libs/libbagel.lax/libbagel_dimer.a && ar x "/build/bagel-1.2.2/src/asd/dimer/.libs/libbagel_dimer.a") libtool: link: (cd .libs/libbagel.lax/libbagel_multisite.a && ar x "/build/bagel-1.2.2/src/asd/multisite/.libs/libbagel_multisite.a") libtool: link: (cd .libs/libbagel.lax/libbagel_ciutil.a && ar x "/build/bagel-1.2.2/src/ci/ciutil/.libs/libbagel_ciutil.a") libtool: link: (cd .libs/libbagel.lax/libbagel_mat1e.a && ar x "/build/bagel-1.2.2/src/mat1e/.libs/libbagel_mat1e.a") libtool: link: (cd .libs/libbagel.lax/libbagel_integral.a && ar x "/build/bagel-1.2.2/src/integral/.libs/libbagel_integral.a") libtool: link: (cd .libs/libbagel.lax/libbagel_molecule.a && ar x "/build/bagel-1.2.2/src/molecule/.libs/libbagel_molecule.a") libtool: link: (cd .libs/libbagel.lax/libbagel_io.a && ar x "/build/bagel-1.2.2/src/util/io/.libs/libbagel_io.a") libtool: link: (cd .libs/libbagel.lax/libbagel_util.a && ar x "/build/bagel-1.2.2/src/util/.libs/libbagel_util.a") libtool: link: (cd .libs/libbagel.lax/libbagel_parallel.a && ar x "/build/bagel-1.2.2/src/util/parallel/.libs/libbagel_parallel.a") libtool: link: (cd .libs/libbagel.lax/libbagel_math.a && ar x "/build/bagel-1.2.2/src/util/math/.libs/libbagel_math.a") libtool: link: (cd .libs/libbagel.lax/libbagel_input.a && ar x "/build/bagel-1.2.2/src/util/input/.libs/libbagel_input.a") copying selected object files to avoid basename conflicts... libtool: link: ln .libs/libbagel.lax/libbagel_ras.a/determinants.o .libs/libbagel.lax/lt1-determinants.o || cp .libs/libbagel.lax/libbagel_ras.a/determinants.o .libs/libbagel.lax/lt1-determinants.o libtool: link: ln .libs/libbagel.lax/libbagel_asd_dmrg.a/form_sigma.o .libs/libbagel.lax/lt2-form_sigma.o || cp .libs/libbagel.lax/libbagel_asd_dmrg.a/form_sigma.o .libs/libbagel.lax/lt2-form_sigma.o libtool: link: ar cr .libs/libbagel.a run_bagel.o static.o .libs/libbagel.lax/libbagel_opt.a/compute_mep.o .libs/libbagel.lax/libbagel_opt.a/compute_opt.o .libs/libbagel.lax/libbagel_opt.a/constraint.o .libs/libbagel.lax/libbagel_opt.a/get_grad.o .libs/libbagel.lax/libbagel_opt.a/opt.o .libs/libbagel.lax/libbagel_opt.a/optimize.o .libs/libbagel.lax/libbagel_opt.a/qmmm.o .libs/libbagel.lax/libbagel_opt.a/update.o .libs/libbagel.lax/libbagel_zcasscf.a/zcasnoopt.o .libs/libbagel.lax/libbagel_zcasscf.a/zcasscf.o .libs/libbagel.lax/libbagel_zcasscf.a/zcassecond.o .libs/libbagel.lax/libbagel_zcasscf.a/zcassecond_compute.o .libs/libbagel.lax/libbagel_zcasscf.a/zqvec.o .libs/libbagel.lax/libbagel_zfci.a/fci_london.o .libs/libbagel.lax/libbagel_zfci.a/jop_london.o .libs/libbagel.lax/libbagel_zfci.a/reldvec.o .libs/libbagel.lax/libbagel_zfci.a/relfci.o .libs/libbagel.lax/libbagel_zfci.a/reljop.o .libs/libbagel.lax/libbagel_zfci.a/relspace.o .libs/libbagel.lax/libbagel_zfci.a/zharrison.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_compute.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_denom.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_io.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_parallel.o .libs/libbagel.lax/libbagel_zfci.a/zharrison_rdm.o .libs/libbagel.lax/libbagel_zfci.a/zmofile.o .libs/libbagel.lax/libbagel_fci.a/civec.o .libs/libbagel.lax/libbagel_fci.a/determinants.o .libs/libbagel.lax/libbagel_fci.a/dist_form_sigma.o .libs/libbagel.lax/libbagel_fci.a/distcivec.o .libs/libbagel.lax/libbagel_fci.a/distfci.o .libs/libbagel.lax/libbagel_fci.a/distfci_rdm.o .libs/libbagel.lax/libbagel_fci.a/dvec.o .libs/libbagel.lax/libbagel_fci.a/fci.o .libs/libbagel.lax/libbagel_fci.a/fci_base.o .libs/libbagel.lax/libbagel_fci.a/fci_io.o .libs/libbagel.lax/libbagel_fci.a/fci_rdm.o .libs/libbagel.lax/libbagel_fci.a/fci_rdm_alpha.o .libs/libbagel.lax/libbagel_fci.a/fci_rdmderiv.o .libs/libbagel.lax/libbagel_fci.a/harrison_compute.o .libs/libbagel.lax/libbagel_fci.a/harrison_denom.o .libs/libbagel.lax/libbagel_fci.a/knowles_compute.o .libs/libbagel.lax/libbagel_fci.a/knowles_denom.o .libs/libbagel.lax/libbagel_fci.a/modelci.o .libs/libbagel.lax/libbagel_fci.a/mofile.o .libs/libbagel.lax/libbagel_fci.a/space.o .libs/libbagel.lax/libbagel_ras.a/apply_operator.o .libs/libbagel.lax/libbagel_ras.a/civec_spinop.o .libs/libbagel.lax/libbagel_ras.a/civector.o .libs/libbagel.lax/libbagel_ras.a/civector_impl.o .libs/libbagel.lax/lt1-determinants.o .libs/libbagel.lax/libbagel_ras.a/form_sigma.o .libs/libbagel.lax/libbagel_ras.a/rasci.o .libs/libbagel.lax/libbagel_ras.a/rasci_denom.o .libs/libbagel.lax/libbagel_ras.a/sparse_ij.o .libs/libbagel.lax/libbagel_response.a/cis.o .libs/libbagel.lax/libbagel_scf.a/atomicdensities.o .libs/libbagel.lax/libbagel_scf.a/box.o .libs/libbagel.lax/libbagel_scf.a/dfock.o .libs/libbagel.lax/libbagel_scf.a/dftgrid.o .libs/libbagel.lax/libbagel_scf.a/dirac.o .libs/libbagel.lax/libbagel_scf.a/diracgrad.o .libs/libbagel.lax/libbagel_scf.a/fmm.o 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.libs/libbagel.lax/libbagel_wfn.a/zreference.o .libs/libbagel.lax/libbagel_df.a/breit2index.o .libs/libbagel.lax/libbagel_df.a/complexdf.o .libs/libbagel.lax/libbagel_df.a/complexdf_base.o .libs/libbagel.lax/libbagel_df.a/df.o .libs/libbagel.lax/libbagel_df.a/dfblock.o .libs/libbagel.lax/libbagel_df.a/dfdistt.o .libs/libbagel.lax/libbagel_df.a/paralleldf.o .libs/libbagel.lax/libbagel_df.a/relcdmatrix.o .libs/libbagel.lax/libbagel_df.a/reldf.o .libs/libbagel.lax/libbagel_df.a/reldffull.o .libs/libbagel.lax/libbagel_df.a/reldffullt.o .libs/libbagel.lax/libbagel_df.a/reldfhalf.o .libs/libbagel.lax/libbagel_smith.a/CASA.o .libs/libbagel.lax/libbagel_smith.a/CASA_gamma.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen1.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen2.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen3.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen4.