I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 9 04:34:01 +14 2024 I: pbuilder-time-stamp: 1704724441 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [gbrowse_2.56+dfsg-8.dsc] I: copying [./gbrowse_2.56+dfsg.orig.tar.gz] I: copying [./gbrowse_2.56+dfsg-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.b21GyGF1/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 16 11:23:44 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gbrowse_2.56+dfsg-8.dsc dpkg-source: info: extracting gbrowse in gbrowse-2.56+dfsg dpkg-source: info: unpacking gbrowse_2.56+dfsg.orig.tar.gz dpkg-source: info: unpacking gbrowse_2.56+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-packaging-patch dpkg-source: info: applying gbrowse-slave-fix_defaults_path dpkg-source: info: applying manpages.patch dpkg-source: info: applying fix_pop_url dpkg-source: info: applying skip_check_installed_test.patch dpkg-source: info: applying source_init_functions dpkg-source: info: applying init_script_dependency.patch dpkg-source: info: applying fix_runlevel.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_whatis_entry.patch dpkg-source: info: applying remove_copy_of_LoadHelper.pm.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/830/tmp/hooks/D01_modify_environment starting debug: Running on ff64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 8 14:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/830/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/830/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=6 ' DIRSTACK=() DISTRIBUTION=bullseye EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=b03f6afa74c9472b8fc0684061259889 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=830 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w7KZnDJT/pbuilderrc_PXZX --distribution bullseye --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w7KZnDJT/b2 --logfile b2/build.log gbrowse_2.56+dfsg-8.dsc' SUDO_GID=114 SUDO_UID=109 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-17-arm64 #1 SMP Debian 6.1.69-1 (2023-12-30) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Mar 27 2022 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 47492 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 124508 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 64212 Apr 10 2022 gzip -rwxr-xr-x 1 root root 13784 Nov 7 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jan 20 2022 more -rwsr-xr-x 1 root root 34400 Jan 20 2022 mount -rwxr-xr-x 1 root root 9824 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 9 Jan 8 14:35 sh -> /bin/bash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jan 20 2022 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jan 20 2022 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/830/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bioperl, debhelper-compat (= 12), dh-apache2, dh-exec, apache2-dev, libbio-graphics-perl, libbio-coordinate-perl, libbio-db-seqfeature-perl, libcapture-tiny-perl, libcgi-session-perl, libgd-gd2-perl | libgd-gd2-noxpm-perl, libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype, libjs-scriptaculous, libvm-ec2-perl, libmodule-build-perl, libcgi-pm-perl, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17486 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-apache2; however: Package dh-apache2 is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on apache2-dev; however: Package apache2-dev is not installed. pbuilder-satisfydepends-dummy depends on libbio-graphics-perl; however: Package libbio-graphics-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-coordinate-perl; however: Package libbio-coordinate-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-db-seqfeature-perl; however: Package libbio-db-seqfeature-perl is not installed. pbuilder-satisfydepends-dummy depends on libcapture-tiny-perl; however: Package libcapture-tiny-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-session-perl; however: Package libcgi-session-perl is not installed. pbuilder-satisfydepends-dummy depends on libgd-gd2-perl | libgd-gd2-noxpm-perl; however: Package libgd-gd2-perl is not installed. Package libgd-gd2-noxpm-perl is not installed. pbuilder-satisfydepends-dummy depends on libio-string-perl; however: Package libio-string-perl is not installed. pbuilder-satisfydepends-dummy depends on libjson-perl; however: Package libjson-perl is not installed. pbuilder-satisfydepends-dummy depends on libstatistics-descriptive-perl; however: Package libstatistics-descriptive-perl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libhttp-daemon-perl; however: Package libhttp-daemon-perl is not installed. pbuilder-satisfydepends-dummy depends on sqlite3; however: Package sqlite3 is not installed. pbuilder-satisfydepends-dummy depends on libdbd-sqlite3-perl; however: Package libdbd-sqlite3-perl is not installed. pbuilder-satisfydepends-dummy depends on libterm-readkey-perl; however: Package libterm-readkey-perl is not installed. pbuilder-satisfydepends-dummy depends on libjs-prototype; however: Package libjs-prototype is not installed. pbuilder-satisfydepends-dummy depends on