I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 22 10:54:19 +14 2022 I: pbuilder-time-stamp: 1661115259 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libccp4_6.5.1-5.dsc] I: copying [./libccp4_6.5.1.orig.tar.gz] I: copying [./libccp4_6.5.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.z5oMDQNn/trustedkeys.kbx': General error gpgv: Signature made Wed Jan 6 01:36:33 2021 +14 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libccp4_6.5.1-5.dsc dpkg-source: info: extracting libccp4 in libccp4-6.5.1 dpkg-source: info: unpacking libccp4_6.5.1.orig.tar.gz dpkg-source: info: unpacking libccp4_6.5.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-use-mmdb2-instead-of-mmdb-in-libccp4f.pc.in.patch dpkg-source: info: applying 0002-fix-ftbfs-with-gcc-10.patch dpkg-source: info: applying 0003-endianness.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19852/tmp/hooks/D01_modify_environment starting debug: Running on codethink13-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/19852/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/19852/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=19852 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.MjP7jrp62G/pbuilderrc_urCo --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.MjP7jrp62G/b2 --logfile b2/build.log --extrapackages usrmerge libccp4_6.5.1-5.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 22 2021 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Feb 8 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 8 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Feb 8 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 8 2021 more -rwsr-xr-x 1 root root 51360 Feb 8 2021 mount -rwxr-xr-x 1 root root 14496 Feb 8 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 22 10:54 sh -> bash lrwxrwxrwx 1 root root 4 Aug 22 05:49 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Feb 8 2021 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 8 2021 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 8 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/19852/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gfortran, libmmdb2-dev, m4 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libmmdb2-dev; however: Package libmmdb2-dev is not installed. pbuilder-satisfydepends-dummy depends on m4; however: Package m4 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmmdb2-0{a} libmmdb2-dev{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 27.7 MB of archives. After unpacking 99.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 gfortran arm64 4:10.2.1-1 [1424 B] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-0 arm64 2.0.5-1 [315 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libmmdb2-dev arm64 2.0.5-1 [91.9 kB] Fetched 27.7 MB in 1s (44.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../31-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libgfortran-10-dev:arm64. Preparing to unpack .../32-libgfortran-10-dev_10.2.1-6_arm64.deb ... Unpacking libgfortran-10-dev:arm64 (10.2.1-6) ... Selecting previously unselected package gfortran-10. Preparing to unpack .../33-gfortran-10_10.2.1-6_arm64.deb ... Unpacking gfortran-10 (10.2.1-6) ... Selecting previously unselected package gfortran. Preparing to unpack .../34-gfortran_4%3a10.2.1-1_arm64.deb ... Unpacking gfortran (4:10.2.1-1) ... Selecting previously unselected package libmmdb2-0:arm64. Preparing to unpack .../35-libmmdb2-0_2.0.5-1_arm64.deb ... Unpacking libmmdb2-0:arm64 (2.0.5-1) ... Selecting previously unselected package libmmdb2-dev. Preparing to unpack .../36-libmmdb2-dev_2.0.5-1_arm64.deb ... Unpacking libmmdb2-dev (2.0.5-1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmmdb2-0:arm64 (2.0.5-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libmmdb2-dev (2.0.5-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:arm64 (10.2.1-6) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gfortran-10 (10.2.1-6) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main arm64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main arm64 libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main arm64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main arm64 usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 0s (1642 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21599 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/libccp4-6.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libccp4_6.5.1-5_source.changes dpkg-buildpackage: info: source package libccp4 dpkg-buildpackage: info: source version 6.5.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: installing 'build-aux/compile' configure.ac:8: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libccp4-6.5.1' dh_auto_configure -- --disable-static --enable-shared --datadir=/usr/share/ccp4 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --disable-static --enable-shared --datadir=/usr/share/ccp4 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for ar... ar checking the archiver (ar) interface... ar checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for m4... /usr/bin/m4 configure: fortran/unix.m4 will be processed with m4 -D_gfort=1 checking for library containing cos... -lm checking for MMDB_CCIF_Init in -lmmdb2... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libccp4c.pc config.status: creating libccp4f.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_build make -j8 make[1]: Entering directory '/build/libccp4-6.5.1' m4 -D_gfort=1 fortran/unix.m4 > fortran/unix.f make all-am make[2]: Entering directory '/build/libccp4-6.5.1' /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_array.lo ccp4/ccp4_array.