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen5.o .libs/libbagel.lax/libbagel_smith.a/CASA_gen6.o 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.libs/libbagel.lax/libbagel_math.a/distmatrix.o .libs/libbagel.lax/libbagel_math.a/distmatrix_base.o .libs/libbagel.lax/libbagel_math.a/distzmatrix.o .libs/libbagel.lax/libbagel_math.a/jacobi.o .libs/libbagel.lax/libbagel_math.a/lt1-transpose.o .libs/libbagel.lax/libbagel_math.a/matrix.o .libs/libbagel.lax/libbagel_math.a/matrix_base.o .libs/libbagel.lax/libbagel_math.a/matview.o .libs/libbagel.lax/libbagel_math.a/preallocarray.o .libs/libbagel.lax/libbagel_math.a/quatern.o .libs/libbagel.lax/libbagel_math.a/sparsematrix.o .libs/libbagel.lax/libbagel_math.a/sphharmonics.o .libs/libbagel.lax/libbagel_math.a/transpose.o .libs/libbagel.lax/libbagel_math.a/unblocked.o .libs/libbagel.lax/libbagel_math.a/xyzfile.o .libs/libbagel.lax/libbagel_math.a/zmatrix.o .libs/libbagel.lax/libbagel_math.a/zquatev.o .libs/libbagel.lax/libbagel_math.a/ztranspose.o .libs/libbagel.lax/libbagel_input.a/libbagel_input_la-input.o libtool: link: ranlib .libs/libbagel.a libtool: link: rm -fr .libs/libbagel.lax .libs/libbagel.lax libtool: link: ( cd ".libs" && rm -f "libbagel.la" && ln -s "../libbagel.la" "libbagel.la" ) /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o BAGEL main.o libbagel.la opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -Wl,-z -Wl,relro -o BAGEL main.o -L/usr/lib/aarch64-linux-gnu ./.libs/libbagel.a opt/.libs/libbagel_opt.a multi/zcasscf/.libs/libbagel_zcasscf.a ci/zfci/.libs/libbagel_zfci.a ci/fci/.libs/libbagel_fci.a ci/ras/.libs/libbagel_ras.a response/.libs/libbagel_response.a scf/.libs/libbagel_scf.a multi/casscf/.libs/libbagel_casscf.a pt2/.libs/libbagel_pt2.a grad/.libs/libbagel_grad.a wfn/.libs/libbagel_wfn.a df/.libs/libbagel_df.a smith/.libs/libbagel_smith.a prop/.libs/libbagel_prop.a asd/.libs/libbagel_asd.a asd/dmrg/.libs/libbagel_asd_dmrg.a asd/orbital/.libs/libbagel_asd_orbital.a asd/dimer/.libs/libbagel_dimer.a asd/multisite/.libs/libbagel_multisite.a ci/ciutil/.libs/libbagel_ciutil.a mat1e/.libs/libbagel_mat1e.a integral/.libs/libbagel_integral.a molecule/.libs/libbagel_molecule.a util/io/.libs/libbagel_io.a util/.libs/libbagel_util.a util/parallel/.libs/libbagel_parallel.a util/math/.libs/libbagel_math.a util/input/.libs/libbagel_input.a -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' make[1]: Leaving directory '/build/bagel-1.2.2' debian/rules override_dh_auto_test make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_test make -j1 check VERBOSE=1 make[2]: Entering directory '/build/bagel-1.2.2' Making check in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making check in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making check in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making check in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/io' Making check in input make[5]: Entering directory '/build/bagel-1.2.2/src/util/input' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/input' Making check in math make[5]: Entering directory '/build/bagel-1.2.2/src/util/math' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Entering directory '/build/bagel-1.2.2/src/util' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/util' make[4]: Leaving directory '/build/bagel-1.2.2/src/util' Making check in molecule make[4]: Entering directory '/build/bagel-1.2.2/src/molecule' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/molecule' Making check in integral make[4]: Entering directory '/build/bagel-1.2.2/src/integral' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/integral' Making check in df make[4]: Entering directory '/build/bagel-1.2.2/src/df' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/df' Making check in opt make[4]: Entering directory '/build/bagel-1.2.2/src/opt' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/opt' Making check in grad make[4]: Entering directory '/build/bagel-1.2.2/src/grad' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/grad' Making check in pt2 make[4]: Entering directory '/build/bagel-1.2.2/src/pt2' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/pt2' Making check in wfn make[4]: Entering directory '/build/bagel-1.2.2/src/wfn' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/wfn' Making check in scf make[4]: Entering directory '/build/bagel-1.2.2/src/scf' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/scf' Making check in multi make[4]: Entering directory '/build/bagel-1.2.2/src/multi' Making check in casscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' Making check in zcasscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Entering directory '/build/bagel-1.2.2/src/multi' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/multi' make[4]: Leaving directory '/build/bagel-1.2.2/src/multi' Making check in smith make[4]: Entering directory '/build/bagel-1.2.2/src/smith' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making check in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making check in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making check in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making check in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' Making check in ras make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' Making check in zfci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Entering directory '/build/bagel-1.2.2/src/ci' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/ci' make[4]: Leaving directory '/build/bagel-1.2.2/src/ci' Making check in response make[4]: Entering directory '/build/bagel-1.2.2/src/response' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/response' Making