I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 25 13:38:57 +14 2021 I: pbuilder-time-stamp: 1629848337 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cobra_0.21.0-1.dsc] I: copying [./python-cobra_0.21.0.orig.tar.gz] I: copying [./python-cobra_0.21.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.dDXbCpFY/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 9 22:07:59 2021 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-cobra_0.21.0-1.dsc dpkg-source: info: extracting python-cobra in python-cobra-0.21.0 dpkg-source: info: unpacking python-cobra_0.21.0.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.21.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying no_importlib_resources_for_test.patch dpkg-source: info: applying xfail_test_show_versions.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/16547/tmp/hooks/D01_modify_environment starting debug: Running on codethink16-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/16547/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/16547/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=16547 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vKiN4mw5t5/pbuilderrc_l0Z7 --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vKiN4mw5t5/b2 --logfile b2/build.log python-cobra_0.21.0-1.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 5 10:25 bash -rwxr-xr-x 3 root root 34808 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 23 2020 cat -rwxr-xr-x 1 root root 64512 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 23 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 23 2020 chown -rwxr-xr-x 1 root root 138896 Sep 23 2020 cp -rwxr-xr-x 1 root root 129544 Dec 11 2020 dash -rwxr-xr-x 1 root root 101384 Sep 23 2020 date -rwxr-xr-x 1 root root 80984 Sep 23 2020 dd -rwxr-xr-x 1 root root 89824 Sep 23 2020 df -rwxr-xr-x 1 root root 143088 Sep 23 2020 dir -rwxr-xr-x 1 root root 76152 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 18440 Nov 8 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 23 2020 ln -rwxr-xr-x 1 root root 52720 Feb 8 2020 login -rwxr-xr-x 1 root root 143088 Sep 23 2020 ls -rwxr-xr-x 1 root root 161960 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 23 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 29 09:09 more -rwsr-xr-x 1 root root 51360 Jul 29 09:09 mount -rwxr-xr-x 1 root root 14496 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 23 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 23 2020 rm -rwxr-xr-x 1 root root 43880 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 25 13:39 sh -> bash lrwxrwxrwx 1 root root 4 Aug 21 23:25 sh.distrib -> dash -rwxr-xr-x 1 root root 35656 Sep 23 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 23 2020 stty -rwsr-xr-x 1 root root 67776 Jul 29 09:09 su -rwxr-xr-x 1 root root 35672 Sep 23 2020 sync -rwxr-xr-x 1 root root 535768 Feb 17 2021 tar -rwxr-xr-x 1 root root 10568 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 23 2020 touch -rwxr-xr-x 1 root root 31512 Sep 23 2020 true -rwxr-xr-x 1 root root 14264 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 29 09:09 umount -rwxr-xr-x 1 root root 35640 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 23 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/16547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 4.65.1), python3-tabulate, python3-sbml5, python3-simplejson, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0), libsbml5, python3-matplotlib, python3-appdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang; however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 0.17.0); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 4.65.1); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema (>> 2.5.0); however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5; however: Package libsbml5 is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-appdirs; however: Package python3-appdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd2{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcxsparse3{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphblas3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libklu1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldl2{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} libreadline8{a} libsbml5{a} libsigsegv2{a} libsliplu1{a} libspqr2{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libtiff5{a} libtool{a} libuchardet0{a} libumfpack5{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python-pip-whl{a} python3{a} python3-appdirs{a} python3-attr{a} python3-certifi{a} python3-chardet{a} python3-colorama{a} python3-commonmark{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-distutils{a} python3-future{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jsonschema{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pydantic{a} python3-pygments{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pytest-benchmark{a} python3-requests{a} python3-rfc3986{a} python3-rich{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-toml{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} swig{a} swig4.0{a} ttf-bitstream-vera{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-elasticsearch python3-freezegun python3-graphviz python3-html5lib python3-jinja2 python3-lxml python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-scipy python3-tables python3-tk python3-xlwt wget 0 packages upgraded, 173 newly installed, 0 to remove and 0 not upgraded. Need to get 86.4 MB of archives. After unpacking 460 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 cython3 arm64 0.29.21-3+b1 [1239 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libsuitesparseconfig5 arm64 1:5.8.1+dfsg-2 [22.8 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libamd2 arm64 1:5.8.1+dfsg-2 [33.1 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libbtf1 arm64 1:5.8.1+dfsg-2 [24.4 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libcamd2 arm64 1:5.8.1+dfsg-2 [33.9 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libccolamd2 arm64 1:5.8.1+dfsg-2 [36.6 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libcolamd2 arm64 1:5.8.1+dfsg-2 [31.0 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libmetis5 arm64 5.1.0.dfsg-7 [154 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libcholmod3 arm64 1:5.8.1+dfsg-2 [290 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libcxsparse3 arm64 1:5.8.1+dfsg-2 [72.4 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libltdl7 