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_data.lo ccp4/cmap_data.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmtzlib.lo ccp4/cmtzlib.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_general.lo ccp4/ccp4_general.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_header.lo ccp4/cmap_header.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/csymlib.lo ccp4/csymlib.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_parser.lo ccp4/ccp4_parser.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_labels.lo ccp4/cmap_labels.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_data.c -fPIC -DPIC -o ccp4/.libs/cmap_data.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_array.c -fPIC -DPIC -o ccp4/.libs/ccp4_array.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_general.c -fPIC -DPIC -o ccp4/.libs/ccp4_general.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_header.c -fPIC -DPIC -o ccp4/.libs/cmap_header.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmtzlib.c -fPIC -DPIC -o ccp4/.libs/cmtzlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_parser.c -fPIC -DPIC -o ccp4/.libs/ccp4_parser.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/csymlib.c -fPIC -DPIC -o ccp4/.libs/csymlib.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_labels.c -fPIC -DPIC -o ccp4/.libs/cmap_labels.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cvecmat.lo ccp4/cvecmat.c In file included from /usr/include/string.h:495, from ccp4/cmap_labels.c:19: In function 'strncpy', inlined from 'write_maplabels' at ccp4/cmap_labels.c:66:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmap_labels.c: In function 'write_maplabels': ccp4/cmap_labels.c:64:12: note: length computed here 64 | slen = strlen(mfile->labels.labels[i]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cvecmat.c -fPIC -DPIC -o ccp4/.libs/cvecmat.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_program.lo ccp4/ccp4_program.c In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', inlined from 'ccp4_parse_delimiters' at ccp4/ccp4_parser.c:315:2: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/ccp4_parser.c: In function 'ccp4_parse_delimiters': ccp4/ccp4_parser.c:307:16: note: length computed here 307 | ldelim = strlen(defdelim) + 1; | ^~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', inlined from 'ccp4_parse_delimiters' at ccp4/ccp4_parser.c:332:2: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/ccp4_parser.c: In function 'ccp4_parse_delimiters': ccp4/ccp4_parser.c:324:20: note: length computed here 324 | lnulldelim = strlen(defnulldelim) + 1; | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', inlined from 'ccp4_parse_comments' at ccp4/ccp4_parser.c:388:2: /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_open.lo ccp4/cmap_open.c /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/ccp4_parser.c: In function 'ccp4_parse_comments': ccp4/ccp4_parser.c:381:18: note: length computed here 381 | lcomment = strlen(def_comment_chars) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_program.c -fPIC -DPIC -o ccp4/.libs/ccp4_program.o In file included from /usr/include/string.h:495, from ccp4/ccp4_parser.c:90: In function 'strncpy', inlined from 'ccp4_keymatch' at ccp4/ccp4_parser.c:1086:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin___strncpy_chk' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/ccp4_parser.c: In function 'ccp4_keymatch': ccp4/ccp4_parser.c:1075:10: note: length computed here 1075 | len1 = strlen(keyin1); | ^~~~~~~~~~~~~~ /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_err.lo ccp4/library_err.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/ccp4_unitcell.lo ccp4/ccp4_unitcell.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_open.c -fPIC -DPIC -o ccp4/.libs/cmap_open.o ccp4/ccp4_program.c: In function 'ccp4_vers_no': ccp4/ccp4_program.c:68:12: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fgets(ccp4version,MAXLEN_PROGVERSION,cfile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/ccp4_unitcell.c -fPIC -DPIC -o ccp4/.libs/ccp4_unitcell.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_err.c -fPIC -DPIC -o ccp4/.libs/library_err.o ccp4/library_err.c: In function 'CFile_Perror': ccp4/library_err.c:247:26: warning: comparison between pointer and zero character constant [-Wpointer-compare] 247 | if (msg == NULL || msg == '\0') colon = ""; | ^~ ccp4/library_err.c:247:22: note: did you mean to dereference the pointer? 247 | if (msg == NULL || msg == '\0') colon = ""; | ^ /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_skew.lo ccp4/cmap_skew.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_file.lo ccp4/library_file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_skew.c -fPIC -DPIC -o ccp4/.libs/cmap_skew.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_accessor.lo ccp4/cmap_accessor.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_stats.lo ccp4/cmap_stats.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/library_utils.lo ccp4/library_utils.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_file.c -fPIC -DPIC -o ccp4/.libs/library_file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_accessor.c -fPIC -DPIC -o ccp4/.libs/cmap_accessor.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_stats.c -fPIC -DPIC -o ccp4/.libs/cmap_stats.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/library_utils.c -fPIC -DPIC -o ccp4/.libs/library_utils.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_close.lo ccp4/cmap_close.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/cmap_symop.lo ccp4/cmap_symop.