I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 28 07:43:51 +14 2021 I: pbuilder-time-stamp: 1627407831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.gbngkVKJ/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 13 05:42:28 2021 +14 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.0~git20210119.80e82ac dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14601/tmp/hooks/D01_modify_environment starting debug: Running on ff64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/14601/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/14601/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=e287730e2bba4a3c9916f90afa8b8b99 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=14601 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2RYBGPOeet/pbuilderrc_hwpU --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2RYBGPOeet/b2 --logfile b2/build.log --extrapackages usrmerge fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc' SUDO_GID=114 SUDO_UID=109 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 22 16:26 bash -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash -rwxr-xr-x 1 root root 75880 Sep 23 2020 date -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd -rwxr-xr-x 1 root root 59912 Sep 23 2020 df -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir -rwxr-xr-x 1 root root 55012 Feb 8 04:38 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 8 04:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 27 06:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 13:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 13:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 3 13:30 gzip -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln -rwxr-xr-x 1 root root 35068 Feb 8 2020 login -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls -rwxr-xr-x 1 root root 99940 Feb 8 04:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 8 04:38 more -rwsr-xr-x 1 root root 34400 Feb 8 04:38 mount -rwxr-xr-x 1 root root 9824 Feb 8 04:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Jun 22 16:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Jul 28 07:45 sh -> bash lrwxrwxrwx 1 root root 4 Jul 26 23:27 sh.distrib -> dash -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty -rwsr-xr-x 1 root root 46704 Feb 8 04:38 su -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync -rwxr-xr-x 1 root root 340872 Feb 17 23:55 tar -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch -rwxr-xr-x 1 root root 22496 Sep 23 2020 true -rwxr-xr-x 1 root root 9636 Feb 27 06:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 8 04:38 umount -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 13:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 8 04:38 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 13:30 zcat -rwxr-xr-x 1 root root 1678 Mar 3 13:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 13:30 zdiff -rwxr-xr-x 1 root root 29 Mar 3 13:30 zegrep -rwxr-xr-x 1 root root 29 Mar 3 13:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 13:30 zforce -rwxr-xr-x 1 root root 7585 Mar 3 13:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 13:30 zless -rwxr-xr-x 1 root root 1842 Mar 3 13:30 zmore -rwxr-xr-x 1 root root 4553 Mar 3 13:30 znew I: user script /srv/workspace/pbuilder/14601/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libcbor0{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real2019.2{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas3{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp24{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libmumps-5.3{a} libmumps-dev{a} libmumps-headers-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.14{a} libpetsc-real3.14-dev{a} libpetsc3.14-dev-common{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libptscotch-6.1{a} libptscotch-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.1{a} libscotch-6.1{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.14{a} libslepc-real3.14-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-ffcx{a} python3-fiat{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-sympy{a} python3-ufl{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common ksh libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgl1-mesa-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpetsc3.14-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 246 newly installed, 0 to remove and 0 not upgraded. Need to get 145 MB of archives. After unpacking 768 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.6 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libfido2-1 armhf 1.6.0-2 [48.0 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf openssh-client armhf 1:8.4p1-5 [842 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libgfortran-10-dev armhf 10.2.1-6 [289 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf gfortran-10 armhf 10.2.1-6 [7123 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf gfortran armhf 4:10.2.1-1 [1424 B] Get: 73 http://deb.debian.org/debian bullseye/main armhf libnl-3-200 armhf 3.4.0-1+b1 [55.5 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libnl-route-3-200 armhf 3.4.0-1+b1 [136 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libibverbs1 armhf 33.2-1 [53.0 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf ibverbs-providers armhf 33.2-1 [25.4 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf icu-devtools armhf 67.1-7 [180 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libaec0 armhf 1.0.4-1 [20.4 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libsz2 armhf 1.0.4-1 [6616 B] Get: 80 http://deb.debian.org/debian bullseye/main armhf libaec-dev armhf 1.0.4-1 [18.3 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libsuitesparseconfig5 armhf 1:5.8.1+dfsg-2 [22.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libamd2 armhf 1:5.8.1+dfsg-2 [29.2 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libarpack2 armhf 3.8.0-1 [87.9 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libblas-dev armhf 3.9.0-3 [118 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf liblapack-dev armhf 3.9.0-3 [1719 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libarpack2-dev armhf 3.8.0-1 [105 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libbasix0 armhf 0.0.1~git20210122.4f10ef2-2 [125 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libeigen3-dev all 3.3.9-2 [858 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libbasix-dev armhf 0.0.1~git20210122.4f10ef2-2 [4220 B] Get: 94 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74.0 armhf 1.74.0-9 [244 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74-dev armhf 1.74.0-9 [245 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [255 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libboost-chrono-dev armhf 1.74.0.3 [4960 B] Get: 100 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [321 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [394 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [250 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 105 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [275 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [289 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B] Get: 110 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [459 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libicu-dev armhf 67.1-7 [9343 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [572 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [271 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams-dev armhf 1.74.0.3 [4316 B] Get: 115 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74.0 armhf 1.74.0-9 [350 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74-dev armhf 1.74.0-9 [410 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf libboost-math-dev armhf 1.74.0.3 [4532 B] Get: 118 http://deb.debian.org/debian bullseye/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [127 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf librdmacm1 armhf 33.2-1 [60.8 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libfabric1 armhf 1.11.0-2 [319 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf libhwloc15 armhf 2.4.1+dfsg-1 [125 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libxnvctrl0 armhf 460.73.01-1 [25.8 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf ocl-icd-libopencl1 armhf 2.2.14-2 [39.7 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf libhwloc-plugins armhf 2.4.1+dfsg-1 [19.7 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf libpmix2 armhf 4.0.0-4 [487 kB] Get: 134 http://deb.debian.org/debian bullseye/main armhf libopenmpi3 armhf 4.1.0-10 [1831 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf libboost-mpi1.74.0 armhf 1.74.0-9 [274 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf openmpi-common all 4.1.0-10 [179 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libnl-3-dev armhf 3.4.0-1+b1 [97.1 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libnl-route-3-dev armhf 3.4.0-1+b1 [160 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libibverbs-dev