libjs-scriptaculous; however: Package libjs-scriptaculous is not installed. pbuilder-satisfydepends-dummy depends on libvm-ec2-perl; however: Package libvm-ec2-perl is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. pbuilder-satisfydepends-dummy depends on libcgi-pm-perl; however: Package libcgi-pm-perl is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: apache2-bin{a} apache2-dev{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libanyevent-cachedns-perl{a} libanyevent-http-perl{a} libanyevent-perl{a} libapache-dbi-perl{a} libapache2-mod-perl2{a} libapr1{a} libapr1-dev{a} libaprutil1{a} libaprutil1-dbd-sqlite3{a} libaprutil1-dev{a} libaprutil1-ldap{a} libarchive-zip-perl{a} libbio-coordinate-perl{a} libbio-db-biofetch-perl{a} libbio-db-gff-perl{a} libbio-db-seqfeature-perl{a} libbio-graphics-perl{a} libbio-perl-perl{a} libbrotli1{a} libbsd0{a} libcapture-tiny-perl{a} libcgi-pm-perl{a} libcgi-session-perl{a} libclass-data-inheritable-perl{a} libcommon-sense-perl{a} libcurl4{a} libdata-stag-perl{a} libdbd-pg-perl{a} libdbd-sqlite3-perl{a} libdbi-perl{a} libdebhelper-perl{a} libdeflate0{a} libdevel-stacktrace-perl{a} libdevel-symdump-perl{a} libelf1{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libexpat1-dev{a} libexporter-tiny-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgd-perl{a} libgd3{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-daemon-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu67{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libjansson4{a} libjbig0{a} libjpeg62-turbo{a} libjs-prototype{a} libjs-scriptaculous{a} libjson-perl{a} libldap-2.4-2{a} libldap2-dev{a} liblist-moreutils-perl{a} liblist-moreutils-xs-perl{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-build-perl{a} libmpdec3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpipeline1{a} libpng16-16{a} libpq5{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsctp-dev{a} libsctp1{a} libsigsegv2{a} libssh2-1{a} libstatistics-descriptive-perl{a} libstring-approx-perl{a} libsub-override-perl{a} libsub-uplevel-perl{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtiff5{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvm-ec2-perl{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-simple-perl{a} libxml2{a} libxpm4{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} rename{a} sensible-utils{a} sqlite3{a} tzdata{a} ucf{a} uuid-dev{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl javascript-common libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache2-reload-perl libarchive-cpio-perl libarray-compare-perl libasync-interrupt-perl libberkeleydb-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libbio-scf-perl libbsd-resource-perl libcache-cache-perl libcgi-fast-perl libclone-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libev-perl libevent-perl libfreezethaw-perl libgd-svg-perl libgraph-perl libgraphviz-perl libguard-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libio-stringy-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libmodule-signature-perl libpod-parser-perl libpod-readme-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsoftware-license-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libxml-dom-xpath-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk publicsuffix wget 0 packages upgraded, 171 newly installed, 0 to remove and 0 not upgraded. Need to get 47.2 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8+deb11u1 [139 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2+deb11u5 [78.4 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf tzdata all 2021a-1+deb11u10 [286 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf netbase all 6.3 [19.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1w-0+deb11u1 [835 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3+deb11u1 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3+deb11u1 [120 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3+deb11u1 [68.2 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libapr1 armhf 1.7.0-6+deb11u2 [88.5 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libaprutil1 armhf 1.6.1-5+deb11u1 [83.5 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libaprutil1-dbd-sqlite3 armhf 1.6.1-5+deb11u1 [17.6 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1+deb11u1 [67.7 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1+deb11u1 [99.2 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3+deb11u1 [210 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libaprutil1-ldap armhf 1.6.1-5+deb11u1 [16.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+deb11u9 [314 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libjansson4 armhf 2.13.1-1.1 [35.9 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf liblua5.3-0 armhf 5.3.3-1.1+deb11u1 [102 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7+deb11u4 [602 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf apache2-bin armhf 2.4.56-1~deb11u2 [1260 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf uuid-dev armhf 2.36.1-8+deb11u1 [98.