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_close.c -fPIC -DPIC -o ccp4/.libs/cmap_close.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/cmap_symop.c -fPIC -DPIC -o ccp4/.libs/cmap_symop.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ccp4/pack_c.lo ccp4/pack_c.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_diskio_f.lo `test -f 'fortran/ccp4_diskio_f.c' || echo './'`fortran/ccp4_diskio_f.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_parser_f.lo `test -f 'fortran/ccp4_parser_f.c' || echo './'`fortran/ccp4_parser_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c ccp4/pack_c.c -fPIC -DPIC -o ccp4/.libs/pack_c.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmaplib_f.lo `test -f 'fortran/cmaplib_f.c' || echo './'`fortran/cmaplib_f.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-csymlib_f.lo `test -f 'fortran/csymlib_f.c' || echo './'`fortran/csymlib_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_diskio_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_diskio_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_parser_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_parser_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmaplib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmaplib_f.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/csymlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-csymlib_f.o In file included from /usr/include/string.h:495, from fortran/ccp4_diskio_f.c:59: In function 'strncpy', inlined from 'qqinq_' at fortran/ccp4_diskio_f.c:718:5: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./ccp4/ccp4_utils.h:29, from fortran/ccp4_diskio_f.c:60: fortran/ccp4_diskio_f.c: In function 'qqinq_': fortran/ccp4_diskio_f.c:719:25: note: length computed here 719 | MIN(strlen(_ioChannels[*istrm]->iobj->name), ./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_general_f.lo `test -f 'fortran/ccp4_general_f.c' || echo './'`fortran/ccp4_general_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_general_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_general_f.o /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-ccp4_unitcell_f.lo `test -f 'fortran/ccp4_unitcell_f.c' || echo './'`fortran/ccp4_unitcell_f.c In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c: In function 'ccpfyp_': fortran/ccp4_general_f.c:88:23: warning: implicit declaration of function 'outbuf_' [-Wimplicit-function-declaration] 88 | FORTRAN_CALL(OUTBUF,outbuf,(),(),()); | ^~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ fortran/ccp4_general_f.c:114:5: warning: implicit declaration of function '_gfortran_getarg_i4'; did you mean '_gfortran_getarg'? [-Wimplicit-function-declaration] 114 | _gfortran_getarg_i4(&i,arg,arg_len); | ^~~~~~~~~~~~~~~~~~~ | _gfortran_getarg In file included from fortran/ccp4_general_f.c:34: fortran/ccp4_general_f.c:145:29: warning: implicit declaration of function 'ccp4h_init_' [-Wimplicit-function-declaration] 145 | FORTRAN_CALL (CCP4H_INIT, ccp4h_init, (), (), ()); | ^~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ fortran/ccp4_general_f.c: In function 'ccperr_': fortran/ccp4_general_f.c:218:37: warning: implicit declaration of function 'ccp4_fflush_stdout_' [-Wimplicit-function-declaration] 218 | FORTRAN_CALL (CCP4_FFLUSH_STDOUT, ccp4_fflush_stdout, (), (), ()); | ^~~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ In file included from /usr/include/string.h:495, from fortran/cmaplib_f.c:46: In function 'strncpy', inlined from 'mrdhds_' at fortran/cmaplib_f.c:713:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./ccp4/ccp4_utils.h:29, from ./ccp4/cmaplib.h:58, from ./ccp4/cmaplib_f.h:22, from fortran/cmaplib_f.c:49: fortran/cmaplib_f.c: In function 'mrdhds_': fortran/cmaplib_f.c:713:32: note: length computed here 713 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); ./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ fortran/ccp4_general_f.c:222:38: warning: implicit declaration of function 'ccp4h_summary_beg_' [-Wimplicit-function-declaration] 222 | FORTRAN_CALL (CCP4H_SUMMARY_BEG, ccp4h_summary_beg, (), (), ()); | ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ fortran/ccp4_general_f.c:230:38: warning: implicit declaration of function 'ccp4h_summary_end_' [-Wimplicit-function-declaration] 230 | FORTRAN_CALL (CCP4H_SUMMARY_END, ccp4h_summary_end, (), (), ()); | ^~~~~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/ccp4_unitcell_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/ccp4_general_f.c: In function 'ccpvrs_': fortran/ccp4_general_f.c:376:32: warning: implicit declaration of function 'ccp4h_pre_beg_' [-Wimplicit-function-declaration] 376 | FORTRAN_CALL (CCP4H_PRE_BEG, ccp4h_pre_beg, (), (), ()); | ^~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ In file included from /usr/include/string.h:495, from fortran/cmaplib_f.c:46: In function 'strncpy', inlined from 'ccp4_map_read_open_header_' at fortran/cmaplib_f.c:917:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./ccp4/ccp4_utils.h:29, from ./ccp4/cmaplib.h:58, from ./ccp4/cmaplib_f.h:22, from fortran/cmaplib_f.c:49: fortran/cmaplib_f.c: In function 'ccp4_map_read_open_header_': fortran/cmaplib_f.c:917:32: note: length computed here 917 | strncpy(title,temp_title,MIN(strlen(temp_title),FTN_LEN(title))); ./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-cmtzlib_f.lo `test -f 'fortran/cmtzlib_f.c' || echo './'`fortran/cmtzlib_f.c /bin/sh ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fortran/libccp4f_la-library_f.lo `test -f 'fortran/library_f.c' || echo './'`fortran/library_f.