armhf 33.2-1 [183 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libnuma1 armhf 2.0.12-1+b1 [22.7 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libnuma-dev armhf 2.0.12-1+b1 [37.0 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libltdl7 armhf 2.4.6-15 [388 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libltdl-dev armhf 2.4.6-15 [159 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf libhwloc-dev armhf 2.4.1+dfsg-1 [208 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [169 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [101 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.6 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libevent-dev armhf 2.1.12-stable-1 [296 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libpmix-dev armhf 4.0.0-4 [617 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf openmpi-bin armhf 4.1.0-10 [206 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libopenmpi-dev armhf 4.1.0-10 [1143 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf mpi-default-dev armhf 1.13 [5476 B] Get: 156 http://deb.debian.org/debian bullseye/main armhf libboost-mpi1.74-dev armhf 1.74.0-9 [303 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf libboost-mpi-dev armhf 1.74.0.3 [4420 B] Get: 158 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [339 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [384 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B] Get: 161 http://deb.debian.org/debian bullseye/main armhf libboost-serialization-dev armhf 1.74.0.3 [4560 B] Get: 162 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74.0 armhf 1.74.0-9 [271 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74-dev armhf 1.74.0-9 [286 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B] Get: 165 http://deb.debian.org/debian bullseye/main armhf libboost-timer1.74.0 armhf 1.74.0-9 [246 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf libboost-timer1.74-dev armhf 1.74.0-9 [248 kB] Get: 167 http://deb.debian.org/debian bullseye/main armhf libboost-timer-dev armhf 1.74.0.3 [4456 B] Get: 168 http://deb.debian.org/debian bullseye/main armhf libbtf1 armhf 1:5.8.1+dfsg-2 [23.1 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libcamd2 armhf 1:5.8.1+dfsg-2 [29.6 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf libccolamd2 armhf 1:5.8.1+dfsg-2 [30.7 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf libcolamd2 armhf 1:5.8.1+dfsg-2 [27.3 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf libmetis5 armhf 5.1.0.dfsg-7 [137 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf libcholmod3 armhf 1:5.8.1+dfsg-2 [222 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf libcombblas1.16.0 armhf 1.6.2-6 [255 kB] Get: 175 http://deb.debian.org/debian bullseye/main armhf libcxsparse3 armhf 1:5.8.1+dfsg-2 [52.3 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-103-1 armhf 1.10.6+repack-4 [1225 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf libfftw3-double3 armhf 3.3.8-2 [432 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf libfftw3-single3 armhf 3.3.8-2 [715 kB] Get: 179 http://deb.debian.org/debian bullseye/main armhf libfftw3-mpi3 armhf 3.3.8-2 [51.1 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf libsuperlu-dist6 armhf 6.2.0+dfsg1-3 [345 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf libhypre armhf 2.18.2-1 [1107 kB] Get: 182 http://deb.debian.org/debian bullseye/main armhf libklu1 armhf 1:5.8.1+dfsg-2 [51.1 kB] Get: 183 http://deb.debian.org/debian bullseye/main armhf mpi-default-bin armhf 1.13 [4672 B] Get: 184 http://deb.debian.org/debian bullseye/main armhf libscalapack-openmpi2.1 armhf 2.1.0-4 [1243 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf libmumps-5.3 armhf 5.3.5-2 [1474 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf libptscotch-6.1 armhf 6.1.0-2 [627 kB] Get: 187 http://deb.debian.org/debian bullseye/main armhf libsuperlu5 armhf 5.2.2+dfsg1-2 [136 kB] Get: 188 http://deb.debian.org/debian bullseye/main armhf libumfpack5 armhf 1:5.8.1+dfsg-2 [133 kB] Get: 189 http://deb.debian.org/debian bullseye/main armhf libpetsc-real3.14 armhf 3.14.5+dfsg1-4 [5188 kB] Get: 190 http://deb.debian.org/debian bullseye/main armhf libparpack2 armhf 3.8.0-1 [84.9 kB] Get: 191 http://deb.debian.org/debian bullseye/main armhf libslepc-real3.14 armhf 3.14.2+dfsg1-1 [935 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf libdolfinx-real2019.2 armhf 2019.2.0~git20210130.c14cb0a-5 [547 kB] Get: 193 http://deb.debian.org/debian bullseye/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 194 http://deb.debian.org/debian bullseye/main armhf libpetsc3.14-dev-common all 3.14.5+dfsg1-4 [206 kB] Get: 195 http://deb.debian.org/debian bullseye/main armhf libgraphblas3 armhf 1:5.8.1+dfsg-2 [4504 kB] Get: 196 http://deb.debian.org/debian bullseye/main armhf libldl2 armhf 1:5.8.1+dfsg-2 [22.9 kB] Get: 197 http://deb.debian.org/debian bullseye/main armhf libmongoose2 armhf 1:5.8.1+dfsg-2 [42.9 kB] Get: 198 http://deb.debian.org/debian bullseye/main armhf librbio2 armhf 1:5.8.1+dfsg-2 [31.8 kB] Get: 199 http://deb.debian.org/debian bullseye/main armhf libspqr2 armhf 1:5.8.1+dfsg-2 [69.1 kB] Get: 200 http://deb.debian.org/debian bullseye/main armhf libsliplu1 armhf 1:5.8.1+dfsg-2 [48.5 kB] Get: 201 http://deb.debian.org/debian bullseye/main armhf libsuitesparse-dev armhf 1:5.8.1+dfsg-2 [4816 kB] Get: 202 http://deb.debian.org/debian bullseye/main armhf libsuperlu-dev armhf 5.2.2+dfsg1-2 [21.4 kB] Get: 203 http://deb.debian.org/debian bullseye/main armhf libhypre-dev armhf 2.18.2-1 [154 kB] Get: 204 http://deb.debian.org/debian bullseye/main armhf libscotch-6.1 armhf 6.1.0-2 [388 kB] Get: 205 http://deb.debian.org/debian bullseye/main armhf libscotch-dev armhf 6.1.0-2 [1413 kB] Get: 206 http://deb.debian.org/debian bullseye/main armhf libptscotch-dev armhf 6.1.0-2 [1285 kB] Get: 207 http://deb.debian.org/debian bullseye/main armhf libscalapack-openmpi-dev armhf 2.1.0-4 [13.7 kB] Get: 208 http://deb.debian.org/debian bullseye/main armhf libscalapack-mpi-dev armhf 2.1.0-4 [9728 B] Get: 209 http://deb.debian.org/debian bullseye/main armhf libmumps-headers-dev all 5.3.5-2 [34.1 kB] Get: 210 http://deb.debian.org/debian bullseye/main armhf libmumps-dev armhf 5.3.5-2 [1388 kB] Get: 211 http://deb.debian.org/debian bullseye/main armhf libfftw3-bin armhf 3.3.8-2 [43.5 kB] Get: 212 http://deb.debian.org/debian bullseye/main armhf libfftw3-dev armhf 3.3.8-2 [1141 kB] Get: 213 http://deb.debian.org/debian bullseye/main armhf libfftw3-mpi-dev armhf 3.3.8-2 [56.4 kB] Get: 214 http://deb.debian.org/debian bullseye/main armhf libssl-dev armhf 1.1.1k-1 [1606 kB] Get: 215 http://deb.debian.org/debian bullseye/main armhf opencl-c-headers all 3.0~2020.12.18-1 [41.8 kB] Get: 216 http://deb.debian.org/debian bullseye/main armhf opencl-clhpp-headers all 3.0~2.0.13-1 [41.5 kB] Get: 217 http://deb.debian.org/debian bullseye/main armhf ocl-icd-opencl-dev armhf 2.2.14-2 [11.3 kB] Get: 218 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-fortran-102 armhf 1.10.6+repack-4 [94.2 kB] Get: 219 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-hl-100 armhf 1.10.6+repack-4 [80.2 kB] Get: 220 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-hl-fortran-100 armhf 1.10.6+repack-4 [51.1 kB] Get: 221 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-cpp-103-1 armhf 1.10.6+repack-4 [133 kB] Get: 222 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-hl-cpp-100 armhf 1.10.6+repack-4 [37.4 kB] Get: 223 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 224 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [242 kB] Get: 225 http://deb.debian.org/debian bullseye/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB] Get: 226 http://deb.debian.org/debian bullseye/main armhf libhdf5-openmpi-dev armhf 1.10.6+repack-4 [2517 kB] Get: 227 http://deb.debian.org/debian bullseye/main armhf libhdf5-mpi-dev armhf 1.10.6+repack-4 [32.5 kB] Get: 228 http://deb.debian.org/debian bullseye/main armhf libsuperlu-dist-dev armhf 6.2.0+dfsg1-3 [253 kB] Get: 229 http://deb.debian.org/debian bullseye/main armhf libpetsc-real3.14-dev armhf 3.14.5+dfsg1-4 [6071 kB] Get: 230 http://deb.debian.org/debian bullseye/main armhf libparpack2-dev armhf 3.8.0-1 [98.5 kB] Get: 231 http://deb.debian.org/debian bullseye/main armhf libslepc-real3.14-dev armhf 3.14.2+dfsg1-1 [4358 kB] Get: 232 http://deb.debian.org/debian bullseye/main armhf libdolfinx-real-dev armhf 2019.2.0~git20210130.c14cb0a-5 [49.5 kB] Get: 233 http://deb.debian.org/debian bullseye/main armhf libxml2-dev armhf 2.9.10+dfsg-6.7 [722 kB] Get: 234 http://deb.debian.org/debian bullseye/main armhf python3-cffi-backend armhf 1.14.5-1 [76.9 kB] Get: 235 http://deb.debian.org/debian bullseye/main armhf python3-ply all 3.11-4 [65.5 kB] Get: 236 http://deb.debian.org/debian bullseye/main armhf python3-pycparser all 2.20-3 [74.5 kB] Get: 237 http://deb.debian.org/debian bullseye/main armhf python3-cffi all 1.14.5-1 [87.9 kB] Get: 238 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 239 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 240 http://deb.debian.org/debian bullseye/main armhf python3-mpmath all 1.2.1-1 [418 kB] Get: 241 http://deb.debian.org/debian bullseye/main armhf python3-sympy all 1.7.1-3 [4031 kB] Get: 242 http://deb.debian.org/debian bullseye/main armhf python3-fiat all 2019.2.0~git20210116.0439689-2 [70.6 kB] Get: 243 http://deb.debian.org/debian bullseye/main armhf python3-ufl all 2019.2.0~git20210211.d60cd09-1 [156 kB] Get: 244 http://deb.debian.org/debian bullseye/main armhf python3-basix armhf 0.0.1~git20210122.4f10ef2-2 [75.3 kB] Get: 245 http://deb.debian.org/debian bullseye/main armhf python3-ffcx all 2019.2.0~git20210122.22ca4c0-2 [106 kB] Get: 246 http://deb.debian.org/debian bullseye/main armhf libdolfinx-dev all 2019.2.0~git20210130.c14cb0a-5 [149 kB] Fetched 145 MB in 14s (10.