check in asd make[4]: Entering directory '/build/bagel-1.2.2/src/asd' Making check in dmrg make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' Making check in dimer make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' Making check in multisite make[5]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' Making check in orbital make[5]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Entering directory '/build/bagel-1.2.2/src/asd' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/asd' make[4]: Leaving directory '/build/bagel-1.2.2/src/asd' Making check in mat1e make[4]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/mat1e' Making check in basis make[4]: Entering directory '/build/bagel-1.2.2/src/basis' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' make TestSuite make[5]: Entering directory '/build/bagel-1.2.2/src' mpicxx -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -c -o test_main.o test_main.cc /bin/sh ../libtool --tag=CXX --mode=link mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -L/usr/lib/aarch64-linux-gnu -Wl,-z,relro -o TestSuite test_main.o libbagel.la opt/libbagel_opt.la multi/zcasscf/libbagel_zcasscf.la ci/zfci/libbagel_zfci.la ci/fci/libbagel_fci.la ci/ras/libbagel_ras.la response/libbagel_response.la scf/libbagel_scf.la multi/casscf/libbagel_casscf.la pt2/libbagel_pt2.la grad/libbagel_grad.la wfn/libbagel_wfn.la df/libbagel_df.la smith/libbagel_smith.la prop/libbagel_prop.la asd/libbagel_asd.la asd/dmrg/libbagel_asd_dmrg.la asd/orbital/libbagel_asd_orbital.la asd/dimer/libbagel_dimer.la asd/multisite/libbagel_multisite.la ci/ciutil/libbagel_ciutil.la mat1e/libbagel_mat1e.la integral/libbagel_integral.la molecule/libbagel_molecule.la util/io/libbagel_io.la util/libbagel_util.la util/parallel/libbagel_parallel.la util/math/libbagel_math.la util/input/libbagel_input.la -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread libtool: link: mpicxx -I.. -g1 -O2 -DNDEBUG -DZDOT_RETURN -Wl,-z -Wl,relro -o TestSuite test_main.o -L/usr/lib/aarch64-linux-gnu ./.libs/libbagel.a opt/.libs/libbagel_opt.a multi/zcasscf/.libs/libbagel_zcasscf.a ci/zfci/.libs/libbagel_zfci.a ci/fci/.libs/libbagel_fci.a ci/ras/.libs/libbagel_ras.a response/.libs/libbagel_response.a scf/.libs/libbagel_scf.a multi/casscf/.libs/libbagel_casscf.a pt2/.libs/libbagel_pt2.a grad/.libs/libbagel_grad.a wfn/.libs/libbagel_wfn.a df/.libs/libbagel_df.a smith/.libs/libbagel_smith.a prop/.libs/libbagel_prop.a asd/.libs/libbagel_asd.a asd/dmrg/.libs/libbagel_asd_dmrg.a asd/orbital/.libs/libbagel_asd_orbital.a asd/dimer/.libs/libbagel_dimer.a asd/multisite/.libs/libbagel_multisite.a ci/ciutil/.libs/libbagel_ciutil.a mat1e/.libs/libbagel_mat1e.a integral/.libs/libbagel_integral.a molecule/.libs/libbagel_molecule.a util/io/.libs/libbagel_io.a util/.libs/libbagel_util.a util/parallel/.libs/libbagel_parallel.a util/math/.libs/libbagel_math.a util/input/.libs/libbagel_input.a -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lblas -llapack -lpthread make[5]: Leaving directory '/build/bagel-1.2.2/src' make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' mkdir -p /build/bagel-1.2.2/src/testsuite (cd /build/bagel-1.2.2/src/testsuite; ../TestSuite --log_level=all) i-capture-the-hostname Running 31 test cases... Entering test module "Suites" ../src/testimpl/test_scf.cc(84): Entering test suite "TEST_SCF" ../src/testimpl/test_scf.cc(86): Entering test case "DF_HF" ../src/testimpl/test_scf.cc(87): info: check compare(scf_energy("hf_svp_hf"), -99.84779026) has passed ../src/testimpl/test_scf.cc(88): info: check compare(scf_energy("hf_svp_dfhf"), -99.84772354) has passed ../src/testimpl/test_scf.cc(90): info: check compare(scf_energy("hf_svp_dfhf_restart"),-99.84772354) has passed ../src/testimpl/test_scf.cc(92): info: check compare(scf_energy("hf_svp_dfhf_ext"), -99.83765614) has passed ../src/testimpl/test_scf.cc(93): info: check compare(scf_energy("hf_svp_dfhf_cart"), -99.84911270) has passed ../src/testimpl/test_scf.cc(94): info: check compare(scf_energy("hf_svp_dfhf_charge"), -99.78567137) has passed ../src/testimpl/test_scf.cc(95): info: check compare(scf_energy("hf_svp_dfhf_dkh"), -99.92869677) has passed ../src/testimpl/test_scf.cc(96): info: check compare(scf_energy("hf_mix_dfhf"), -99.83889193) has passed ../src/testimpl/test_scf.cc(97): info: check compare(scf_energy("hf_mix2_dfhf"), -99.83889193) has passed ../src/testimpl/test_scf.cc(98): info: check compare(scf_energy("oh_svp_uhf"), -75.28410147) has passed ../src/testimpl/test_scf.cc(99): info: check compare(scf_energy("hc_svp_rohf"), -38.16810629) has passed ../src/testimpl/test_scf.cc(100): info: check compare(scf_energy("hf_new_dfhf"), -99.97989929) has passed ../src/testimpl/test_scf.cc(101): info: check compare(scf_energy("hcl_svp_dfhf"), -459.93784632) has passed ../src/testimpl/test_scf.cc(102): info: check compare(scf_energy("cuh2_ecp_hf"), -196.12254012) has passed ../src/testimpl/test_scf.cc(103): info: check compare(scf_energy("hbr_ecp_sohf"), -13.68431370) has passed ../src/testimpl/test_scf.cc(104): info: check compare(scf_energy("h2o_svp_fmm"), -151.91459783) has passed ../src/testimpl/test_scf.cc(106): info: check compare(scf_energy("h2o_svp_fmm_restart"),-151.91459783) has passed ../src/testimpl/test_scf.cc(86): Leaving test case "DF_HF"; testing time: 19521879us ../src/testimpl/test_scf.cc(84): Leaving test suite "TEST_SCF"; testing time: 19521938us ../src/testimpl/test_molden.cc(98): Entering test suite "TEST_MOLDEN" ../src/testimpl/test_molden.cc(100): Entering test case "MOLDEN" ../src/testimpl/test_molden.cc(101): info: check compare(molden_out_energy("hf_write_mol_sph", "hf_read_mol_sph"), -99.84772354 ) has passed ../src/testimpl/test_molden.cc(102): info: check compare(molden_out_energy("hf_write_mol_cart", "hf_read_mol_cart"), -99.84911270 ) has passed ../src/testimpl/test_molden.cc(100): Leaving test case "MOLDEN"; testing time: 1251239us ../src/testimpl/test_molden.cc(98): Leaving test suite "TEST_MOLDEN"; testing time: 1251306us ../src/testimpl/test_prop.cc(67): Entering test suite "TEST_PROP" ../src/testimpl/test_prop.cc(69): Entering test case "MULTIPOLE" ../src/testimpl/test_prop.cc(70): info: check compare>(multipole("hf_svp_dfhf"), hf_svp_dfhf_multipole_ref(), 1.0e-6) has passed ../src/testimpl/test_prop.cc(69): Leaving test case "MULTIPOLE"; testing time: 658574us ../src/testimpl/test_prop.cc(67): Leaving test suite "TEST_PROP"; testing time: 658641us ../src/testimpl/test_ks.cc(61): Entering test suite "TEST_KS" ../src/testimpl/test_ks.cc(63): Entering test case "DF_KS" ../src/testimpl/test_ks.cc(64): info: check compare(ks_energy("hf_svp_b3lyp"), -100.28959774) has passed ../src/testimpl/test_ks.cc(63): Leaving test case "DF_KS"; testing time: 2868540us ../src/testimpl/test_ks.cc(61): Leaving test suite "TEST_KS"; testing time: 2868600us ../src/testimpl/test_rel.cc(66): Entering test suite "TEST_REL" ../src/testimpl/test_rel.cc(68): Entering test case "DIRAC_FOCK" ../src/testimpl/test_rel.cc(69): info: check compare(rel_energy("hf_svp_coulomb"), -99.93791152) has passed ../src/testimpl/test_rel.cc(70): info: check compare(rel_energy("hf_svp_gaunt"), -99.92699858) has passed ../src/testimpl/test_rel.cc(71): info: check compare(rel_energy("hf_svp_breit"), -99.92755305) has passed ../src/testimpl/test_rel.cc(68): Leaving test case "DIRAC_FOCK"; testing time: 40411668us ../src/testimpl/test_rel.cc(66): Leaving test suite "TEST_REL"; testing time: 40411734us ../src/testimpl/test_mp2.cc(58): Entering test suite "TEST_MP2" ../src/testimpl/test_mp2.cc(60): Entering test case "MP2" ../src/testimpl/test_mp2.cc(61): info: check compare(mp2_energy("benzene_svp_mp2"), -231.31440958) has passed ../src/testimpl/test_mp2.cc(62): info: check compare(mp2_energy("benzene_svp_mp2_aux"), -231.31450878) has passed ../src/testimpl/test_mp2.cc(60): Leaving test case "MP2"; testing time: 87201180us ../src/testimpl/test_mp2.cc(58): Leaving test suite "TEST_MP2"; testing time: 87201242us ../src/testimpl/test_casscf.cc(62): Entering test suite "TEST_CASSCF" ../src/testimpl/test_casscf.cc(64): Entering test case "DF_CASSCF" ../src/testimpl/test_casscf.cc(65): info: check compare(cas_energy("h2o_svp_cas"), -76.00368392) has passed ../src/testimpl/test_casscf.cc(66): info: check compare(cas_energy("lif_svp_cas22"), -106.70563743) has passed ../src/testimpl/test_casscf.cc(67): info: check compare(cas_energy("li2_tzvpp_cas43"), -14.87300366) has passed ../src/testimpl/test_casscf.cc(68): info: check compare(cas_energy("lih_tzvpp_cas22"), -7.98191070) has passed ../src/testimpl/test_casscf.cc(64): Leaving test case "DF_CASSCF"; testing time: 12228125us ../src/testimpl/test_casscf.cc(62): Leaving test suite "TEST_CASSCF"; testing time: 12228199us ../src/testimpl/test_fci.cc(103): Entering test suite "TEST_FCI" ../src/testimpl/test_fci.cc(105): Entering test case "KNOWLES_HANDY" ../src/testimpl/test_fci.cc(106): info: check compare(fci_energy("hf_sto3g_fci_kh"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(110): info: check compare(fci_energy("hhe_svp_fci_kh_trip"), reference_fci_energy2()) has passed ../src/testimpl/test_fci.cc(105): Leaving test case "KNOWLES_HANDY"; testing time: 1650850us ../src/testimpl/test_fci.cc(113): Entering test case "HARRISON_ZARRABIAN" ../src/testimpl/test_fci.cc(114): info: check compare(fci_energy("hf_sto3g_fci_hz"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(115): info: check compare(fci_energy("hhe_svp_fci_hz_trip"), reference_fci_energy2()) has passed ../src/testimpl/test_fci.cc(113): Leaving test case "HARRISON_ZARRABIAN"; testing time: 2227484us ../src/testimpl/test_fci.cc(119): Entering test case "DIST_FCI" ../src/testimpl/test_fci.cc(120): info: check compare(fci_energy("hf_sto3g_fci_dist"), reference_fci_energy()) has passed ../src/testimpl/test_fci.cc(119): Leaving test case "DIST_FCI"; testing time: 863568us ../src/testimpl/test_fci.cc(103): Leaving test suite "TEST_FCI"; testing time: 4742095us ../src/testimpl/test_zfci.cc(105): Entering test suite "TEST_RELFCI" ../src/testimpl/test_zfci.cc(107): Entering test case "ZHARRISON" ../src/testimpl/test_zfci.cc(108): info: check compare(relfci_energy("hf_sto3g_relfci_coulomb"), reference_relfci_energy()) has passed ../src/testimpl/test_zfci.cc(109): info: check compare(relfci_energy("hf_sto3g_relfci_gaunt"), reference_relfci_energy2()) has passed ../src/testimpl/test_zfci.cc(110): info: check compare(relfci_energy("hf_sto3g_relfci_breit"), reference_relfci_energy3()) has passed ../src/testimpl/test_zfci.cc(107): Leaving test case "ZHARRISON"; testing time: 69003750us ../src/testimpl/test_zfci.cc(105): Leaving test suite "TEST_RELFCI"; testing time: 69003813us ../src/testimpl/test_zcasscf.cc(98): Entering test suite "TEST_RELCAS" ../src/testimpl/test_zcasscf.cc(100): Entering test case "ZCASSCF" Test case TEST_RELCAS/ZCASSCF did not check any assertions ../src/testimpl/test_zcasscf.cc(100): Leaving test case "ZCASSCF"; testing time: 839us ../src/testimpl/test_zcasscf.cc(98): Leaving test suite "TEST_RELCAS"; testing time: 939us ../src/testimpl/test_ras.cc(92): Entering test suite "TEST_RAS" ../src/testimpl/test_ras.cc(94): Entering test case "FCI_EQUIVALENT" ../src/testimpl/test_ras.cc(95): info: check compare(ras_energy("h2o_sto3g_ras_full"), reference_ras_energy_h2o_full()) has passed ../src/testimpl/test_ras.cc(96): info: check compare(ras_energy("hhe_svp_ras_full"), reference_ras_energy_hhe_full()) has