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/cmtzlib_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-cmtzlib_f.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/ccplib.lo fortran/ccplib.f libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./ccp4 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -c fortran/library_f.c -fPIC -DPIC -o fortran/.libs/libccp4f_la-library_f.o In file included from fortran/cmtzlib_f.c:70: fortran/cmtzlib_f.c: In function 'mtzini_': fortran/cmtzlib_f.c:152:33: warning: implicit declaration of function 'ccp4h_init_lib_' [-Wimplicit-function-declaration] 152 | FORTRAN_CALL (CCP4H_INIT_LIB, ccp4h_init_lib, (&ihtml,&isumm), (&ihtml,&isumm), (&ihtml,&isumm)); | ^~~~~~~~~~~~~~ ./ccp4/ccp4_fortran.h:187:5: note: in definition of macro 'FORTRAN_CALL' 187 | name##_ p_sun | ^~~~ fortran/cmtzlib_f.c: In function 'lrhist_': fortran/cmtzlib_f.c:277:43: warning: passing argument 2 of 'ccp4_lrhist' from incompatible pointer type [-Wincompatible-pointer-types] 277 | *nlines = ccp4_lrhist(mtzdata[*mindx-1], hstrng, *nlines); | ^~~~~~ | | | fpstr {aka char *} In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:668:38: note: expected 'char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} 668 | int ccp4_lrhist(const MTZ *mtz, char history[][MTZRECORDLENGTH], int nlines); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyin_': fortran/cmtzlib_f.c:632:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 632 | if (MtzParseLabin(temp_name,label,*nlprgi,user_label_in[*mindx-1]) == -1) | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyout_': fortran/cmtzlib_f.c:686:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 686 | if (MtzParseLabin(temp_name,label,*nlprgo,user_label_out[*mindx-1]) == -1) | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lkyset_': fortran/cmtzlib_f.c:731:31: warning: passing argument 2 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 731 | if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:738:48: note: expected 'const char (*)[31]' but argument is of type 'char *' 738 | int MtzParseLabin(char *labin_line, const char prog_labels[][31], | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c:731:45: warning: passing argument 4 of 'MtzParseLabin' from incompatible pointer type [-Wincompatible-pointer-types] 731 | if (MtzParseLabin(temp_name,label,*nlprgi,user_lab) == -1) | ^~~~~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:739:28: note: expected 'char (*)[2][31]' but argument is of type 'char *' 739 | const int nlprgi, char user_labels[][2][31]); | ~~~~~^~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrassn_': fortran/cmtzlib_f.c:830:44: warning: passing argument 2 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] 830 | colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:754:49: note: expected 'const char (*)[31]' but argument is of type 'char *' 754 | MTZCOL **ccp4_lrassn(const MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:830:58: warning: passing argument 4 of 'ccp4_lrassn' from incompatible pointer type [-Wincompatible-pointer-types] 830 | colarray = ccp4_lrassn(mtzdata[*mindx-1],label,*nlprgi,type); | ^~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:755:8: note: expected 'char (*)[3]' but argument is of type 'char *' 755 | char types[][3]); | ~~~~~^~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lrreff_': fortran/cmtzlib_f.c:1210:23: warning: passing argument 5 of 'ccp4_lrreff' from incompatible pointer type [-Wincompatible-pointer-types] 1210 | collookup[mindex-1], ndatmss[mindex-1], irref[mindex-1]); | ~~~~~~~~~^~~~~~~~~~ | | | MTZCOL ** In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:808:17: note: expected 'const MTZCOL **' but argument is of type 'MTZCOL **' 808 | const MTZCOL *lookup[], const int ncols, const int iref); | ~~~~~~~~~~~~~~^~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhist_': fortran/cmtzlib_f.c:1807:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] 1807 | MtzAddHistory(mtzdata[*mindx-1], hstrng, *nlines); | ^~~~~~ | | | fpstr {aka char *} In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'fpstr' {aka 'char *'} 875 | int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwhstl_': fortran/cmtzlib_f.c:1859:35: warning: passing argument 2 of 'MtzAddHistory' from incompatible pointer type [-Wincompatible-pointer-types] 1859 | MtzAddHistory(mtzdata[*mindx-1], hline, 1); | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:875:40: note: expected 'const char (*)[80]' but argument is of type 'char *' 875 | int MtzAddHistory(MTZ *mtz, const char history[][MTZRECORDLENGTH], const int nlines); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwassn_': fortran/cmtzlib_f.c:2432:46: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2432 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:43: note: expected 'const char (*)[31]' but argument is of type 'char *' 935 | MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:2432:60: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2432 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:936:25: note: expected 'const char (*)[3]' but argument is of type 'char *' 936 | const char types[][3], const int iappnd); | ~~~~~~~~~~~^~~~~~~~~~ fortran/cmtzlib_f.c: In function 'lwclab_': fortran/cmtzlib_f.c:2510:44: warning: passing argument 2 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2510 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:935:43: note: expected 'const char (*)[31]' but argument is of type 'char *' 935 | MTZCOL **ccp4_lwassn(MTZ *mtz, const char labels[][31], const int nlabels, | ~~~~~~~~~~~^~~~~~~~~~~~ fortran/cmtzlib_f.c:2510:58: warning: passing argument 4 of 'ccp4_lwassn' from incompatible pointer type [-Wincompatible-pointer-types] 2510 | colarray = ccp4_lwassn(mtzdata[*mindx-1],label,*nlprgo,type,*iappnd); | ^~~~ | | | char * In file included from fortran/cmtzlib_f.c:72: ./ccp4/cmtzlib.h:936:25: note: expected 'const char (*)[3]' but argument is of type 'char *' 936 | const char types[][3], const int iappnd); | ~~~~~~~~~~~^~~~~~~~~~ /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/fftlib.lo fortran/fftlib.