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:armhf. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../001-libncurses6_6.2+20201114-2_armhf.deb ... Unpacking libncurses6:armhf (6.2+20201114-2) ... Selecting previously unselected package libprocps8:armhf. 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Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../009-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../010-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_armhf.deb ... Unpacking libedit2:armhf (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:armhf. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_armhf.deb ... Unpacking libcbor0:armhf (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:armhf. Preparing to unpack .../013-libfido2-1_1.6.0-2_armhf.deb ... Unpacking libfido2-1:armhf (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a8.4p1-5_armhf.deb ... 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Preparing to unpack .../044-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../045-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.3.4_all.deb ... 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Setting up libscotch-6.1:armhf (6.1.0-2) ... Setting up libfido2-1:armhf (1.6.0-2) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libboost-timer1.74.0:armhf (1.74.0-9) ... Setting up libicu-dev:armhf (67.1-7) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libsuitesparseconfig5:armhf (1:5.8.1+dfsg-2) ... Setting up libboost-filesystem-dev:armhf (1.74.0.3) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up libblas-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.0.4-1) ... Setting up librbio2:armhf (1:5.8.1+dfsg-2) ... Setting up libboost-thread1.74.0:armhf (1.74.0-9) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libamd2:armhf (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-1) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libcolamd2:armhf (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:armhf (3.4.3-2+b1) ... Setting up libboost-chrono-dev:armhf (1.74.0.3) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-math-dev:armhf (1.74.0.3) ... Setting up libedit2:armhf (3.1-20191231-2+b1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libaec-dev:armhf (1.0.4-1) ... Setting up libarpack2:armhf (3.8.0-1) ... Setting up libjpeg-dev:armhf (1:2.0.6-4) ... Setting up libsuperlu5:armhf (5.2.2+dfsg1-2) ... Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:armhf (2.0.12-1+b1) ... Setting up libnl-route-3-200:armhf (3.4.0-1+b1) ... Setting up libsliplu1:armhf (1:5.8.1+dfsg-2) ... Setting up libcamd2:armhf (1:5.8.1+dfsg-2) ... Setting up libmongoose2:armhf (1:5.8.1+dfsg-2) ... Setting up libxml2-dev:armhf (2.9.10+dfsg-6.7) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up liblapack-dev:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libboost-timer1.74-dev:armhf (1.74.0-9) ... Setting up ocl-icd-opencl-dev:armhf (2.2.14-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:armhf (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:armhf (1.74.0-9) ... Setting up libnl-3-dev:armhf (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:armhf (1:5.8.1+dfsg-2) ... Setting up libccolamd2:armhf (1:5.8.1+dfsg-2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:armhf (7.74.0-1.3+b1) ... Setting up libx11-6:armhf (2:1.7.1-1) ... Setting up libsuperlu-dev:armhf (5.2.2+dfsg1-2) ... Setting up libbasix-dev:armhf (0.0.1~git20210122.4f10ef2-2) ... Setting up libfftw3-dev:armhf (3.3.8-2) ... Setting up libcholmod3:armhf (1:5.8.1+dfsg-2) ... Setting up libboost-timer-dev:armhf (1.74.0.3) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:armhf (1:5.8.1+dfsg-2) ... Setting up libibverbs1:armhf (33.2-1) ... Setting up libarpack2-dev:armhf (3.8.0-1) ... Setting up ibverbs-providers:armhf (33.2-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:armhf (460.73.01-1) ... Setting up libboost-iostreams1.74-dev:armhf (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:armhf (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:armhf (1.74.0-9) ... Setting up libltdl-dev:armhf (2.4.6-15) ... Setting up libumfpack5:armhf (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:armhf (1.74.0.3) ... Setting up cmake (3.18.4-2) ... Setting up libboost-thread1.74-dev:armhf (1.74.0-9) ... Setting up libhwloc-dev:armhf (2.4.1+dfsg-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:armhf (1.74.0.3) ... Setting up librdmacm1:armhf (33.2-1) ... Setting up libsuitesparse-dev:armhf (1:5.8.1+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libboost-iostreams-dev:armhf (1.74.0.3) ... Setting up libibverbs-dev:armhf (33.2-1) ... Setting up libhwloc-plugins:armhf (2.4.1+dfsg-1) ... Setting up libpetsc3.14-dev-common (3.14.5+dfsg1-4) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-cffi-backend:armhf (1.14.5-1) ... Setting up python3-basix (0.0.1~git20210122.4f10ef2-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-sympy (1.7.1-3) ... Setting up libpmix2:armhf (4.0.0-4) ... Setting up libopenmpi3:armhf (4.1.0-10) ... Setting up python3-ply (3.11-4) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libptscotch-6.1:armhf (6.1.0-2) ... Setting up libfftw3-mpi3:armhf (3.3.8-2) ... Setting up python3-pycparser (2.20-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libpmix-dev:armhf (4.0.0-4) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:armhf (1.10.6+repack-4) ... Setting up python3-fiat (2019.2.0~git20210116.0439689-2) ... Setting up libparpack2:armhf (3.8.0-1) ... Setting up libcombblas1.16.0:armhf (1.6.2-6) ... Setting up python3-ufl (2019.2.0~git20210211.d60cd09-1) ... Setting up python3-cffi (1.14.5-1) ... Setting up libfftw3-mpi-dev:armhf (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up python3-ffcx (2019.2.0~git20210122.22ca4c0-2) ... Setting up libhdf5-openmpi-fortran-102:armhf (1.10.6+repack-4) ... Setting up libhdf5-openmpi-hl-100:armhf (1.10.6+repack-4) ... Setting up libsuperlu-dist6:armhf (6.2.0+dfsg1-3) ... Setting up libopenmpi-dev:armhf (4.1.0-10) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libhdf5-openmpi-cpp-103-1:armhf (1.10.6+repack-4) ... Setting up libhdf5-openmpi-hl-cpp-100:armhf (1.10.6+repack-4) ... Setting up libhdf5-openmpi-hl-fortran-100:armhf (1.10.6+repack-4) ... Setting up libscalapack-openmpi2.1:armhf (2.1.0-4) ... Setting up libhypre:armhf (2.18.2-1) ... Setting up libsuperlu-dist-dev:armhf (6.2.0+dfsg1-3) ... Setting up libscalapack-openmpi-dev:armhf (2.1.0-4) ... Setting up libmumps-5.3:armhf (5.3.5-2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev:armhf (2.1.0-4) ... Setting up libhdf5-openmpi-dev (1.10.6+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:armhf (5.3.5-2) ... Setting up libscotch-dev (6.1.0-2) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libparpack2-dev:armhf (3.8.0-1) ... Setting up libpetsc-real3.14:armhf (3.14.5+dfsg1-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/libpetsc_real.so.3.14.5 to provide /usr/lib/arm-linux-gnueabihf/libpetsc.so.3.14 (libpetsc.so.3.14) in auto mode Setting up libhypre-dev:armhf (2.18.2-1) ... Setting up libptscotch-dev (6.1.0-2) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.6+repack-4) ... Setting up libslepc-real3.14 (3.14.2+dfsg1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/libslepc_real.so.3.14.2 to provide /usr/lib/arm-linux-gnueabihf/libslepc.so.3.14 (libslepc.so.3.14) in auto mode Setting up libdolfinx-real2019.2:armhf (2019.2.0~git20210130.c14cb0a-5) ... Setting up libpetsc-real3.14-dev:armhf (3.14.5+dfsg1-4) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/libpetsc_real.so.3.14.5 to provide /usr/lib/arm-linux-gnueabihf/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real to provide /usr/lib/petscdir/3.14 (petsc3.14) in auto mode Setting up libslepc-real3.14-dev (3.14.