passed ../src/testimpl/test_ras.cc(94): Leaving test case "FCI_EQUIVALENT"; testing time: 1777466us ../src/testimpl/test_ras.cc(99): Entering test case "RESTRICTED" ../src/testimpl/test_ras.cc(100): info: check compare(ras_energy("h2o_sto3g_ras_restricted"), reference_ras_energy_h2o_restricted()) has passed ../src/testimpl/test_ras.cc(101): info: check compare(ras_energy("hhe_svp_ras_restricted"), reference_ras_energy_hhe_restricted()) has passed ../src/testimpl/test_ras.cc(99): Leaving test case "RESTRICTED"; testing time: 1523642us ../src/testimpl/test_ras.cc(92): Leaving test suite "TEST_RAS"; testing time: 3301248us ../src/testimpl/test_nevpt2.cc(58): Entering test suite "TEST_NEVPT2" ../src/testimpl/test_nevpt2.cc(60): Entering test case "NEVPT2" ../src/testimpl/test_nevpt2.cc(61): info: check compare(nevpt2_energy("h2o_svp_nevpt2"), -76.0205249495) has passed ../src/testimpl/test_nevpt2.cc(60): Leaving test case "NEVPT2"; testing time: 3557191us ../src/testimpl/test_nevpt2.cc(58): Leaving test suite "TEST_NEVPT2"; testing time: 3557257us ../src/testimpl/test_force.cc(102): Entering test suite "TEST_FORCE" ../src/testimpl/test_force.cc(104): Entering test case "Deriv_Coup" ../src/testimpl/test_force.cc(105): info: check compare(run_force("lif_svp_cas_nacme"), reference_cas_nacme(), 1.0e-5) has passed ../src/testimpl/test_force.cc(107): info: check compare(run_force("lif_svp_xmscaspt2_nacme"), reference_xms_nacme(), 1.0e-5) has passed ../src/testimpl/test_force.cc(104): Leaving test case "Deriv_Coup"; testing time: 8068133us ../src/testimpl/test_force.cc(111): Entering test case "Finite_Grad" ../src/testimpl/test_force.cc(112): info: check compare(run_force("hf_mix_dfhf_finite"), reference_scf_finite_mix(), 1.0e-5) has passed ../src/testimpl/test_force.cc(113): info: check compare(run_force("hf_svp_mp2_aux_finite"), reference_svp_mp2_aux_finite(), 1.0e-5) has passed ../src/testimpl/test_force.cc(115): info: check compare(run_force("lif_svp_xmscaspt2_finite"), reference_xms_finite(), 1.0e-5) has passed ../src/testimpl/test_force.cc(111): Leaving test case "Finite_Grad"; testing time: 26451518us ../src/testimpl/test_force.cc(119): Entering test case "Hcore_Grad" ../src/testimpl/test_force.cc(120): info: check compare(run_force("hf_svp_dfhf_dkh_grad"), reference_dkh_grad(), 1.0e-5) has passed ../src/testimpl/test_force.cc(119): Leaving test case "Hcore_Grad"; testing time: 372108us ../src/testimpl/test_force.cc(102): Leaving test suite "TEST_FORCE"; testing time: 34891981us ../src/testimpl/test_opt.cc(146): Entering test suite "TEST_OPT" ../src/testimpl/test_opt.cc(148): Entering test case "DF_HF_Opt" ../src/testimpl/test_opt.cc(149): info: check compare(run_opt("hf_svp_dfhf_opt"), reference_scf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(150): info: check compare(run_opt("hf_svp_dfhf_opt_cart"), reference_scf_opt_cart(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(151): info: check compare(run_opt("hf_mix_dfhf_opt"), reference_scf_opt_mix(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(152): info: check compare(run_opt("oh_svp_uhf_opt"), reference_uhf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(153): info: check compare(run_opt("hc_svp_rohf_opt"), reference_rohf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(154): info: check compare(run_opt("hcl_svp_dfhf_opt"), reference_hcl_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(155): info: check compare(run_opt("hf_svp_coulomb_opt"), reference_dcf_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(148): Leaving test case "DF_HF_Opt"; testing time: 30784305us ../src/testimpl/test_opt.cc(158): Entering test case "DF_KS_Opt" ../src/testimpl/test_opt.cc(159): info: check compare(run_opt("hf_svp_b3lyp_opt"), reference_ks_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(158): Leaving test case "DF_KS_Opt"; testing time: 8526494us ../src/testimpl/test_opt.cc(162): Entering test case "MP2_Opt" ../src/testimpl/test_opt.cc(163): info: check compare>(run_opt("hf_svp_mp2_opt"), reference_mp2_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(164): info: check compare>(run_opt("hf_svp_mp2_aux_opt"), reference_mp2_aux_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(162): Leaving test case "MP2_Opt"; testing time: 7416531us ../src/testimpl/test_opt.cc(166): Entering test case "CASSCF_Opt" ../src/testimpl/test_opt.cc(167): info: check compare>(run_opt("hf_svp_cas_opt"), reference_cas_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(168): info: check compare>(run_opt("hf_svp_sacas_opt"), reference_sacas_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(169): info: check compare>(run_opt("ch2_sto3g_meci_opt"),reference_ch2_opt(), 1.0e-4) has passed ../src/testimpl/test_opt.cc(166): Leaving test case "CASSCF_Opt"; testing time: 32768946us ../src/testimpl/test_opt.cc(146): Leaving test suite "TEST_OPT"; testing time: 79496529us ../src/testimpl/test_localize.cc(75): Entering test suite "TEST_LOCALIZE" ../src/testimpl/test_localize.cc(77): Entering test case "PML" ../src/testimpl/test_localize.cc(78): info: check compare(localization("benzene_sto3g_pml"),0.7951349703, 0.000001) has passed ../src/testimpl/test_localize.cc(79): info: check compare(localization("watertrimer_sto3g_pml_region"),0.9999109690, 0.000001) has passed ../src/testimpl/test_localize.cc(77): Leaving test case "PML"; testing time: 2583005us ../src/testimpl/test_localize.cc(82): Entering test case "REGION" ../src/testimpl/test_localize.cc(83): info: check compare(localization("watertrimer_sto3g_rl"), 0.0) has passed ../src/testimpl/test_localize.cc(82): Leaving test case "REGION"; testing time: 815409us ../src/testimpl/test_localize.cc(75): Leaving