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/ccplib.f -fPIC -o fortran/.libs/ccplib.o fortran/ccplib.f:1039:72: 1039 | 10 IARR1(J)=IARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1064:72: 1064 | 10 ARR1(J)=ARR2(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/fftlib.f -fPIC -o fortran/.libs/fftlib.o fortran/ccplib.f:1834:72: 1834 | 10 ARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1856:72: 1856 | 10 IARR1(J)=0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/ccplib.f:1879:72: 1879 | 10 ARR1(J)=0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/modlib.lo fortran/modlib.f fortran/fftlib.f:1252:72: 1252 | IF (K-I) 90,130,100 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) In file included from /usr/include/string.h:495, from fortran/cmaplib_f.c:46: In function 'strncpy', inlined from 'mwfnam_' at fortran/cmaplib_f.c:2110:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./ccp4/ccp4_utils.h:29, from ./ccp4/cmaplib.h:58, from ./ccp4/cmaplib_f.h:22, from fortran/cmaplib_f.c:49: fortran/cmaplib_f.c: In function 'mwfnam_': fortran/cmaplib_f.c:2111:8: note: length computed here 2111 | MIN(strlen(ioArray[last_Write]->logname), ./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ In file included from /usr/include/string.h:495, from fortran/cmaplib_f.c:46: In function 'strncpy', inlined from 'mrfnam_' at fortran/cmaplib_f.c:2138:3: /usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./ccp4/ccp4_utils.h:29, from ./ccp4/cmaplib.h:58, from ./ccp4/cmaplib_f.h:22, from fortran/cmaplib_f.c:49: fortran/cmaplib_f.c: In function 'mrfnam_': fortran/cmaplib_f.c:2139:8: note: length computed here 2139 | MIN(strlen(ioArray[last_Read]->logname), ./ccp4/ccp4_types.h:69:22: note: in definition of macro 'MIN' 69 | #define MIN(x, y) (((x)<(y))?(x):(y)) | ^ /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/parser.lo fortran/parser.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/modlib.f -fPIC -o fortran/.libs/modlib.o fortran/modlib.f:256:72: 256 | DO 100 I = 1, P | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:258:72: 258 | DO 100 K = 1, R | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:259:72: 259 | DO 100 J = 1, Q | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) fortran/modlib.f:263:72: 263 | 100 D(I,L) = D(I,L) + A(I,J) * B(J,K) * C(K,L) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) fortran/modlib.f:749:72: 749 | IF (M-2) 30,10,20 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/rwbrook.lo fortran/rwbrook.f fortran/modlib.f:1386:18: 1383 | DO 20 J = 2,M | 2 ...... 1386 | A(I,J) = A(J,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:16: 1383 | DO 20 J = 2,M | 2 ...... 1388 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1388:25: 1383 | DO 20 J = 2,M | 2 ...... 1388 | ALPHA(J) = A(J,J) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1441:20: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:16: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) 1442 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1442:25: 1440 | DO 120 I = 2,M | 2 1441 | H = ALPHA(I) 1442 | ALPHA(I) = A(I,I) | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) fortran/modlib.f:1443:14: 1440 | DO 120 I = 2,M | 2 ...... 1443 | A(I,I) = H | 1 Warning: Array reference at (1) out of bounds (2 > 1) in loop beginning at (2) libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/parser.f -fPIC -o fortran/.libs/parser.o libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/rwbrook.f -fPIC -o fortran/.libs/rwbrook.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/libhtml.lo fortran/libhtml.f fortran/rwbrook.f:1633:72: 1633 | DO 10 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/rwbrook.f:1651:72: 1651 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/rwbrook.f:2314:72: 2314 | DO 10 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/rwbrook.f:2320:72: 2320 | DO 20 J=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/rwbrook.f:2374:72: 2374 | 1 CELLD(I) = CELL(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/rwbrook.f:2410:72: 2410 | 1 RCEL(I) = CELLAS(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/rwbrook.f:2817:72: 2817 | DO 40 J = 1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/libhtml.f -fPIC -o fortran/.libs/libhtml.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/keyparse.lo fortran/keyparse.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/keyparse.f -fPIC -o fortran/.libs/keyparse.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/dna_output.lo fortran/dna_output.f /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pack_f.lo fortran/pack_f.