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/libslepc_real.so.3.14.2 to provide /usr/lib/arm-linux-gnueabihf/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real to provide /usr/lib/slepcdir/3.14 (slepc3.14) in auto mode Setting up libdolfinx-real-dev:armhf (2019.2.0~git20210130.c14cb0a-5) ... Setting up libdolfinx-dev (2019.2.0~git20210130.c14cb0a-5) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl The following NEW packages will be installed: libfile-find-rule-perl libnumber-compare-perl libtext-glob-perl usrmerge 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. Need to get 59.5 kB of archives. After this operation, 157 kB of additional disk space will be used. Get:1 http://deb.debian.org/debian bullseye/main armhf libnumber-compare-perl all 0.03-1.1 [6956 B] Get:2 http://deb.debian.org/debian bullseye/main armhf libtext-glob-perl all 0.11-1 [8888 B] Get:3 http://deb.debian.org/debian bullseye/main armhf libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:4 http://deb.debian.org/debian bullseye/main armhf usrmerge all 25 [13.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.5 kB in 1s (84.9 kB/s) Selecting previously unselected package libnumber-compare-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54128 files and directories currently installed.) Preparing to unpack .../libnumber-compare-perl_0.03-1.1_all.deb ... Unpacking libnumber-compare-perl (0.03-1.1) ... Selecting previously unselected package libtext-glob-perl. Preparing to unpack .../libtext-glob-perl_0.11-1_all.deb ... Unpacking libtext-glob-perl (0.11-1) ... Selecting previously unselected package libfile-find-rule-perl. Preparing to unpack .../libfile-find-rule-perl_0.34-1_all.deb ... Unpacking libfile-find-rule-perl (0.34-1) ... Selecting previously unselected package usrmerge. Preparing to unpack .../archives/usrmerge_25_all.deb ... Unpacking usrmerge (25) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up usrmerge (25) ... The system has been successfully converted. Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. I: Building the package hostname: Name or service not known I: Running cd /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.0~git20210119.80e82ac-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_configure -O--buildsystem=cmake -O--sourcedirectory=src cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ../src -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /usr/share/dolfinx/cmake/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/share/dolfinx/cmake/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found Boost 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/arm-linux-gnueabihf/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-arm-linux-gnueabihf && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' [ 11%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Poisson.ufl [ 22%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Elasticity.ufl cd "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". Scanning dependencies of target dolfinx-scaling-test make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/build make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' [ 33%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o [ 44%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/main.cpp" /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/mesh.cpp" [ 55%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o [ 66%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/elasticity_problem.cpp" /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/Elasticity.c" [ 77%] Building CXX object CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -std=c++17 -o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/poisson_problem.cpp" [ 88%] Building C object CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -isystem /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -c "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/Poisson.c" In file included from /usr/include/dolfinx/fem/Function.h:10, from /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/poisson_problem.h:9, from /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/poisson_problem.cpp:7: /usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(dolfinx::fem::Function&, const std::function(const Eigen::Ref >&)>&) [with T = double]': /usr/include/dolfinx/fem/interpolate.h:273:27: note: parameter passing for argument of type 'tcb::span' changed in GCC 7.1 273 | element->interpolate(_vals, cell_info[c], _coeffs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h:273:27: note: parameter passing for argument of type 'tcb::span' changed in GCC 7.1 In file included from /usr/include/dolfinx/fem/Function.h:10, from /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/elasticity_problem.h:9, from /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/elasticity_problem.cpp:7: /usr/include/dolfinx/fem/interpolate.h: In function 'void dolfinx::fem::interpolate(dolfinx::fem::Function&, const std::function(const Eigen::Ref >&)>&) [with T = double]': /usr/include/dolfinx/fem/interpolate.h:273:27: note: parameter passing for argument of type 'tcb::span' changed in GCC 7.1 273 | element->interpolate(_vals, cell_info[c], _coeffs); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/dolfinx/fem/interpolate.h:273:27: note: parameter passing for argument of type 'tcb::span' changed in GCC 7.1 [100%] Linking CXX executable dolfinx-scaling-test /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfinx-scaling-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -pthread CMakeFiles/dolfinx-scaling-test.dir/main.cpp.o CMakeFiles/dolfinx-scaling-test.dir/mesh.cpp.o CMakeFiles/dolfinx-scaling-test.dir/elasticity_problem.cpp.o CMakeFiles/dolfinx-scaling-test.dir/poisson_problem.cpp.o CMakeFiles/dolfinx-scaling-test.dir/Elasticity.c.o CMakeFiles/dolfinx-scaling-test.dir/Poisson.c.o -o dolfinx-scaling-test -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/openmpi/lib:/usr/lib/arm-linux-gnueabihf/hdf5/openmpi:/usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/lib:/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib: /usr/lib/arm-linux-gnueabihf/libdolfinx_real.so.2019.2.9.99 /usr/lib/arm-linux-gnueabihf/libboost_program_options.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libbasix.so /usr/lib/arm-linux-gnueabihf/libboost_timer.so.1.74.0 /usr/lib/arm-linux-gnueabihf/libboost_chrono.so.1.74.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/hdf5/openmpi/libhdf5.so /usr/lib/arm-linux-gnueabihf/libsz.so /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libdl.so /usr/lib/arm-linux-gnueabihf/libm.so /usr/lib/slepcdir/slepc3.14/arm-linux-gnueabihf-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib/libpetsc_real.so make[3]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf ==== elasticity weak scaling (6 processes with ndofs=10000) ==== UnitCube (27x22x30) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: weak Num processes: 6 Num cells 106920 Total degrees of freedom: 59892 Average degrees of freedom per process: 9982 ---------------------------------------------------------------- KSP Object: 6 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 6 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39873 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 6 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 6 MPI processes type: bjacobi number of blocks = 6 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.40013 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=438, cols=438, bs=6 package used to perform factorization: petsc total: nonzeros=161244, allocated nonzeros=161244 using I-node routines: found 135 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=438, cols=438, bs=6 total: nonzeros=115164, allocated nonzeros=115164 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 146 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=438, cols=438, bs=6 total: nonzeros=115164, allocated nonzeros=115164 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 146 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 6 MPI processes type: chebyshev eigenvalue estimates used: min = 0.181048, max = 1.99153 eigenvalues estimate via cg min 0.0300182, max 1.81048 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 6 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 6 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=4860, cols=4860, bs=6 total: nonzeros=896760, allocated nonzeros=896760 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 224 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 6 MPI processes type: chebyshev eigenvalue estimates used: min = 0.268473, max = 2.9532 eigenvalues estimate via cg min 0.0505135, max 2.68473 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 6 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 6 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=59892, cols=59892, bs=3 total: nonzeros=2537874, allocated nonzeros=2537874 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3313 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=59892, cols=59892, bs=3 total: nonzeros=2537874, allocated nonzeros=2537874 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3313 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 52.648450 52.648450 Build dofmap data | 2 1.382394 2.764788 Build sparsity | 1 0.910588 0.910588 Compute SCOTCH graph re-ordering | 2 0.053648 0.107296 