test suite "TEST_LOCALIZE"; testing time: 3398556us ../src/testimpl/test_asd.cc(162): Entering test suite "TEST_ASD" ../src/testimpl/test_asd.cc(164): Entering test case "CAS" ../src/testimpl/test_asd.cc(165): info: check compare(asd_energy("benzene_sto3g_asd_stack"), -459.40037137, 1.0e-6) has passed ../src/testimpl/test_asd.cc(166): info: check compare(asd_energy("benzene_sto3g_asd_T"), -459.36294726, 1.0e-6) has passed ../src/testimpl/test_asd.cc(164): Leaving test case "CAS"; testing time: 52710609us ../src/testimpl/test_asd.cc(169): Entering test case "RAS" ../src/testimpl/test_asd.cc(170): info: check compare(asd_models("benzene_sto3g_asd-ras_stack"), std::vector{{ 0.000000000, 0.000047060, 0.000047060, 0.000000000, -0.001758099, 0.001599564, 0.001599564, -0.001758099 }}, 1.0e-6) has passed ../src/testimpl/test_asd.cc(169): Leaving test case "RAS"; testing time: 22734482us ../src/testimpl/test_asd.cc(162): Leaving test suite "TEST_ASD"; testing time: 75445218us ../src/testimpl/test_asd_dmrg.cc(68): Entering test suite "TEST_ASD_DMRG" ../src/testimpl/test_asd_dmrg.cc(70): Entering test case "RASD_DMRG" ../src/testimpl/test_asd_dmrg.cc(71): info: check compare(asd_dmrg_energy("he3_svp_asd-dmrg"), -8.59391356, 1.0e-8) has passed ../src/testimpl/test_asd_dmrg.cc(70): Leaving test case "RASD_DMRG"; testing time: 61856552us ../src/testimpl/test_asd_dmrg.cc(68): Leaving test suite "TEST_ASD_DMRG"; testing time: 61856616us ../src/testimpl/test_london.cc(67): Entering test suite "TEST_LONDON" ../src/testimpl/test_london.cc(69): Entering test case "LONDON" ../src/testimpl/test_london.cc(70): info: check compare(london_energy("hf_svp_london_hf"), -99.70397733) has passed ../src/testimpl/test_london.cc(71): info: check compare(london_energy("hf_svp_london_dfhf"), -99.70391005) has passed ../src/testimpl/test_london.cc(72): info: check compare(london_energy("hf_svp_common_dfhf"), -98.55057515) has passed ../src/testimpl/test_london.cc(73): info: check compare(london_energy("hf_svp_london_coulomb"), -99.82461004) has passed ../src/testimpl/test_london.cc(74): info: check compare(london_energy("hf_svp_london_gaunt"), -99.81352977) has passed ../src/testimpl/test_london.cc(75): info: check compare(london_energy("hcl_svp_london_coulomb"), -459.16442992) has passed ../src/testimpl/test_london.cc(76): info: check compare(london_energy("hcl_svp_common_coulomb"), -457.89462676) has passed ../src/testimpl/test_london.cc(77): info: check compare(london_energy("hcl_svp_common_gaunt"), -454.55922514) has passed ../src/testimpl/test_london.cc(69): Leaving test case "LONDON"; testing time: 177060938us ../src/testimpl/test_london.cc(67): Leaving test suite "TEST_LONDON"; testing time: 177061003us ../src/testimpl/test_pseudospin.cc(96): Entering test suite "TEST_PSEUDOSPIN" ../src/testimpl/test_pseudospin.cc(98): Entering test case "ZFSPLITTING" Test case TEST_PSEUDOSPIN/ZFSPLITTING did not check any assertions ../src/testimpl/test_pseudospin.cc(98): Leaving test case "ZFSPLITTING"; testing time: 779us ../src/testimpl/test_pseudospin.cc(96): Leaving test suite "TEST_PSEUDOSPIN"; testing time: 864us ../src/testimpl/test_smith.cc(59): Entering test suite "TEST_SMITH" ../src/testimpl/test_smith.cc(61): Entering test case "CASPT2_Opt" ../src/testimpl/test_smith.cc(62): info: check compare(run_force("li2_svp_caspt2_grad"), reference_noshift(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(63): info: check compare(run_force("li2_svp_caspt2_shift"), reference_shift(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(64): info: check compare(run_force("lif_svp_mscaspt2_grad"), reference_ms(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(65): info: check compare(run_force("lif_svp_xmscaspt2_grad"), reference_xms(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(66): info: check compare(run_force("lif_svp_xmscaspt2_grad_imag"), reference_xms_imag(), 1.0e-5) has passed ../src/testimpl/test_smith.cc(61): Leaving test case "CASPT2_Opt"; testing time: 37365029us ../src/testimpl/test_smith.cc(59): Leaving test suite "TEST_SMITH"; testing time: 37365088us ../src/testimpl/test_response.cc(67): Entering test suite "TEST_RESPONSE" ../src/testimpl/test_response.cc(69): Entering test case "CIS" ../src/testimpl/test_response.cc(70): info: check compare>(cis_energy("hf_svp_cis"), hf_svp_cis_ref(), 1.0e-6) has passed ../src/testimpl/test_response.cc(69): Leaving test case "CIS"; testing time: 1169748us ../src/testimpl/test_response.cc(67): Leaving test suite "TEST_RESPONSE"; testing time: 1169815us Leaving test module "Suites"; testing time: 715434110us  *** No errors detected make[1]: Leaving directory '/build/bagel-1.2.2' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --max-parallel=1 --with autoreconf dh_testroot -O--max-parallel=1 dh_prep -O--max-parallel=1 dh_installdirs -O--max-parallel=1 debian/rules override_dh_auto_install make[1]: Entering directory '/build/bagel-1.2.2' dh_auto_install --destdir=/build/bagel-1.2.2/debian/tmp make -j1 install DESTDIR=/build/bagel-1.2.2/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/bagel-1.2.2' Making install in src make[3]: Entering directory '/build/bagel-1.2.2/src' Making install in util make[4]: Entering directory '/build/bagel-1.2.2/src/util' Making install in parallel make[5]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[6]: Entering directory '/build/bagel-1.2.2/src/util/parallel' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/parallel' Making install in io make[5]: Entering directory '/build/bagel-1.2.2/src/util/io' make[6]: Entering directory '/build/bagel-1.2.2/src/util/io' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/io' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/io' Making