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/dna_output.f -fPIC -o fortran/.libs/dna_output.o ccp4/cmtzlib.c: In function 'MtzPut': ccp4/cmtzlib.c:2721:27: warning: '%74s' directive writing between 74 and 80 bytes into a region of size 76 [-Wformat-overflow=] 2721 | sprintf(hdrrec,"SYMM %74s",symline); | ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:867, from ccp4/cmtzlib.c:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 80 and 86 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2815:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ ccp4/cmtzlib.c:2815:20: note: directive argument in the range [0, 2147483647] 2815 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d","M/ISYM",mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from ccp4/cmtzlib.c:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ccp4/cmtzlib.c:2817:45: warning: '%1X' directive writing between 1 and 8 bytes into a region of size 7 [-Wformat-overflow=] 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~ ccp4/cmtzlib.c:2817:20: note: directive argument in the range [0, 2147483647] 2817 | sprintf(hdrrec,"COLGRP %-30s %-30s %-4s %1X %4d",mtz->xtal[i]->set[j]->col[k]->label,mtz->xtal[i]->set[j]->col[k]->grpname,mtz->xtal[i]->set[j]->col[k]->grptype,mtz->xtal[i]->set[j]->col[k]->grpposn,mtz->xtal[i]->set[j]->setid); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from ccp4/cmtzlib.c:23: /usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 81 and 95 bytes into a destination of size 81 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/pack_f.f -fPIC -o fortran/.libs/pack_f.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/pxxml.lo fortran/pxxml.f /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/lgglib.lo fortran/lgglib.f /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plot84lib.lo fortran/plot84lib.f /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/plotsubs.lo fortran/plotsubs.f /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/sorting_main.lo fortran/sorting_main.f libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/pxxml.f -fPIC -o fortran/.libs/pxxml.o libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plot84lib.f -fPIC -o fortran/.libs/plot84lib.o libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/lgglib.f -fPIC -o fortran/.libs/lgglib.o libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/plotsubs.f -fPIC -o fortran/.libs/plotsubs.o /bin/sh ./libtool --tag=F77 --mode=compile gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c -o fortran/unix.lo fortran/unix.f fortran/lgglib.f:43:72: 43 | 10 A(I)=CELL(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:51:72: 51 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:52:72: 52 | 10 A(IJ,II)=A1(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:60:72: 60 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:61:72: 61 | 10 OUT(II,IJ)=A1(II,IJ)+A2(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/plotsubs.f:312:72: 312 | 1 CALL PLTDWU(X(I),Y(I)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/lgglib.f:80:72: 80 | 20 V(I1)=A(I,I1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:90:72: 90 | 20 VJ(I1)=A(I1,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:99:72: 99 | DO 10 I2=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:100:72: 100 | 10 A(I1,I2)=A1(I1,I2)*C | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:115:72: 115 | 40 RSLT(I,IJ)=POIMULT(IN1,IM2,V1,V2) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:123:72: 123 | DO 10 IJ=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:124:72: 124 | 10 OUT(II,IJ)=A1(II,IJ)-A2(II,IJ) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/plotsubs.f:352:72: 352 | IF(J) 26,26,27 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/plotsubs.f:377:72: 377 | IF(J) 30,28,20 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:280:72: 280 | DO 20 IC=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/lgglib.f:281:72: 281 | 20 SYM(IC,4,IS)=SYM(IC,4,IS)*CELL(IC) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:668:72: 668 | 10 DOSQ = DOSQ + V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/sorting_main.f -fPIC -o fortran/.libs/sorting_main.o fortran/lgglib.f:1766:72: 1766 | DO 10 I2=1,IN | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:1767:72: 1767 | 10 A(I1,I2)=A1(I1,I2)*C | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1912:72: 1912 | 10 ME(J)=J | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1934:72: 1934 | 40 A(I,J) = A(I,J)*Y | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:1957:72: 1957 | 66 A(K,J) = W | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) fortran/lgglib.f:1980:72: 1980 | 1 IF (TH(I).GT.180.) TH(I) = TH(I) - 360. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) fortran/lgglib.f:2106:72: 2106 | DO 50 J = 1, N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 50 at (1) fortran/lgglib.f:2107:72: 2107 | 50 DETA(I) = DETA(I) + ATA(I,J)*PHI(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) fortran/lgglib.f:2116:72: 2116 | DO 10 J = I,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:2117:72: 2117 | DO 10 K = 1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 10 at (1) fortran/lgglib.f:2118:72: 2118 | 10 ATA(I,J) = ATA(I,J) + A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:2121:72: 2121 | DO 20 J = 1, I-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) fortran/lgglib.f:2122:72: 2122 | 20 ATA(I,J) = ATA(J,I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) fortran/lgglib.f:2136:72: 2136 | 30 B1(I) = POIMULT(M, M, A(1,I), PHI) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) fortran/lgglib.f:2146:72: 2146 | DO 40 J = 1, N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 40 at (1) fortran/lgglib.f:2147:72: 2147 | 40 DETA(I) = DETA(I) + ATA(I,J)*B1(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) fortran/lgglib.f:2239:72: 2239 | DO 4 I=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) fortran/lgglib.f:2240:72: 2240 | 4 S(I,J) = 0.0 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) fortran/lgglib.f:2266:72: 2266 | IF(IFIELD-3) 104,104,103 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2268:72: 2268 | 103 IF(ICOL-ICOLMX) 9987,1000,1000 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2274:72: 2274 | IF (11-IFNUM) 9980,110,110 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2276:72: 2276 | 110 IF (10-IFNUM) 118,115,112 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2278:72: 2278 | 112 IF (6-IFNUM) 125,130,130 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2286:72: 2286 | IF (IFNUM-9) 122,122,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) libtool: compile: gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -c fortran/unix.f -fPIC -o fortran/.libs/unix.o fortran/lgglib.f:2287:72: 2287 | 122 IF (IFNUM-6) 130,130,125 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2303:72: 2303 | IF (IFNUM-6) 138,138,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2314:72: 2314 | IF(ICOL - ICOLMX) 151,151,1000 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2321:72: 2321 | 163 IF (ICOLMX+1-ICOL) 9980,1000,9980 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2330:72: 2330 | IF(ABS(ABS(D) - 1.0) -.0001) 1001,9985,9985 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:2332:72: 2332 | IF(IFIELD - 3) 9987,1002,9987 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) fortran/lgglib.f:3222:72: 3222 | 10 POIMULT=V1(I)*V2(I)+POIMULT | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:4072:72: 4072 | DO 5 J = 1, NATM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) fortran/lgglib.f:4073:72: 4073 | 5 CALL ARRGIVE(3,EMT(1,I),VT((J-1)*3+1,I+3)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) fortran/lgglib.f:5842:72: 5842 | 10 C=C+V(I)*V(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) fortran/lgglib.f:1315:72: 1315 | 1 , (X(I,NATM),I=1,3) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1369:72: 1369 | 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1429:72: 1429 | 1 , (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1489:72: 1489 | 1 res(natm), (X(I,NATM),I=1,3),occ(natm),bfac(natm) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1546:72: 1546 | 1 , (X(I,NATM),I=1,3) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:1598:72: 1598 | 1 SEQ(NATM), RES(NATM), ATOM(NATM) | 1 Warning: Branch at (1) may result in an infinite loop fortran/lgglib.f:2424:10: 2423 | do j = 1, 4 | 2 2424 | rt(j,4) = gt(4,j) | 1 Warning: Array reference at (1) out of bounds (4 > 3) in loop beginning at (2) /bin/sh ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -no-undefined -Wl,-z,relro -o ccp4/libccp4c.la -rpath /usr/lib/aarch64-linux-gnu ccp4/ccp4_array.lo ccp4/cmap_data.lo ccp4/cmtzlib.lo ccp4/ccp4_general.lo ccp4/cmap_header.lo ccp4/csymlib.lo ccp4/ccp4_parser.lo ccp4/cmap_labels.lo ccp4/cvecmat.lo ccp4/ccp4_program.lo ccp4/cmap_open.lo ccp4/library_err.lo ccp4/ccp4_unitcell.lo ccp4/cmap_skew.lo ccp4/library_file.lo ccp4/cmap_accessor.lo ccp4/cmap_stats.lo ccp4/library_utils.lo ccp4/cmap_close.lo ccp4/cmap_symop.lo ccp4/pack_c.lo -lm fortran/plot84lib.f:6390:25: 6390 | CALL QWRITE(IUNITR,IREC,NRECL) | 1 ...... 12406 | CALL QWRITE(IUNIT,NBYTES,1) | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/INTEGER(4)). fortran/plot84lib.f:6473:24: 6449 | CALL QREAD(IUNITR,IREC,NRECL,IER) | 2 ...... 6473 | CALL QREAD(IUNITR,JJXY,4,IER) | 1 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (INTEGER(4)/REAL(4)). fortran/plot84lib.f:8301:22: 8301 | CALL AXIS(X,Y,HTEXT,NCHAR,AXLEN,ANGLE,FVAL,DV) | 1 Warning: Rank mismatch in argument 'label' at (1) (scalar and rank-1) fortran/plot84lib.f:10427:19: 10427 | CALL TRIPLOT(ICLEAR,1) | 1 Warning: Rank mismatch in argument 'line' at (1) (rank-1 and scalar) libtool: link: gcc -shared -fPIC -DPIC ccp4/.libs/ccp4_array.o ccp4/.libs/cmap_data.o ccp4/.libs/cmtzlib.o ccp4/.libs/ccp4_general.o ccp4/.libs/cmap_header.o ccp4/.libs/csymlib.o ccp4/.libs/ccp4_parser.o ccp4/.libs/cmap_labels.o ccp4/.libs/cvecmat.o ccp4/.libs/ccp4_program.o ccp4/.libs/cmap_open.o ccp4/.libs/library_err.o ccp4/.libs/ccp4_unitcell.o ccp4/.libs/cmap_skew.o ccp4/.libs/library_file.o ccp4/.libs/cmap_accessor.o ccp4/.libs/cmap_stats.o ccp4/.libs/library_utils.o ccp4/.libs/cmap_close.o ccp4/.libs/cmap_symop.o ccp4/.libs/pack_c.o -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4c.so.0 -o ccp4/.libs/libccp4c.so.0.0.0 libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so.0" && ln -s "libccp4c.so.0.0.0" "libccp4c.so.0") libtool: link: (cd "ccp4/.libs" && rm -f "libccp4c.so" && ln -s "libccp4c.so.0.0.0" "libccp4c.so") libtool: link: ( cd "ccp4/.libs" && rm -f "libccp4c.la" && ln -s "../libccp4c.la" "libccp4c.la" ) /bin/sh ./libtool --tag=F77 --mode=link gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/aarch64-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm libtool: link: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -Wl,-rpath -Wl,/build/libccp4-6.5.1/ccp4/.libs ccp4/.libs/libccp4c.so -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so.0" && ln -s "libccp4f.so.0.0.0" "libccp4f.so.0") libtool: link: (cd "fortran/.libs" && rm -f "libccp4f.so" && ln -s "libccp4f.so.0.0.0" "libccp4f.so") libtool: link: ( cd "fortran/.libs" && rm -f "libccp4f.la" && ln -s "../libccp4f.la" "libccp4f.la" ) make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/libccp4-6.5.1' make check-am make[2]: Entering directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/libccp4-6.5.1/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libccp4-6.5.1' make install-am make[2]: Entering directory '/build/libccp4-6.5.1' make[3]: Entering directory '/build/libccp4-6.5.1' /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/sh ./libtool --mode=install /usr/bin/install -c ccp4/libccp4c.la fortran/libccp4f.la '/build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.so.0.0.0 /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4c.