arm64 2.4.6-15 [390 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libglpk40 arm64 5.0-1 [344 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libgmpxx4ldbl arm64 2:6.2.1+dfsg-1 [337 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libgmp-dev arm64 2:6.2.1+dfsg-1 [625 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libgraphblas3 arm64 1:5.8.1+dfsg-2 [3762 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libklu1 arm64 1:5.8.1+dfsg-2 [75.4 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libldl2 arm64 1:5.8.1+dfsg-2 [24.0 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libmongoose2 arm64 1:5.8.1+dfsg-2 [43.5 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libumfpack5 arm64 1:5.8.1+dfsg-2 [201 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 librbio2 arm64 1:5.8.1+dfsg-2 [37.8 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libspqr2 arm64 1:5.8.1+dfsg-2 [74.3 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libsliplu1 arm64 1:5.8.1+dfsg-2 [45.6 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libsuitesparse-dev arm64 1:5.8.1+dfsg-2 [4032 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libglpk-dev arm64 5.0-1 [428 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libsbml5 arm64 5.19.0+dfsg-1 [1835 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 python-pip-whl all 20.3.4-4 [1948 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 python3-appdirs all 1.4.4-1 [12.7 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 python3-attr all 20.3.0-1 [52.9 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 python3-certifi all 2020.6.20-1 [151 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 python3-colorama all 0.4.4-1 [28.5 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 python3-commonmark all 0.9.1-3 [44.9 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 python3-cpuinfo all 5.0.0-2 [19.0 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-2 [17.5 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 121 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 python3-depinfo arm64 1.6.0-1 [5920 B] Get: 123 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 python3-diskcache all 5.2.1-2 [544 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 python3-future all 0.18.2-5 [349 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 python3-h11 all 0.12.0-1 [47.9 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 python3-sniffio all 1.1.0-1 [6216 B] Get: 129 http://deb.debian.org/debian bullseye/main arm64 python3-httpcore all 0.12.3-1 [30.3 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 python3-idna all 2.10-1 [37.4 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 python3-rfc3986 all 1.4.0-3 [21.8 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 python3-httpx all 0.16.1-1 [65.5 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 python3-zipp all 1.0.0-3 [6060 B] Get: 135 http://deb.debian.org/debian bullseye/main arm64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 137 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 python3-pyrsistent arm64 0.15.5-1+b3 [58.2 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 python3-jsonschema all 3.2.0-3 [46.3 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 143 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 144 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 python3-mpmath all 1.2.1-1 [418 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 python3-swiglpk arm64 4.65.1-1 [59.7 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 python3-sympy all 1.7.1-3 [4031 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 python3-optlang all 1.4.4-2 [67.7 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 python3-packaging all 20.9-2 [33.5 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 151 http://deb.debian.org/debian bullseye/main arm64 python3-pandas-lib arm64 1.1.5+dfsg-2 [2914 kB] Get: 152 http://deb.debian.org/debian bullseye/main arm64 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 153 http://deb.debian.org/debian bullseye/main arm64 python3-wheel all 0.34.2-1 [24.0 kB] Get: 154 http://deb.debian.org/debian bullseye/main arm64 python3-pip all 20.3.4-4 [337 kB] Get: 155 http://deb.debian.org/debian bullseye/main arm64 python3-pipdeptree arm64 2.0.0-1 [20.3 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 157 http://deb.debian.org/debian bullseye/main arm64 python3-py all 1.10.0-1 [94.2 kB] Get: 158 http://deb.debian.org/debian bullseye/main arm64 python3-pydantic all 1.7.4-1 [119 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 python3-toml all 0.10.1-1 [15.9 kB] Get: 161 http://deb.debian.org/debian bullseye/main arm64 python3-pytest all 6.0.2-2 [211 kB] Get: 162 http://deb.debian.org/debian bullseye/main arm64 python3-pytest-benchmark all 3.2.2-2 [46.4 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 164 http://deb.debian.org/debian bullseye/main arm64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 python3-typing-extensions all 3.7.4.3-1 [29.8 kB] Get: 166 http://deb.debian.org/debian bullseye/main arm64 python3-rich all 9.11.0-1 [150 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml.clib arm64 0.2.2-1+b2 [108 kB] Get: 168 http://deb.debian.org/debian bullseye/main arm64 python3-ruamel.yaml all 0.16.12-2 [110 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 swig4.0 arm64 4.0.2-1 [1295 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 swig all 4.0.2-1 [330 kB] Get: 171 http://deb.debian.org/debian bullseye/main arm64 python3-sbml5 arm64 5.19.0+dfsg-1 [3081 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 python3-simplejson arm64 3.17.2-1 [60.6 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 python3-tabulate all 0.8.7-0.1 [33.8 kB] Fetched 86.4 MB in 2s (44.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../4-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../6-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... 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Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up libgraphblas3:arm64 (1:5.8.1+dfsg-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libldl2:arm64 (1:5.8.1+dfsg-2) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libmetis5:arm64 (5.1.0.dfsg-7) ... Setting up file (1:5.39-3) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libbtf1:arm64 (1:5.8.1+dfsg-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libgmpxx4ldbl:arm64 (2:6.2.1+dfsg-1) ... Setting up libexpat1-dev:arm64 (2.2.10-2) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libltdl7:arm64 (2.4.6-15) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libcxsparse3:arm64 (1:5.8.1+dfsg-2) ... 