install in input make[5]: Entering directory '/build/bagel-1.2.2/src/util/input' make[6]: Entering directory '/build/bagel-1.2.2/src/util/input' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/input' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/input' Making install in math make[5]: Entering directory '/build/bagel-1.2.2/src/util/math' make[6]: Entering directory '/build/bagel-1.2.2/src/util/math' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Leaving directory '/build/bagel-1.2.2/src/util/math' make[5]: Entering directory '/build/bagel-1.2.2/src/util' make[6]: Entering directory '/build/bagel-1.2.2/src/util' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/util' make[5]: Leaving directory '/build/bagel-1.2.2/src/util' make[4]: Leaving directory '/build/bagel-1.2.2/src/util' Making install in molecule make[4]: Entering directory '/build/bagel-1.2.2/src/molecule' make[5]: Entering directory '/build/bagel-1.2.2/src/molecule' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/molecule' make[4]: Leaving directory '/build/bagel-1.2.2/src/molecule' Making install in integral make[4]: Entering directory '/build/bagel-1.2.2/src/integral' make[5]: Entering directory '/build/bagel-1.2.2/src/integral' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/integral' make[4]: Leaving directory '/build/bagel-1.2.2/src/integral' Making install in df make[4]: Entering directory '/build/bagel-1.2.2/src/df' make[5]: Entering directory '/build/bagel-1.2.2/src/df' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/df' make[4]: Leaving directory '/build/bagel-1.2.2/src/df' Making install in opt make[4]: Entering directory '/build/bagel-1.2.2/src/opt' make[5]: Entering directory '/build/bagel-1.2.2/src/opt' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/opt' make[4]: Leaving directory '/build/bagel-1.2.2/src/opt' Making install in grad make[4]: Entering directory '/build/bagel-1.2.2/src/grad' make[5]: Entering directory '/build/bagel-1.2.2/src/grad' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/grad' make[4]: Leaving directory '/build/bagel-1.2.2/src/grad' Making install in pt2 make[4]: Entering directory '/build/bagel-1.2.2/src/pt2' make[5]: Entering directory '/build/bagel-1.2.2/src/pt2' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/pt2' make[4]: Leaving directory '/build/bagel-1.2.2/src/pt2' Making install in wfn make[4]: Entering directory '/build/bagel-1.2.2/src/wfn' make[5]: Entering directory '/build/bagel-1.2.2/src/wfn' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/wfn' make[4]: Leaving directory '/build/bagel-1.2.2/src/wfn' Making install in scf make[4]: Entering directory '/build/bagel-1.2.2/src/scf' make[5]: Entering directory '/build/bagel-1.2.2/src/scf' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/scf' make[4]: Leaving directory '/build/bagel-1.2.2/src/scf' Making install in multi make[4]: Entering directory '/build/bagel-1.2.2/src/multi' Making install in casscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[6]: Entering directory '/build/bagel-1.2.2/src/multi/casscf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/casscf' Making install in zcasscf make[5]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[6]: Entering directory '/build/bagel-1.2.2/src/multi/zcasscf' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi/zcasscf' make[5]: Entering directory '/build/bagel-1.2.2/src/multi' make[6]: Entering directory '/build/bagel-1.2.2/src/multi' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/multi' make[5]: Leaving directory '/build/bagel-1.2.2/src/multi' make[4]: Leaving directory '/build/bagel-1.2.2/src/multi' Making install in smith make[4]: Entering directory '/build/bagel-1.2.2/src/smith' make[5]: Entering directory '/build/bagel-1.2.2/src/smith' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/smith' make[4]: Leaving directory '/build/bagel-1.2.2/src/smith' Making install in prop make[4]: Entering directory '/build/bagel-1.2.2/src/prop' make[5]: Entering directory '/build/bagel-1.2.2/src/prop' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/prop' make[4]: Leaving directory '/build/bagel-1.2.2/src/prop' Making install in ci make[4]: Entering directory '/build/bagel-1.2.2/src/ci' Making install in ciutil make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/ciutil' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ciutil' Making install in fci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/fci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/fci' Making install in ras make[5]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/ras' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/ras' Making install in zfci make[5]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci/zfci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci/zfci' make[5]: Entering directory '/build/bagel-1.2.2/src/ci' make[6]: Entering directory '/build/bagel-1.2.2/src/ci' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/ci' make[5]: Leaving directory '/build/bagel-1.2.2/src/ci' make[4]: Leaving directory '/build/bagel-1.2.2/src/ci' Making install in response make[4]: Entering directory '/build/bagel-1.2.2/src/response' make[5]: Entering directory '/build/bagel-1.2.2/src/response' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/response' make[4]: Leaving directory '/build/bagel-1.2.2/src/response' Making install in asd make[4]: Entering directory '/build/bagel-1.2.2/src/asd' Making install in dmrg make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/dmrg' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dmrg' Making install in dimer make[5]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/dimer' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/dimer' Making