Compute dof reordering map | 2 0.258654 0.517307 Compute entities of dim = 1 | 1 5.519796 5.519796 Compute entities of dim = 2 | 1 4.515239 4.515239 Compute graph partition (SCOTCH) | 1 46.321329 46.321329 Compute local part of mesh dual graph | 1 0.448825 0.448825 Compute local-to-local map | 1 0.034155 0.034155 Compute non-local part of mesh dual graph | 1 0.362399 0.362399 Compute-local-to-global links for global/local adjacency list | 1 0.007545 0.007545 Distribute in graph creation AdjacencyList | 1 0.534291 0.534291 Extract partition boundaries from SCOTCH graph | 1 0.014367 0.014367 Fetch float data from remote processes | 1 0.275424 0.275424 Get SCOTCH graph data | 1 0.000029 0.000029 Init dofmap from element dofmap | 2 0.115089 0.230177 PETSc Krylov solver | 1 93.387329 93.387329 SCOTCH: call SCOTCH_dgraphBuild | 1 0.089868 0.089868 SCOTCH: call SCOTCH_dgraphHalo | 1 0.180859 0.180859 SCOTCH: call SCOTCH_dgraphPart | 1 45.973506 45.973506 SCOTCH: call SCOTCH_graphBuild | 2 0.000041 0.000081 SCOTCH: call SCOTCH_graphOrder | 2 0.051362 0.102723 SparsityPattern::assemble | 1 1.986346 1.986346 TOPOLOGY: Create sets | 1 0.432875 0.432875 ZZZ Assemble matrix | 1 6.691765 6.691765 ZZZ Assemble vector | 1 0.283402 0.283402 ZZZ Create Mesh | 1 52.657460 52.657460 ZZZ Create RHS function | 1 1.724269 1.724269 ZZZ Create boundary conditions | 1 1.017387 1.017387 ZZZ Create forms | 1 0.004973 0.004973 ZZZ Create mesh entity permutations | 1 10.353389 10.353389 ZZZ Create near-nullspace | 1 2.420864 2.420864 ZZZ FunctionSpace | 1 1.525363 1.525363 ZZZ Solve | 1 93.610615 93.610615 *** Number of Krylov iterations: 17 *** Solution norm: 5.20307e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 6 processors, by pbuilder2 Wed Jul 28 08:09:16 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.748e+02 1.000 1.748e+02 Objects: 3.780e+02 1.005 3.763e+02 Flop: 2.443e+08 1.120 2.263e+08 1.358e+09 Flop/sec: 1.398e+06 1.120 1.295e+06 7.769e+06 MPI Messages: 1.916e+03 1.636 1.559e+03 9.352e+03 MPI Message Lengths: 1.230e+07 1.804 5.806e+03 5.430e+07 MPI Reductions: 6.510e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.7479e+02 100.0% 1.3580e+09 100.0% 9.352e+03 100.0% 5.806e+03 100.0% 6.440e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.7955e+01 3.5 0.00e+00 0.0 5.2e+02 4.0e+00 9.5e+01 7 0 6 0 15 7 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.6688e+01 4.4 0.00e+00 0.0 2.7e+02 5.9e+04 7.6e+01 7 0 3 29 12 7 0 3 29 12 0 MatMult 201 1.0 8.7384e+00 1.2 1.23e+08 1.1 4.8e+03 4.0e+03 0.0e+00 5 52 52 35 0 5 52 52 35 0 81 MatMultAdd 36 1.0 2.3853e+00 2.6 9.16e+06 1.1 5.2e+02 1.2e+03 0.0e+00 1 4 6 1 0 1 4 6 1 0 22 MatMultTranspose 36 1.0 1.1760e+00 1.2 9.17e+06 1.1 5.2e+02 1.2e+03 0.0e+00 1 4 6 1 0 1 4 6 1 0 45 MatSolve 18 0.0 3.5159e-02 0.0 5.80e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 165 MatLUFactorSym 1 1.0 1.1598e-012060.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.1993e+00171329.8 3.76e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 31 MatScale 6 1.0 1.3470e-01 2.0 6.13e+05 1.1 4.8e+01 1.1e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 26 MatResidual 36 1.0 1.5294e+00 1.2 2.14e+07 1.1 8.6e+02 3.8e+03 0.0e+00 1 9 9 6 0 1 9 9 6 0 81 MatAssemblyBegin 41 1.0 1.4734e+01 5.7 0.00e+00 0.0 2.7e+02 5.9e+04 1.6e+01 6 0 3 29 2 6 0 3 29 2 0 MatAssemblyEnd 41 1.0 7.8885e+00 1.0 1.53e+05 2.3 5.8e+02 3.9e+02 7.0e+01 4 0 6 0 11 4 0 6 0 11 0 MatGetRowIJ 1 0.0 1.1305e-03 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.8079e+00 1.0 0.00e+00 0.0 3.5e+01 3.5e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 2.7014e-03 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 7.6398e-01 1.1 0.00e+00 0.0 3.4e+02 7.9e+02 8.0e+00 0 0 4 0 1 0 0 4 0 1 0 MatZeroEntries 2 1.0 1.6334e-0235.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.7593e-01 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 2.9472e-01 1.5 6.59e+04 1.2 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 1 MatTranspose 4 1.0 1.9051e-01 4.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 6.2877e+00 1.5 0.00e+00 0.0 2.4e+02 7.0e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 1.0693e+00 1.1 6.96e+06 1.2 4.8e+01 2.2e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 38 MatPtAPSymbolic 2 1.0 2.2886e+01 1.0 0.00e+00 0.0 2.9e+02 3.5e+04 1.4e+01 13 0 3 19 2 13 0 3 19 2 0 MatPtAPNumeric 2 1.0 2.4525e+01 1.0 6.59e+07 1.3 2.1e+02 4.4e+04 1.2e+01 14 27 2 17 2 14 27 2 17 2 15 MatTrnMatMultSym 1 1.0 1.4719e+00 1.0 0.00e+00 0.0 1.7e+02 2.0e+04 1.3e+01 1 0 2 6 2 1 0 2 6 2 0 MatGetLocalMat 7 1.0 1.0849e-01 2.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.4399e+00 1.3 0.00e+00 0.0 3.4e+02 3.2e+04 0.0e+00 1 0 4 20 0 1 0 4 20 0 0 VecDot 36 1.0 1.0907e+00 1.1 7.47e+05 1.1 0.0e+00 0.0e+00 3.6e+01 1 0 0 0 6 1 0 0 0 6 4 VecMDot 20 1.0 1.3411e+00 1.5 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 5 VecTDot 76 1.0 2.9863e+00 1.2 1.18e+06 1.1 0.0e+00 0.0e+00 7.6e+01 2 1 0 0 12 2 1 0 0 12 2 VecNorm 69 1.0 3.3108e+00 1.4 1.02e+06 1.1 0.0e+00 0.0e+00 6.9e+01 2 0 0 0 11 2 0 0 0 11 2 VecScale 28 1.0 1.1958e-03 1.2 1.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 896 VecCopy 122 1.0 4.4138e-03 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 188 1.0 2.2741e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 85 1.0 9.1505e-03 1.7 1.37e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 860 VecAYPX 250 1.0 4.4111e-02 3.9 2.16e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 281 VecAXPBYCZ 72 1.0 1.6499e-02 3.1 2.03e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 706 VecMAXPY 22 1.0 5.4163e-03 1.2 1.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1554 VecAssemblyBegin 61 1.0 2.8118e+00 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 1 0 0 0 9 1 0 0 0 9 0 VecAssemblyEnd 61 1.0 1.1664e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 188 1.0 3.5069e-02 4.1 1.06e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 174 VecScatterBegin 340 1.0 5.4731e-02 2.3 0.00e+00 0.0 7.5e+03 3.1e+03 0.0e+00 0 0 80 42 0 0 0 80 42 0 0 VecScatterEnd 340 1.0 1.3346e+01 1.2 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 VecSetRandom 2 1.0 3.8970e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 1.5324e+00 1.2 5.59e+05 1.1 0.0e+00 0.0e+00 2.8e+01 1 0 0 0 4 1 0 0 0 4 2 SFSetGraph 19 1.0 3.0187e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 1.9426e+00 1.2 0.00e+00 0.0 7.8e+02 3.8e+02 1.9e+01 1 0 8 1 3 1 0 8 1 3 0 SFBcastOpBegin 313 1.0 5.0050e-02 2.5 0.00e+00 0.0 7.2e+03 3.1e+03 0.0e+00 0 0 76 41 0 0 0 76 41 0 0 SFBcastOpEnd 313 1.0 1.2548e+01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 7 0 0 0 0 7 0 0 0 0 0 SFReduceBegin 37 1.0 2.1618e-0216.3 0.00e+00 0.0 5.5e+02 1.3e+03 0.0e+00 0 0 6 1 0 0 0 6 1 0 0 SFReduceEnd 37 1.0 1.2253e+00 1.4 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFPack 350 1.0 3.4264e-02 6.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 350 1.0 2.4669e-03 1.5 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 35 KSPSetUp 7 1.0 3.1688e+00 1.0 1.32e+07 1.1 4.8e+02 3.8e+03 7.2e+01 2 6 5 3 11 2 6 5 3 11 24 KSPSolve 1 1.0 9.3128e+01 1.0 2.41e+08 1.1 9.1e+03 5.6e+03 5.5e+02 53 99 97 93 85 53 99 97 93 86 14 KSPGMRESOrthog 20 1.0 1.3464e+00 1.5 2.48e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 11 PCGAMGGraph_AGG 2 1.0 6.2646e+00 1.0 6.46e+05 1.1 2.4e+02 4.4e+02 3.8e+01 4 0 3 0 6 4 0 3 0 6 1 PCGAMGCoarse_AGG 2 1.0 2.6150e+00 1.0 0.00e+00 0.0 6.2e+02 6.4e+03 2.9e+01 1 0 7 7 4 1 0 7 7 5 0 PCGAMGProl_AGG 2 1.0 1.1787e+01 1.0 0.00e+00 0.0 1.5e+03 1.6e+03 1.9e+02 7 0 16 4 29 7 0 16 4 29 0 PCGAMGPOpt_AGG 2 1.0 8.2958e+00 1.0 2.23e+07 1.1 7.7e+02 6.0e+03 8.2e+01 5 10 8 8 13 5 10 8 8 13 16 GAMG: createProl 2 1.0 2.8745e+01 1.0 2.30e+07 1.1 3.1e+03 3.6e+03 3.4e+02 16 10 33 21 52 16 10 33 21 52 5 Graph 4 1.0 6.2638e+00 1.0 6.46e+05 1.1 2.4e+02 4.4e+02 3.8e+01 4 0 3 0 6 4 0 3 0 6 1 MIS/Agg 2 1.0 7.6417e-01 1.1 0.00e+00 0.0 3.4e+02 7.9e+02 8.0e+00 0 0 4 0 1 0 0 4 0 1 0 SA: col data 2 1.0 9.8907e+00 1.0 0.00e+00 0.0 1.3e+03 1.4e+03 1.7e+02 6 0 14 3 26 6 0 14 3 26 0 SA: frmProl0 2 1.0 1.5071e+00 1.1 0.00e+00 0.0 1.4e+02 4.3e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 4.1458e+00 1.0 7.54e+06 1.2 2.9e+02 9.5e+03 2.8e+01 2 3 3 5 4 2 3 3 5 4 10 GAMG: partLevel 2 1.0 4.9443e+01 1.0 6.59e+07 1.3 5.7e+02 3.7e+04 8.1e+01 28 27 6 38 12 28 27 6 38 13 7 repartition 1 1.0 2.5369e+00 1.0 0.00e+00 0.0 6.8e+01 1.9e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 1.9187e-01 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 9.4461e-01 1.0 0.00e+00 0.0 2.5e+01 5.0e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 9.4288e-01 1.0 0.00e+00 0.0 1.0e+01 4.5e+02 1.7e+01 1 0 0 0 3 1 0 0 0 3 0 PCSetUp 2 1.0 8.2942e+01 1.0 1.23e+08 1.3 4.2e+03 8.1e+03 5.0e+02 47 45 45 62 77 47 45 45 62 77 7 PCSetUpOnBlocks 18 1.0 1.3185e+002631.3 3.76e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 29 PCApply 40 1.0 9.1856e+00 1.1 1.40e+08 1.4 4.5e+03 3.2e+03 4.0e+00 5 49 48 27 1 5 49 48 27 1 72 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 22629684 0. Matrix Coarsen 2 