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Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up swig (4.0.2-1) ... Setting up libgmp-dev:arm64 (2:6.2.1+dfsg-1) ... Setting up mime-support (3.66) ... Setting up libcolamd2:arm64 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libsliplu1:arm64 (1:5.8.1+dfsg-2) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libcamd2:arm64 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:arm64 (1:5.8.1+dfsg-2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up libglpk40:arm64 (5.0-1) ... Setting up libsbml5 (5.19.0+dfsg-1) ... Setting up liblapack-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:arm64 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:arm64 (1:5.8.1+dfsg-2) ... Setting up python-pip-whl (20.3.4-4) ... Setting up libcholmod3:arm64 (1:5.8.1+dfsg-2) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:arm64 (1:5.8.1+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:arm64 (3.9.2-1) ... Setting up libumfpack5:arm64 (1:5.8.1+dfsg-2) ... Setting up python3.9 (3.9.2-1) ... Setting up libsuitesparse-dev:arm64 (1:5.8.1+dfsg-2) ... Setting up libpython3.9-dev:arm64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-sbml5 (5.19.0+dfsg-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up libglpk-dev:arm64 (5.0-1) ... Setting up python3-pydantic (1.7.4-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-h11 (0.12.0-1) ... Setting up python3-typing-extensions (3.7.4.3-1) ... Setting up python3-cpuinfo (5.0.0-2) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-pyrsistent:arm64 (0.15.5-1+b3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-diskcache (5.2.1-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-appdirs (1.4.4-1) ... Setting up python3-swiglpk (4.65.1-1) ... Setting up python3-commonmark (0.9.1-3) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-sniffio (1.1.0-1) ... Setting up python3-sympy (1.7.1-3) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:arm64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-colorama (0.4.4-1) ... Setting up python3-ruamel.yaml.clib:arm64 (0.2.2-1+b2) ... Setting up python3-tabulate (0.8.7-0.1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-rfc3986 (1.4.0-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-depinfo (1.6.0-1) ... Setting up python3-pip (20.3.4-4) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-ruamel.yaml (0.16.12-2) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-pipdeptree (2.0.0-1) ... Setting up python3-optlang (1.4.4-2) ... /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_cplex_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:58: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_glpk_interface.py:61: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:65: SyntaxWarning: "is not" with a literal. Did you mean "!="? if status is not "time_limit": /usr/lib/python3/dist-packages/slow_tests/test_miplib_gurobi_interface.py:68: SyntaxWarning: "is" with a literal. Did you mean "=="? if status is "optimal": Setting up python3-httpcore (0.12.3-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-rich (9.11.0-1) ... Setting up python3-pandas-lib:arm64 (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-httpx (0.16.1-1) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-pytest-benchmark (3.2.2-2) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Temporary failure in name resolution I: Running cd /build/python-cobra-0.21.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.21.0-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.21.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Map '/build/python-cobra-0.21.0' wordt binnengegaan dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Map '/build/python-cobra-0.21.0' wordt verlaten dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/exceptions.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra copying src/cobra/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_medium.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/test_manipulation.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/conftest.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test copying src/cobra/test/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web copying src/cobra/io/schema_v1.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io creating /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/validation.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/update_pickles.py -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook_fva.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.media -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/salmonella.genes -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/raven.mat -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.yml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.mat -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/mini.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/invalid0.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/example_notes.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/e_coli_core.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/annotation.xml -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data copying src/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build; python3.9 -m pytest ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-0.21.0, configfile: tox.ini plugins: benchmark-3.2.2 collected 28 items cobra/test/test_manipulation.py ........... [ 39%] cobra/test/test_medium.py ................. [100%] =============================== warnings summary =============================== cobra/core/dictlist.py:215 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? if current_length is 0: cobra/core/gene.py:247 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:247: DeprecationWarning: invalid escape sequence \( the_gene_re = re.compile("(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(self.id)) cobra/core/gene.py:267 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py:267: DeprecationWarning: invalid escape sequence \( "(^|(?<=( |\()))%s(?