install in multisite make[5]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/multisite' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/multisite' Making install in orbital make[5]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[6]: Entering directory '/build/bagel-1.2.2/src/asd/orbital' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd/orbital' make[5]: Entering directory '/build/bagel-1.2.2/src/asd' make[6]: Entering directory '/build/bagel-1.2.2/src/asd' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/bagel-1.2.2/src/asd' make[5]: Leaving directory '/build/bagel-1.2.2/src/asd' make[4]: Leaving directory '/build/bagel-1.2.2/src/asd' Making install in mat1e make[4]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[5]: Entering directory '/build/bagel-1.2.2/src/mat1e' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/bagel-1.2.2/src/mat1e' make[4]: Leaving directory '/build/bagel-1.2.2/src/mat1e' Making install in basis make[4]: Entering directory '/build/bagel-1.2.2/src/basis' make[5]: Entering directory '/build/bagel-1.2.2/src/basis' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' /usr/bin/install -c -m 644 3-21g.json 6-31g.json ano-rcc.json aug-cc-pv5z.json aug-cc-pv6z.json aug-cc-pvdz.json aug-cc-pvqz.json aug-cc-pvtz.json cc-pv5z-jkfit.json cc-pv5z-ri.json cc-pv5z.json cc-pv6z.json cc-pvdz-jkfit.json cc-pvdz-ri.json cc-pvdz.json cc-pvqz-jkfit.json cc-pvqz-ri.json cc-pvqz.json cc-pvtz-jkfit.json cc-pvtz-ri.json cc-pvtz.json complete.json def2-SVP-2c-ecp.json def2-SVP-ecp.json ecp10mdf.json ecp28mdf.json ecp46mdf.json ecp60mdf.json ecp78mdf.json lanl2dz-ecp.json qzvpp-jkfit.json qzvpp.json sto-3g.json svp-jkfit.json svp.json tzvpp-jkfit.json tzvpp.json aug-cc-pcv5z.json aug-cc-pcvqz.json aug-cc-pwcvdz.json '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' /usr/bin/install -c -m 644 cc-pcv5z.json cc-pvdz-dk.json d-aug-cc-pvqz.json aug-cc-pcvdz-dk.json aug-cc-pcvtz-dk.json aug-cc-pwcvqz.json cc-pcvdz.json cc-pvtz-dk.json d-aug-cc-pvtz.json aug-cc-pcvdz.json aug-cc-pcvtz.json aug-cc-pwcvtz.json cc-pcvqz.json d-aug-cc-pv5z.json aug-cc-pcvqz-dk.json aug-cc-pwcv5z.json cc-pcvtz.json d-aug-cc-pvdz.json '/build/bagel-1.2.2/debian/tmp/usr/share/bagel' make[5]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Leaving directory '/build/bagel-1.2.2/src/basis' make[4]: Entering directory '/build/bagel-1.2.2/src' make[5]: Entering directory '/build/bagel-1.2.2/src' /usr/bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/lib/bagel' /bin/sh ../libtool --mode=install /usr/bin/install -c libbagel.la '/build/bagel-1.2.2/debian/tmp/usr/lib/bagel' libtool: install: /usr/bin/install -c .libs/libbagel.lai /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.la libtool: install: /usr/bin/install -c .libs/libbagel.a /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: install: chmod 644 /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: install: ranlib /build/bagel-1.2.2/debian/tmp/usr/lib/bagel/libbagel.a libtool: warning: remember to run 'libtool --finish /usr/lib/bagel' /usr/bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/bin' /bin/sh ../libtool --mode=install /usr/bin/install -c BAGEL '/build/bagel-1.2.2/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c BAGEL /build/bagel-1.2.2/debian/tmp/usr/bin/BAGEL /usr/bin/mkdir -p '/build/bagel-1.2.2/debian/tmp/usr/include' /usr/bin/install -c -m 644 bagel.h '/build/bagel-1.2.2/debian/tmp/usr/include' make[5]: Leaving directory '/build/bagel-1.2.2/src' make[4]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Leaving directory '/build/bagel-1.2.2/src' make[3]: Entering directory '/build/bagel-1.2.2' make[4]: Entering directory '/build/bagel-1.2.2' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/bagel-1.2.2' make[3]: Leaving directory '/build/bagel-1.2.2' make[2]: Leaving directory '/build/bagel-1.2.2' (cd docs; cp -a _static _images searchindex.js /build/bagel-1.2.2/debian/bagel/usr/share/doc/bagel/html) (cd docs; cp --parents `find -name \*.html*` /build/bagel-1.2.2/debian/bagel/usr/share/doc/bagel/html) make[1]: Leaving directory '/build/bagel-1.2.2' dh_install -O--max-parallel=1 dh_installdocs -O--max-parallel=1 debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/bagel-1.2.2' dh_installchangelogs -XChangeLog make[1]: Leaving directory '/build/bagel-1.2.2' dh_installexamples -O--max-parallel=1 dh_installinit -O--max-parallel=1 dh_installsystemduser -O--max-parallel=1 dh_perl -O--max-parallel=1 dh_link -O--max-parallel=1 dh_strip_nondeterminism -O--max-parallel=1 dh_compress -O--max-parallel=1 dh_fixperms -O--max-parallel=1 dh_missing -O--max-parallel=1 dh_missing: warning: usr/include/bagel.h exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/bagel/libbagel.a exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/bagel/libbagel.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: bagel (2) * dh_installdocs: bagel (0) * dh_installexamples: bagel (93) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -O--max-parallel=1 dh_strip -O--max-parallel=1 dh_makeshlibs -O--max-parallel=1 dh_shlibdeps -O--max-parallel=1 dh_installdeb -O--max-parallel=1 dh_gencontrol -O--max-parallel=1 dh_md5sums -O--max-parallel=1 dh_builddeb -O--max-parallel=1 dpkg-deb: building package 'bagel' in '../bagel_1.2.2-2_arm64.deb'. dpkg-deb: building package 'bagel-dbgsym' in '../bagel-dbgsym_1.2.2-2_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bagel_1.2.2-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/21582/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/21582/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/21582 and its subdirectories I: Current time: Sun Aug 21 12:29:17 +14 2022 I: pbuilder-time-stamp: 1661034557