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so.0 || { rm -f libccp4c.so.0 && ln -s libccp4c.so.0.0.0 libccp4c.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4c.so.0.0.0 libccp4c.so || { rm -f libccp4c.so && ln -s libccp4c.so.0.0.0 libccp4c.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libccp4c.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4c.la libtool: warning: relinking 'fortran/libccp4f.la' libtool: install: (cd /build/libccp4-6.5.1; /bin/sh "/build/libccp4-6.5.1/libtool" --tag F77 --mode=relink gfortran -fno-second-underscore -g -O2 -fdebug-prefix-map=/build/libccp4-6.5.1=. -fstack-protector-strong -fallow-argument-mismatch -no-undefined -Wl,-z,relro -o fortran/libccp4f.la -rpath /usr/lib/aarch64-linux-gnu fortran/libccp4f_la-ccp4_diskio_f.lo fortran/libccp4f_la-ccp4_parser_f.lo fortran/libccp4f_la-cmaplib_f.lo fortran/libccp4f_la-csymlib_f.lo fortran/libccp4f_la-ccp4_general_f.lo fortran/libccp4f_la-ccp4_unitcell_f.lo fortran/libccp4f_la-cmtzlib_f.lo fortran/libccp4f_la-library_f.lo fortran/ccplib.lo fortran/fftlib.lo fortran/modlib.lo fortran/parser.lo fortran/rwbrook.lo fortran/libhtml.lo fortran/keyparse.lo fortran/dna_output.lo fortran/pack_f.lo fortran/pxxml.lo fortran/lgglib.lo fortran/plot84lib.lo fortran/plotsubs.lo fortran/sorting_main.lo fortran/unix.lo ccp4/libccp4c.la -lmmdb2 -lm -inst-prefix-dir /build/libccp4-6.5.1/debian/tmp) libtool: relink: gfortran -shared -fPIC fortran/.libs/libccp4f_la-ccp4_diskio_f.o fortran/.libs/libccp4f_la-ccp4_parser_f.o fortran/.libs/libccp4f_la-cmaplib_f.o fortran/.libs/libccp4f_la-csymlib_f.o fortran/.libs/libccp4f_la-ccp4_general_f.o fortran/.libs/libccp4f_la-ccp4_unitcell_f.o fortran/.libs/libccp4f_la-cmtzlib_f.o fortran/.libs/libccp4f_la-library_f.o fortran/.libs/ccplib.o fortran/.libs/fftlib.o fortran/.libs/modlib.o fortran/.libs/parser.o fortran/.libs/rwbrook.o fortran/.libs/libhtml.o fortran/.libs/keyparse.o fortran/.libs/dna_output.o fortran/.libs/pack_f.o fortran/.libs/pxxml.o fortran/.libs/lgglib.o fortran/.libs/plot84lib.o fortran/.libs/plotsubs.o fortran/.libs/sorting_main.o fortran/.libs/unix.o -L/build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu -lccp4c -lmmdb2 -lm -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-soname -Wl,libccp4f.so.0 -o fortran/.libs/libccp4f.so.0.0.0 libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.so.0.0.0T /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4f.so.0.0.0 libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so.0 || { rm -f libccp4f.so.0 && ln -s libccp4f.so.0.0.0 libccp4f.so.0; }; }) libtool: install: (cd /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libccp4f.so.0.0.0 libccp4f.so || { rm -f libccp4f.so && ln -s libccp4f.so.0.0.0 libccp4f.so; }; }) libtool: install: /usr/bin/install -c fortran/.libs/libccp4f.lai /build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/libccp4f.la libtool: warning: remember to run 'libtool --finish /usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_file_err.h ccp4/ccp4_program.h ccp4/ccp4_unitcell.h ccp4/cmap_errno.h ccp4/cmap_stats.h ccp4/csymlib.h ccp4/library_file.h ccp4/w32mvs.h ccp4/ccp4_fortran.h ccp4/ccp4_spg.h ccp4/ccp4_utils.h ccp4/cmap_header.h ccp4/cmaplib.h ccp4/cvecmat.h ccp4/mtzdata.h ccp4/ccp4_array.h ccp4/ccp4_general.h ccp4/ccp4_sysdep.h ccp4/ccp4_vars.h ccp4/cmap_labels.h ccp4/cmaplib_f.h ccp4/overview.h ccp4/ccp4_errno.h ccp4/ccp4_parser.h ccp4/ccp4_types.h ccp4/cmap_data.h ccp4/cmap_skew.h ccp4/cmtzlib.h ccp4/pack_c.h '/build/libccp4-6.5.1/debian/tmp/usr/include/ccp4' /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 ccp4-config.cmake '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/install -c -m 644 data/atomsf_neutron.lib data/atomsf_electron.lib data/atomsf.lib data/syminfo.lib data/symop.lib data/font84.ascii '/build/libccp4-6.5.1/debian/tmp/usr/share/ccp4' /usr/bin/mkdir -p '/build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libccp4c.pc libccp4f.pc '/build/libccp4-6.5.1/debian/tmp/usr/lib/aarch64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libccp4-6.5.1' make[2]: Leaving directory '/build/libccp4-6.5.1' make[1]: Leaving directory '/build/libccp4-6.5.1' dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a debian/rules override_dh_strip make[1]: Entering directory '/build/libccp4-6.5.1' dh_strip -plibccp4c0 --dbgsym-migration='libccp4c0-dbg (<< 6.5.1-1~)' dh_strip -plibccp4f0 --dbgsym-migration='libccp4f0-dbg (<< 6.5.1-1~)' dh_strip -a -Nlibccp4c0 -Nlibccp4f0 make[1]: Leaving directory '/build/libccp4-6.5.1' dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libccp4c0-dbgsym' in '../libccp4c0-dbgsym_6.5.1-5_arm64.deb'. dpkg-deb: building package 'libccp4c0' in '../libccp4c0_6.5.1-5_arm64.deb'. dpkg-deb: building package 'libccp4f0' in '../libccp4f0_6.5.1-5_arm64.deb'. dpkg-deb: building package 'libccp4-data' in '../libccp4-data_6.5.1-5_all.deb'. dpkg-deb: building package 'libccp4f0-dbgsym' in '../libccp4f0-dbgsym_6.5.1-5_arm64.deb'. dpkg-deb: building package 'libccp4-dev' in '../libccp4-dev_6.5.1-5_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libccp4_6.5.1-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/19852/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/19852/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19852 and its subdirectories I: Current time: Mon Aug 22 10:55:50 +14 2022 I: pbuilder-time-stamp: 1661115350