=( |\)|$))" % re.escape(other_gene.id) cobra/core/reaction.py:43 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py:43: DeprecationWarning: invalid escape sequence \s compartment_finder = re.compile("^\s*(\[[A-Za-z]\])\s*:*") cobra/flux_analysis/gapfilling.py:13 /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py:13: DeprecationWarning: invalid escape sequence \s """Class for performing gap filling. .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_escape_ids /usr/lib/python3/dist-packages/optlang/interface.py:1358: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working if isinstance(stuff, collections.Iterable): .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_gene_knockout_computation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_sbo_annotation .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_output_type .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py::TestManipulation::test_prune_unused_rxns_functionality .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_demand .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestTypeDetection::test_sink /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:544: DeprecationWarning: add_reaction deprecated. Use add_reactions instead warn("add_reaction deprecated. Use add_reactions instead", DeprecationWarning) .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestModelMedium::test_model_medium /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py:298: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn( .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py: 54 warnings /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py:104: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. medium = pd.Series() .pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py::TestErrorsAndExceptions::test_no_names_or_boundary_reactions /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py:49: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning. matches = pd.Series( -- Docs: https://docs.pytest.org/en/stable/warnings.html Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: min (1/2) Computing stats ... group 1/1: min (2/2) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: max (1/2) Computing stats ... group 1/1: max (2/2) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: mean (1/2) Computing stats ... group 1/1: mean (2/2) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: median (1/2) Computing stats ... group 1/1: median (2/2) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: iqr (1/2) Computing stats ... group 1/1: iqr (2/2) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: stddev (1/2) Computing stats ... group 1/1: stddev (2/2) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops (1/2) Computing stats ... group 1/1: ops (2/2) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/2) Computing stats ... group 1/1: ops: outliers (2/2) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/2) Computing stats ... group 1/1: ops: rounds (2/2) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/2) Computing stats ... group 1/1: ops: iterations (2/2) -------------------------------------------------------------------------------------- benchmark: 2 tests -------------------------------------------------------------------------------------- Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ test_benchmark_medium_mip 47.7816 (1.0) 52.3291 (1.0) 50.3167 (1.0) 1.2554 (1.0) 50.3826 (1.0) 1.9142 (1.0) 8;0 19.8741 (1.0) 20 1 test_benchmark_medium_linear 51.2128 (1.07) 55.7728 (1.07) 53.2502 (1.06) 1.4732 (1.17) 52.7227 (1.05) 2.4580 (1.28) 6;0 18.7793 (0.94) 19 1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ======================= 28 passed, 72 warnings in 21.10s ======================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-cobra-0.21.0/debian/python3-cobra running install running build running build_py running install_lib creating /build/python-cobra-0.21.0/debian/python3-cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9 creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/.benchmarks creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/exceptions.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__pycache__ creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/solution.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/reaction.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/group.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/model.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/formula.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/metabolite.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/object.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/species.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/gene.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/dictlist.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/singleton.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/configuration.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/group.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/model.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/object.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/core/species.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/fastcc.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/helpers.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/yaml.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/sbml.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/mat.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/json.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/dict.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/schema_v1.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/load.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/biomodels_repository.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/web/load.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/json.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/validate.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/modify.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/delete.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/annotations.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/annotations.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/sampling.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/optgp.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/achr.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/achr.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/hr_sampler.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/optgp.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/sampling/sampling.