2 752 0. Matrix Null Space 1 1 440 0. Index Set 55 55 83292 0. IS L to G Mapping 6 6 81620 0. Vec Scatter 17 17 8024 0. Vector 185 185 4221588 0. Star Forest Graph 19 19 13300 0. Krylov Solver 9 9 66856 0. Preconditioner 9 9 5736 0. Viewer 3 2 1088 0. PetscRandom 4 4 1624 0. ======================================================================================================================== Average time to get PetscTime(): 4.083e-07 Average time for MPI_Barrier(): 0.0144085 Average time for zero size MPI_Send(): 0.00398686 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-armmp-lpae-armv7l-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lpthread -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak ==== elasticity strong scaling (6 processes with ndofs=60000) ==== UnitCube (27x22x30) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: strong Num processes: 6 Num cells 106920 Total degrees of freedom: 59892 Average degrees of freedom per process: 9982 ---------------------------------------------------------------- KSP Object: 6 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 6 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39873 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 6 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 6 MPI processes type: bjacobi number of blocks = 6 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.40013 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=438, cols=438, bs=6 package used to perform factorization: petsc total: nonzeros=161244, allocated nonzeros=161244 using I-node routines: found 135 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=438, cols=438, bs=6 total: nonzeros=115164, allocated nonzeros=115164 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 146 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=438, cols=438, bs=6 total: nonzeros=115164, allocated nonzeros=115164 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 146 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 6 MPI processes type: chebyshev eigenvalue estimates used: min = 0.181048, max = 1.99153 eigenvalues estimate via cg min 0.0300182, max 1.81048 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 6 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 6 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=4860, cols=4860, bs=6 total: nonzeros=896760, allocated nonzeros=896760 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 224 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 6 MPI processes type: chebyshev eigenvalue estimates used: min = 0.268473, max = 2.9532 eigenvalues estimate via cg min 0.0505135, max 2.68473 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 6 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 6 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=59892, cols=59892, bs=3 total: nonzeros=2537874, allocated nonzeros=2537874 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3313 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=59892, cols=59892, bs=3 total: nonzeros=2537874, allocated nonzeros=2537874 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3313 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 25.302225 25.302225 Build dofmap data | 2 0.660628 1.321257 Build sparsity | 1 0.819635 0.819635 Compute SCOTCH graph re-ordering | 2 0.026668 0.053336 Compute dof reordering map | 2 0.156516 0.313032 Compute entities of dim = 1 | 1 2.842049 2.842049 Compute entities of dim = 2 | 1 2.211763 2.211763 Compute graph partition (SCOTCH) | 1 22.092357 22.092357 Compute local part of mesh dual graph | 1 0.359608 0.359608 Compute local-to-local map | 1 0.027091 0.027091 Compute non-local part of mesh dual graph | 1 0.415968 0.415968 Compute-local-to-global links for global/local adjacency list | 1 0.003959 0.003959 Distribute in graph creation AdjacencyList | 1 0.206209 0.206209 Extract partition boundaries from SCOTCH graph | 1 0.017002 0.017002 Fetch float data from remote processes | 1 0.202252 0.202252 Get SCOTCH graph data | 1 0.000038 0.000038 Init dofmap from element dofmap | 2 0.100032 0.200064 PETSc Krylov solver | 1 88.983675 88.983675 SCOTCH: call SCOTCH_dgraphBuild | 1 0.079251 0.079251 SCOTCH: call SCOTCH_dgraphHalo | 1 0.066806 0.066806 SCOTCH: call SCOTCH_dgraphPart | 1 21.902907 21.902907 SCOTCH: call SCOTCH_graphBuild | 2 0.000047 0.000094 SCOTCH: call SCOTCH_graphOrder | 2 0.026167 0.052335 SparsityPattern::assemble | 1 0.701951 0.701951 TOPOLOGY: Create sets | 1 0.175615 0.175615 ZZZ Assemble matrix | 1 4.845447 4.845447 ZZZ Assemble vector | 1 0.263642 0.263642 ZZZ Create Mesh | 1 25.304948 25.304948 ZZZ Create RHS function | 1 1.156312 1.156312 ZZZ Create boundary conditions | 1 0.809692 0.809692 ZZZ Create forms | 1 0.000293 0.000293 ZZZ Create mesh entity permutations | 1 5.291304 5.291304 ZZZ Create near-nullspace | 1 2.211273 2.211273 ZZZ FunctionSpace | 1 0.690108 0.690108 ZZZ Solve | 1 89.186889 89.186889 *** Number of Krylov iterations: 17 *** Solution norm: 5.20307e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 6 processors, by pbuilder2 Wed Jul 28 08:13:40 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.321e+02 1.000 1.320e+02 Objects: 3.780e+02 1.005 3.763e+02 Flop: 2.443e+08 1.120 2.263e+08 1.358e+09 Flop/sec: 1.850e+06 1.120 1.714e+06 1.028e+07 MPI Messages: 1.916e+03 1.636 1.559e+03 9.352e+03 MPI Message Lengths: 1.230e+07 1.804 5.806e+03 5.430e+07 MPI Reductions: 6.510e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.3204e+02 100.0% 1.3580e+09 100.0% 9.352e+03 100.0% 5.806e+03 100.0% 6.440e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 2.0227e+01 2.1 0.00e+00 0.0 5.2e+02 4.0e+00 9.5e+01 11 0 6 0 15 11 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.8667e+01 2.4 0.00e+00 0.0 2.7e+02 5.9e+04 7.6e+01 10 0 3 29 12 10 0 3 29 12 0 MatMult 201 1.0 7.6653e+00 1.2 1.23e+08 1.1 4.8e+03 4.0e+03 0.0e+00 5 52 52 35 0 5 52 52 35 0 93 MatMultAdd 36 1.0 2.0889e+00 2.9 9.16e+06 1.1 5.2e+02 1.2e+03 0.0e+00 1 4 6 1 0 1 4 6 1 0 25 MatMultTranspose 36 1.0 1.1899e+00 1.2 9.17e+06 1.1 5.2e+02 1.2e+03 0.0e+00 1 4 6 1 0 1 4 6 1 0 44 MatSolve 18 0.0 9.0932e-02 0.0 5.80e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 64 MatLUFactorSym 1 1.0 1.1584e-012068.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.2445e+00158025.9 3.76e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 30 MatScale 6 1.0 1.9482e-01 1.9 6.13e+05 1.1 4.8e+01 1.1e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 18 MatResidual 36 1.0 1.2578e+00 1.2 2.14e+07 1.1 8.6e+02 3.8e+03 0.0e+00 1 9 9 6 0 1 9 9 6 0 98 MatAssemblyBegin 41 1.0 1.2145e+01 2.7 0.00e+00 0.0 2.7e+02 5.9e+04 1.6e+01 6 0 3 29 2 6 0 3 29 2 0 MatAssemblyEnd 41 1.0 9.6762e+00 1.1 1.53e+05 2.3 5.8e+02 3.9e+02 7.0e+01 7 0 6 0 11 7 0 6 0 11 0 MatGetRowIJ 1 0.0 1.1778e-03 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 1.3361e+00 1.0 0.00e+00 0.0 3.5e+01 3.5e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 2.7717e-03 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 1.3531e+00 1.1 0.00e+00 0.0 3.4e+02 7.9e+02 8.0e+00 1 0 4 0 1 1 0 4 0 1 0 MatZeroEntries 2 1.0 4.3454e-02109.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 1.4939e-01 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 3.8683e-01 2.8 6.59e+04 1.2 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 1 MatTranspose 4 1.0 1.6657e-01 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 4.4100e+00 1.1 0.00e+00 0.0 2.4e+02 7.0e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 1.1514e+00 1.1 6.96e+06 1.2 4.8e+01 2.2e+04 2.0e+00 1 3 1 2 0 1 3 1 2 0 35 MatPtAPSymbolic 2 1.0 1.1853e+01 1.0 0.00e+00 0.0 2.9e+02 3.5e+04 1.4e+01 9 0 3 19 2 9 0 3 19 2 0 MatPtAPNumeric 2 1.0 1.5952e+01 1.0 6.59e+07 1.3 2.1e+02 4.4e+04 1.2e+01 12 27 2 17 2 12 27 2 17 2 23 MatTrnMatMultSym 1 1.0 1.2875e+00 1.0 0.00e+00 0.0 1.7e+02 2.0e+04 1.3e+01 1 0 2 6 2 1 0 2 6 2 0 MatGetLocalMat 7 1.0 1.0380e-01 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 2.3453e+00 1.5 0.00e+00 0.0 3.4e+02 3.2e+04 0.0e+00 1 0 4 20 0 1 0 4 20 0 0 VecDot 36 1.0 1.0160e+00 1.1 7.47e+05 1.1 0.0e+00 0.0e+00 3.6e+01 1 0 0 0 6 1 0 0 0 6 4 VecMDot 20 1.0 2.0433e+00 1.7 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 3 VecTDot 76 1.0 1.9634e+00 1.3 1.18e+06 1.1 0.0e+00 0.0e+00 7.6e+01 1 1 0 0 12 1 1 0 0 12 3 VecNorm 69 1.0 3.4596e+00 1.6 1.02e+06 1.1 0.0e+00 0.0e+00 6.9e+01 2 0 0 0 11 2 0 0 0 11 2 VecScale 28 1.0 1.1626e-02 9.8 1.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 92 VecCopy 122 1.0 3.9416e-03 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 188 1.0 2.3298e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 85 1.0 1.2794e-02 1.6 1.37e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 615 VecAYPX 250 1.0 4.4162e-02 1.9 2.16e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 281 VecAXPBYCZ 72 1.0 4.1525e-02 3.5 2.03e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 281 VecMAXPY 22 1.0 3.3415e-02 2.5 1.47e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 252 VecAssemblyBegin 61 1.0 7.0467e+00 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 4 0 0 0 9 4 0 0 0 9 0 VecAssemblyEnd 61 1.0 1.0593e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 188 1.0 2.5536e-02 1.6 1.06e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 238 VecScatterBegin 340 1.0 5.4724e-02 1.8 0.00e+00 0.0 7.5e+03 3.1e+03 0.0e+00 0 0 80 42 0 0 0 80 42 0 0 VecScatterEnd 340 1.0 1.3217e+01 1.1 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 9 0 0 0 0 9 0 0 0 0 0 VecSetRandom 2 1.0 2.0172e-02 5.