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libsctp1 armhf 1.0.18+dfsg-1 [27.6 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libsctp-dev armhf 1.0.18+dfsg-1 [81.0 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libapr1-dev armhf 1.7.0-6+deb11u2 [732 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libldap2-dev armhf 2.4.57+dfsg-3+deb11u1 [324 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2+deb11u5 [126 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libaprutil1-dev armhf 1.6.1-5+deb11u1 [404 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libpcre2-16-0 armhf 10.36-2+deb11u1 [198 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libpcre2-32-0 armhf 10.36-2+deb11u1 [189 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libpcre2-posix2 armhf 10.36-2+deb11u1 [48.6 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libpcre2-dev armhf 10.36-2+deb11u1 [640 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf apache2-dev armhf 2.4.56-1~deb11u2 [368 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libio-string-perl all 1.08-3.1 [11.8 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libdata-stag-perl all 0.14-2 [448 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libbio-perl-perl all 1.7.7-2 [2607 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 81 http://deb.debian.org/debian bullseye/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libexception-class-perl all 1.44-1 [32.3 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libtest-deep-perl all 1.130-1 [49.3 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libcapture-tiny-perl all 0.48-1 [26.0 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libtext-diff-perl all 1.45-1 [27.7 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libtest-differences-perl all 0.67-1 [18.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libsub-uplevel-perl all 0.2800-1.1 [16.5 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libtest-exception-perl all 0.43-1 [18.7 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libtest-warn-perl all 0.36-1 [16.2 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libtest-most-perl all 0.37-1 [24.9 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf bioperl all 1.7.7-2 [246 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf dh-exec armhf 0.23.2 [25.1 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libanyevent-perl armhf 7.170-2+b1 [399 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libanyevent-cachedns-perl all 0.08-2.1 [7292 B] Get: 98 http://deb.debian.org/debian bullseye/main armhf libcommon-sense-perl armhf 3.75-1+b4 [24.6 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libanyevent-http-perl all 2.25-1 [36.5 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libdevel-symdump-perl all 2.18-4 [17.5 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf liburi-perl all 5.08-1 [90.6 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libhttp-date-perl all 6.05-1 [10.4 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libfile-listing-perl all 6.14-1 [12.4 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libhtml-tree-perl all 5.07-2 [213 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libio-html-perl all 1.004-2 [16.1 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libhttp-message-perl all 6.28-1 [79.6 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf perl-openssl-defaults armhf 5 [7360 B] Get: 115 http://deb.debian.org/debian bullseye/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [303 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libio-socket-ssl-perl all 2.069-1 [215 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf libnet-http-perl all 6.20-1 [25.1 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libwww-perl all 6.52-1 [192 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf libapache2-mod-perl2 armhf 2.0.11-4 [863 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf libdbi-perl armhf 1.643-3+b1 [772 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libapache-dbi-perl all 1.12-2 [50.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libbio-coordinate-perl all 1.7.1-4 [56.7 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf libbio-db-biofetch-perl all 1.7.3-4 [17.5 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libcgi-pm-perl all 4.51-1 [224 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf libbio-db-gff-perl all 1.7.4-1 [273 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libpq5 armhf 13.11-0+deb11u1 [163 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libdbd-pg-perl armhf 3.14.2-1+b1 [209 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf libdbd-sqlite3-perl armhf 1.66-1+b1 [172 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf libbio-db-seqfeature-perl all 1.7.4-1 [169 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 134 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1+deb11u1 [357 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1+deb11u2 [226 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1+deb11u4 [272 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1+deb11u1 [103 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1+deb11u1 [711 