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/model_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/summary.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/metabolite_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/model_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/reaction_summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/summary/summary.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_medium.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/conftest.cpython-39-pytest-6.0.2.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__pycache__ creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/JSON_with_inf_bounds.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/annotation.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/e_coli_core.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/example_notes.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/fbc_ex2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/iJO1366.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid0.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/invalid_annotation_format.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.mat -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini.yml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.mat -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/raven.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.genes -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.media -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/salmonella.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_fva.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/update_pickles.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_format.json -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/valid_annotation_output.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/data/validation.xml -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/conftest.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_manipulation.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/test/test_medium.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util creating /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/util.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/solver.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/context.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/array.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__pycache__/__init__.cpython-39.pyc -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/array.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/context.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/util/util.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/__init__.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra copying /build/python-cobra-0.21.0/.pybuild/cpython3_3.9_cobra/build/cobra/exceptions.py -> /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/configuration.py to configuration.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/dictlist.py to dictlist.cpython-39.pyc /usr/lib/python3.9/dist-packages/cobra/core/dictlist.py:215: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/formula.py to formula.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/gene.py to gene.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/group.py to group.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/metabolite.py to metabolite.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/model.py to model.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/object.py to object.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/singleton.py to singleton.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/solution.py to solution.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/core/species.py to species.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/room.py to room.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/web/load.py to load.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/dict.py to dict.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/json.py to json.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/mat.py to mat.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/sbml.py to sbml.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/io/yaml.py to yaml.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/delete.py to delete.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/modify.py to modify.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/manipulation/validate.py to validate.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/annotations.py to annotations.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/achr.py to achr.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/optgp.py to optgp.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/sampling/sampling.py to sampling.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/summary/summary.py to summary.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/conftest.py to conftest.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/test/test_medium.py to test_medium.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/array.py to array.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/context.py to context.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/solver.py to solver.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/util/util.py to util.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra/exceptions.py to exceptions.cpython-39.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/python-cobra-0.21.0/debian/python3-cobra/usr/lib/python3.9/dist-packages/cobra-0.21.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Map '/build/python-cobra-0.21.0' wordt binnengegaan dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Map '/build/python-cobra-0.21.0' wordt verlaten dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:229: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: pakket 'python3-cobra' wordt gebouwd in '../python3-cobra_0.21.0-1_arm64.deb'. dpkg-deb: pakket 'python-cobra-data' wordt gebouwd in '../python-cobra-data_0.21.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-cobra_0.21.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/16547/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/16547/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16547 and its subdirectories I: Current time: Wed Aug 25 13:42:47 +14 2021 I: pbuilder-time-stamp: 1629848567