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 2.4090e+00 1.9 5.59e+05 1.1 0.0e+00 0.0e+00 2.8e+01 1 0 0 0 4 1 0 0 0 4 1 SFSetGraph 19 1.0 3.0626e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 2.5850e+00 1.3 0.00e+00 0.0 7.8e+02 3.8e+02 1.9e+01 2 0 8 1 3 2 0 8 1 3 0 SFBcastOpBegin 313 1.0 4.9752e-02 2.2 0.00e+00 0.0 7.2e+03 3.1e+03 0.0e+00 0 0 76 41 0 0 0 76 41 0 0 SFBcastOpEnd 313 1.0 1.3271e+01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 9 0 0 0 0 9 0 0 0 0 0 SFReduceBegin 37 1.0 2.3584e-03 1.5 0.00e+00 0.0 5.5e+02 1.3e+03 0.0e+00 0 0 6 1 0 0 0 6 1 0 0 SFReduceEnd 37 1.0 8.4545e-01 1.3 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFPack 350 1.0 3.0777e-02 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 350 1.0 2.6431e-03 1.5 2.73e+04 3.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 33 KSPSetUp 7 1.0 2.0609e+00 1.0 1.32e+07 1.1 4.8e+02 3.8e+03 7.2e+01 2 6 5 3 11 2 6 5 3 11 37 KSPSolve 1 1.0 8.8732e+01 1.0 2.41e+08 1.1 9.1e+03 5.6e+03 5.5e+02 67 99 97 93 85 67 99 97 93 86 15 KSPGMRESOrthog 20 1.0 2.0557e+00 1.7 2.48e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 7 PCGAMGGraph_AGG 2 1.0 8.6326e+00 1.0 6.46e+05 1.1 2.4e+02 4.4e+02 3.8e+01 7 0 3 0 6 7 0 3 0 6 0 PCGAMGCoarse_AGG 2 1.0 3.0336e+00 1.0 0.00e+00 0.0 6.2e+02 6.4e+03 2.9e+01 2 0 7 7 4 2 0 7 7 5 0 PCGAMGProl_AGG 2 1.0 2.4495e+01 1.0 0.00e+00 0.0 1.5e+03 1.6e+03 1.9e+02 18 0 16 4 29 18 0 16 4 29 0 PCGAMGPOpt_AGG 2 1.0 1.1372e+01 1.0 2.23e+07 1.1 7.7e+02 6.0e+03 8.2e+01 9 10 8 8 13 9 10 8 8 13 11 GAMG: createProl 2 1.0 4.7344e+01 1.0 2.30e+07 1.1 3.1e+03 3.6e+03 3.4e+02 36 10 33 21 52 36 10 33 21 52 3 Graph 4 1.0 8.6319e+00 1.0 6.46e+05 1.1 2.4e+02 4.4e+02 3.8e+01 7 0 3 0 6 7 0 3 0 6 0 MIS/Agg 2 1.0 1.3533e+00 1.1 0.00e+00 0.0 3.4e+02 7.9e+02 8.0e+00 1 0 4 0 1 1 0 4 0 1 0 SA: col data 2 1.0 2.1935e+01 1.0 0.00e+00 0.0 1.3e+03 1.4e+03 1.7e+02 17 0 14 3 26 17 0 14 3 26 0 SA: frmProl0 2 1.0 2.0030e+00 1.1 0.00e+00 0.0 1.4e+02 4.3e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 5.2879e+00 1.0 7.54e+06 1.2 2.9e+02 9.5e+03 2.8e+01 4 3 3 5 4 4 3 3 5 4 8 GAMG: partLevel 2 1.0 2.9595e+01 1.0 6.59e+07 1.3 5.7e+02 3.7e+04 8.1e+01 22 27 6 38 12 22 27 6 38 13 12 repartition 1 1.0 1.8299e+00 1.0 0.00e+00 0.0 6.8e+01 1.9e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 1.6769e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 9.1252e-01 1.0 0.00e+00 0.0 2.5e+01 5.0e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 4.9943e-01 1.0 0.00e+00 0.0 1.0e+01 4.5e+02 1.7e+01 0 0 0 0 3 0 0 0 0 3 0 PCSetUp 2 1.0 8.0491e+01 1.0 1.23e+08 1.3 4.2e+03 8.1e+03 5.0e+02 60 45 45 62 77 60 45 45 62 77 8 PCSetUpOnBlocks 18 1.0 1.3636e+002840.4 3.76e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 28 PCApply 40 1.0 7.8304e+00 1.0 1.40e+08 1.4 4.5e+03 3.2e+03 4.0e+00 6 49 48 27 1 6 49 48 27 1 85 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 22629684 0. Matrix Coarsen 2 2 752 0. Matrix Null Space 1 1 440 0. Index Set 55 55 83292 0. IS L to G Mapping 6 6 81620 0. Vec Scatter 17 17 8024 0. Vector 185 185 4221588 0. Star Forest Graph 19 19 13300 0. Krylov Solver 9 9 66856 0. Preconditioner 9 9 5736 0. Viewer 3 2 1088 0. PetscRandom 4 4 1624 0. ======================================================================================================================== Average time to get PetscTime(): 4.083e-07 Average time for MPI_Barrier(): 0.0174027 Average time for zero size MPI_Send(): 0.00388725 #PETSc Option Table entries: --ndofs 60000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-armmp-lpae-armv7l-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lpthread -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 60000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 60000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong ==== poisson weak scaling (6 processes with ndofs=10000) ==== UnitCube (39x34x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: weak Num processes: 6 Num cells 334152 Total degrees of freedom: 60200 Average degrees of freedom per process: 10033 ---------------------------------------------------------------- KSP Object: 6 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 6 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=60200, cols=60200 total: nonzeros=866470, allocated nonzeros=866470 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 43.152389 43.152389 Build dofmap data | 2 3.374936 6.749871 Build sparsity | 1 4.008728 4.008728 Compute SCOTCH graph re-ordering | 2 0.182478 0.364956 Compute connectivity 2-3 | 1 0.200824 0.200824 Compute dof reordering map | 2 1.119295 2.238590 Compute entities of dim = 1 | 1 6.720797 6.720797 Compute entities of dim = 2 | 1 25.763265 25.763265 Compute graph partition (SCOTCH) | 1 36.828356 36.828356 Compute local part of mesh dual graph | 1 1.391640 1.391640 Compute local-to-local map | 1 0.073486 0.073486 Compute non-local part of mesh dual graph | 1 0.867676 0.867676 Compute-local-to-global links for global/local adjacency list | 1 0.023692 0.023692 Distribute in graph creation AdjacencyList | 1 0.356956 0.356956 Extract partition boundaries from SCOTCH graph | 1 0.040692 0.040692 Fetch float data from remote processes | 1 0.240006 0.240006 Get SCOTCH graph data | 1 0.000033 0.000033 Init dofmap from element dofmap | 2 0.606646 1.213291 PETSc Krylov solver | 1 34.925746 34.925746 SCOTCH: call SCOTCH_dgraphBuild | 1 0.133219 0.133219 SCOTCH: call SCOTCH_dgraphHalo | 1 0.068118 0.068118 SCOTCH: call SCOTCH_dgraphPart | 1 36.522752 36.522752 SCOTCH: call SCOTCH_graphBuild | 2 0.000102 0.000205 SCOTCH: call SCOTCH_graphOrder | 2 0.174937 0.349874 SparsityPattern::assemble | 1 1.532807 1.532807 TOPOLOGY: Create sets | 1 0.502325 0.502325 ZZZ Assemble | 1 31.286033 31.286033 ZZZ Assemble matrix | 1 2.127165 2.127165 ZZZ Assemble vector | 1 0.472769 0.472769 ZZZ Create Mesh | 1 43.154407 43.154407 ZZZ Create mesh entity permutations | 1 34.358678 34.358678 ZZZ FunctionSpace | 1 5.572543 5.572543 ZZZ Solve | 1 35.096660 35.096660 *** Number of Krylov iterations: 7 *** Solution norm: 42925.6 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 6 processors, by pbuilder2 Wed Jul 28 08:17:59 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.497e+02 1.000 1.497e+02 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.598e+06 1.035 3.537e+06 2.122e+07 Flop/sec: 2.403e+04 1.035 2.363e+04 1.418e+05 MPI Messages: 9.000e+01 1.250 8.100e+01 4.860e+02 MPI Message Lengths: 4.620e+05 1.139 5.398e+03 2.624e+06 MPI Reductions: 6.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.4971e+02 100.0% 2.1223e+07 100.0% 4.860e+02 100.0% 5.398e+03 100.0% 5.900e+01 89.4% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 5.9252e-01 4.5 0.00e+00 0.0 1.1e+02 4.0e+00 4.0e+00 0 0 22 0 6 0 0 22 0 7 0 BuildTwoSidedF 1 1.0 4.6832e-0146.6 0.00e+00 0.0 5.2e+01 1.4e+04 1.0e+00 0 0 11 28 2 0 0 11 28 2 0 MatMult 7 1.0 1.8506e-01 1.5 1.99e+06 1.0 2.0e+02 3.4e+03 0.0e+00 0 55 40 25 0 0 55 40 25 0 63 MatConvert 1 1.0 6.3506e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 7 0 MatAssemblyBegin 2 1.0 5.5630e-01 7.1 0.00e+00 0.0 5.2e+01 1.4e+04 1.0e+00 0 0 11 28 2 0 0 11 28 2 0 MatAssemblyEnd 2 1.0 6.3610e-01 1.0 5.27e+03 1.2 5.6e+01 8.5e+02 9.0e+00 0 0 12 2 14 0 0 12 2 15 0 MatGetRowIJ 2 1.0 1.1958e-05 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 7.6242e-04 2.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 3.0181e-02 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 2 0 0 0 0 2 0 VecTDot 14 1.0 2.3480e-01 1.3 2.85e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 24 7 VecNorm 9 1.0 1.9202e-01 2.2 1.83e+05 1.0 0.0e+00 0.0e+00 9.0e+00 0 5 0 0 14 0 5 0 0 15 6 VecCopy 2 1.0 3.0946e-04 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 11 1.0 5.9354e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.3121e-03 1.7 2.85e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 729 VecAYPX 6 1.0 1.6333e-03 1.9 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 442 VecScatterBegin 10 1.0 1.7526e-03 1.4 0.00e+00 0.0 2.7e+02 2.8e+03 0.0e+00 0 0 56 29 0 0 0 56 29 0 0 VecScatterEnd 10 1.0 3.5130e-01 2.8 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 8.1667e-05 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.9072e-01 1.3 0.00e+00 0.0 1.6e+02 5.2e+02 3.0e+00 0 0 33 3 5 0 0 33 3 5 0 SFBcastOpBegin 9 1.0 1.5208e-03 1.4 0.00e+00 0.0 2.5e+02 3.0e+03 0.0e+00 0 0 51 28 0 0 0 51 28 0 0 SFBcastOpEnd 9 1.0 1.7229e-01 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 6.6500e-05 1.3 0.00e+00 0.0 2.6e+01 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 2.2176e-0111.7 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 10 1.0 7.5396e-04 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 10 1.0 1.5108e-04 1.7 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 29 KSPSetUp 1 1.0 6.8425e-04 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 3.4900e+01 1.0 2.84e+06 1.0 2.0e+02 3.4e+03 2.6e+01 23 79 40 25 39 23 79 40 25 44 0 PCSetUp 1 1.0 2.2905e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 15 0 0 0 6 15 0 0 0 7 0 PCApply 8 1.0 1.1548e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 8 0 0 0 0 8 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2112044 0. Index Set 6 6 15536 0. IS L to G Mapping 4 4 174536 0. Vec Scatter 3 3 1416 0. Vector 14 14 364272 0. Star Forest Graph 3 3 2100 0. Krylov Solver 1 1 968 0. Preconditioner 1 1 984 0. Viewer 2 1 544 0. ======================================================================================================================== Average time to get PetscTime(): 4.375e-07 Average time for MPI_Barrier(): 0.0143986 Average time for zero size MPI_Send(): 0.00266905 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-armmp-lpae-armv7l-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lpthread -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak ==== poisson strong scaling (6 processes with ndofs=60000) ==== UnitCube (39x34x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: strong Num processes: 6 Num cells 334152 Total degrees of freedom: 60200 Average degrees of freedom per process: 10033 ---------------------------------------------------------------- KSP Object: 6 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 6 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 6 MPI processes type: mpiaij rows=60200, cols=60200 total: nonzeros=866470, allocated nonzeros=866470 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 32.982433 32.982433 Build dofmap data | 2 1.093477 2.186954 Build sparsity | 1 2.057972 2.057972 Compute SCOTCH graph re-ordering | 2 0.060907 0.121814 Compute connectivity 2-3 | 1 0.024020 0.024020 Compute dof reordering map | 2 0.368232 0.736464 Compute entities of dim = 1 | 1 5.253790 5.253790 Compute entities of dim = 2 | 1 3.361060 3.361060 Compute graph partition (SCOTCH) | 1 28.325886 28.325886 Compute local part of mesh dual graph | 1 1.272112 1.272112 Compute local-to-local map | 1 0.045714 0.045714 Compute non-local part of mesh dual graph | 1 0.213879 0.213879 Compute-local-to-global links for global/local adjacency list | 1 0.019377 0.019377 Distribute in graph creation AdjacencyList | 1 0.164201 0.164201 Extract partition boundaries from SCOTCH graph | 1 0.036123 0.036123 Fetch float data from remote processes | 1 0.131752 0.131752 Get SCOTCH graph data | 1 0.000034 0.000034 Init dofmap from element dofmap | 2 0.191977 0.383955 PETSc Krylov solver | 1 33.034528 33.034528 SCOTCH: call SCOTCH_dgraphBuild | 1 0.050451 0.050451 SCOTCH: call SCOTCH_dgraphHalo | 1 0.140462 0.140462 SCOTCH: call SCOTCH_dgraphPart | 1 28.046399 28.046399 SCOTCH: call SCOTCH_graphBuild | 2 0.000113 0.000226 SCOTCH: call SCOTCH_graphOrder | 2 0.057369 0.114737 SparsityPattern::assemble | 1 1.059198 1.059198 TOPOLOGY: Create sets | 1 0.389871 0.389871 ZZZ Assemble | 1 10.589811 10.589811 ZZZ Assemble matrix | 1 1.763505 1.763505 ZZZ Assemble vector | 1 0.298372 0.298372 ZZZ Create Mesh | 1 32.984268 32.984268 ZZZ Create mesh entity permutations | 1 8.962731 8.962731 ZZZ FunctionSpace | 1 1.097136 1.097136 ZZZ Solve | 1 33.128645 33.128645 *** Number of Krylov iterations: 7 *** Solution norm: 42925.6 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf/dolfinx-scaling-test on a named i-capture-the-hostname with 6 processors, by pbuilder2 Wed Jul 28 08:20:13 2021 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 8.697e+01 1.000 8.697e+01 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.598e+06 1.035 3.537e+06 2.122e+07 Flop/sec: 4.137e+04 1.035 4.067e+04 2.440e+05 MPI Messages: 9.000e+01 1.250 8.100e+01 4.860e+02 MPI Message Lengths: 4.620e+05 1.139 5.398e+03 2.624e+06 MPI Reductions: 6.600e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 8.6968e+01 100.0% 2.1223e+07 100.0% 4.860e+02 100.0% 5.398e+03 100.0% 5.900e+01 89.4% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 7.7384e-0114.0 0.00e+00 0.0 1.1e+02 4.0e+00 4.0e+00 0 0 22 0 6 0 0 22 0 7 0 BuildTwoSidedF 1 1.0 7.0395e-0169.5 0.00e+00 0.0 5.2e+01 1.4e+04 1.0e+00 0 0 11 28 2 0 0 11 28 2 0 MatMult 7 1.0 1.9278e-01 1.5 1.99e+06 1.0 2.0e+02 3.4e+03 0.0e+00 0 55 40 25 0 0 55 40 25 0 61 MatConvert 1 1.0 2.3918e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 7 0 MatAssemblyBegin 2 1.0 7.2335e-01 8.4 0.00e+00 0.0 5.2e+01 1.4e+04 1.0e+00 0 0 11 28 2 0 0 11 28 2 0 MatAssemblyEnd 2 1.0 3.4018e-01 1.0 5.27e+03 1.2 5.6e+01 8.5e+02 9.0e+00 0 0 12 2 14 0 0 12 2 15 0 MatGetRowIJ 2 1.0 1.1084e-05 2.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 8.0150e-04 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 5.0130e-02 1.8 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 2 0 0 0 0 2 0 VecTDot 14 1.0 2.9867e-01 1.3 2.85e+05 1.0 0.0e+00 0.0e+00 1.4e+01 0 8 0 0 21 0 8 0 0 24 6 VecNorm 9 1.0 3.3256e-01 1.6 1.83e+05 1.0 0.0e+00 0.0e+00 9.0e+00 0 5 0 0 14 0 5 0 0 15 3 VecCopy 2 1.0 2.3159e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 11 1.0 5.8654e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 14 1.0 2.3538e-03 1.5 2.85e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 716 VecAYPX 6 1.0 1.6660e-03 1.8 1.22e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 434 VecScatterBegin 10 1.0 1.8188e-03 1.4 0.00e+00 0.0 2.7e+02 2.8e+03 0.0e+00 0 0 56 29 0 0 0 56 29 0 0 VecScatterEnd 10 1.0 3.3424e-01 2.4 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 8.7792e-05 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.1069e-01 1.5 0.00e+00 0.0 1.6e+02 5.2e+02 3.0e+00 0 0 33 3 5 0 0 33 3 5 0 SFBcastOpBegin 9 1.0 1.5779e-03 1.4 0.00e+00 0.0 2.5e+02 3.0e+03 0.0e+00 0 0 51 28 0 0 0 51 28 0 0 SFBcastOpEnd 9 1.0 1.8220e-01 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 7.3500e-05 1.5 0.00e+00 0.0 2.6e+01 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 1.6454e-0122.7 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 10 1.0 8.0617e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 10 1.0 1.6158e-04 1.7 7.81e+02 1.2 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 27 KSPSetUp 1 1.0 3.9638e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 3.2992e+01 1.0 2.84e+06 1.0 2.0e+02 3.4e+03 2.6e+01 38 79 40 25 39 38 79 40 25 44 1 PCSetUp 1 1.0 1.8652e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 21 0 0 0 6 21 0 0 0 7 0 PCApply 8 1.0 1.3693e+01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 16 0 0 0 0 16 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2112044 0. Index Set 6 6 15536 0. IS L to G Mapping 4 4 174536 0. Vec Scatter 3 3 1416 0. Vector 14 14 364272 0. Star Forest Graph 3 3 2100 0. Krylov Solver 1 1 968 0. Preconditioner 1 1 984 0. Viewer 2 1 544 0. ======================================================================================================================== Average time to get PetscTime(): 4.083e-07 Average time for MPI_Barrier(): 0.0167947 Average time for zero size MPI_Send(): 0.00333542 #PETSc Option Table entries: --ndofs 60000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 4 sizeof(void*) 4 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=arm-linux-gnueabihf --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real --PETSC_ARCH=arm-linux-gnueabihf-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-armmp-lpae-armv7l-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-ND57I8/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -L/usr/lib/petscdir/petsc3.14/arm-linux-gnueabihf-real/lib -lpetsc_real -L/usr/lib/arm-linux-gnueabihf/hdf5/openmpi -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -L/usr/lib/arm-linux-gnueabihf/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/arm-linux-gnueabihf/10 -L/usr/lib/arm-linux-gnueabihf -L/lib/arm-linux-gnueabihf -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lpthread -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 60000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 60000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-arm-linux-gnueabihf && make -j6 install DESTDIR=/build/fenicsx-performance-tests-0.0\~git20210119.80e82ac/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test -- Set runtime path of "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test" to "" make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dpkg-shlibdeps: warning: debian/fenicsx-performance-tests/usr/bin/dolfinx-scaling-test contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb'. dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_armhf.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/14601/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/14601/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14601 and its subdirectories I: Current time: Wed Jul 28 08:24:04 +14 2021 I: pbuilder-time-stamp: 1627410244