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libxpm4 armhf 1:3.5.12-1.1~deb11u1 [44.1 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libgd3 armhf 2.3.0-2 [119 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libgd-perl armhf 2.73-1+b1 [136 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf libbio-graphics-perl all 2.40-6 [610 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf libcgi-session-perl all 4.48-3 [119 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libhttp-daemon-perl all 6.12-1+deb11u1 [23.4 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libjs-prototype all 1.7.1-3.1 [39.2 kB] Get: 156 http://deb.debian.org/debian bullseye/main armhf libjs-scriptaculous all 1.9.0-2.1 [110 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf libjson-perl all 4.03000-1 [88.6 kB] Get: 158 http://deb.debian.org/debian bullseye/main armhf liblist-moreutils-xs-perl armhf 0.430-2 [35.5 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf liblist-moreutils-perl all 0.430-2 [46.9 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libmodule-build-perl all 0.423100-1 [258 kB] Get: 161 http://deb.debian.org/debian bullseye/main armhf libstatistics-descriptive-perl all 3.0800-1 [65.6 kB] Get: 162 http://deb.debian.org/debian bullseye/main armhf libstring-approx-perl armhf 3.28-1+b3 [38.4 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libterm-readkey-perl armhf 2.38-1+b2 [26.6 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get: 167 http://deb.debian.org/debian bullseye/main armhf libxml-libxml-perl armhf 2.0134+dfsg-2+b1 [321 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf libxml-simple-perl all 2.25-1 [72.0 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libvm-ec2-perl all 1.28-2 [768 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf rename all 1.13-1 [18.0 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf sqlite3 armhf 3.34.1-3 [1055 kB] Fetched 47.2 MB in 4s (10.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17486 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_armhf.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:armhf. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../6-libexpat1_2.2.10-2+deb11u5_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:armhf (3.9.2-1) ... Setting up libexpat1:armhf (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18353 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package tzdata. Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:armhf. Preparing to unpack .../3-libmpdec3_2.5.1-1_armhf.deb ... Unpacking libmpdec3:armhf (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../5-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:armhf. Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_armhf.deb ... Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../7-python3.9_3.9.2-1_armhf.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.9.2-3_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20636 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package netbase. Preparing to unpack .../001-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_1.1.1w-0+deb11u1_armhf.deb ... Unpacking openssl (1.1.1w-0+deb11u1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3+deb11u1_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3+deb11u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.39-3+deb11u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3+deb11u1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3+deb11u1_armhf.deb ... Unpacking file (1:5.39-3+deb11u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../009-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libapr1:armhf. Preparing to unpack .../010-libapr1_1.7.0-6+deb11u2_armhf.deb ... Unpacking libapr1:armhf (1.7.0-6+deb11u2) ... Selecting previously unselected package libaprutil1:armhf. Preparing to unpack .../011-libaprutil1_1.6.1-5+deb11u1_armhf.deb ... Unpacking libaprutil1:armhf (1.6.1-5+deb11u1) ... Selecting previously unselected package libaprutil1-dbd-sqlite3:armhf. Preparing to unpack .../012-libaprutil1-dbd-sqlite3_1.6.1-5+deb11u1_armhf.deb ... Unpacking libaprutil1-dbd-sqlite3:armhf (1.6.1-5+deb11u1) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../013-libsasl2-modules-db_2.1.27+dfsg-2.1+deb11u1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../014-libsasl2-2_2.1.27+dfsg-2.1+deb11u1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1+deb11u1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../015-libldap-2.4-2_2.4.57+dfsg-3+deb11u1_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libaprutil1-ldap:armhf. Preparing to unpack .../016-libaprutil1-ldap_1.6.1-5+deb11u1_armhf.deb ... Unpacking libaprutil1-ldap:armhf (1.6.1-5+deb11u1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../017-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../018-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../019-libpsl5_0.21.0-1.2_armhf.deb ... Unpacking libpsl5:armhf (0.21.0-1.2) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../020-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../021-libssh2-1_1.9.0-2_armhf.deb ... Unpacking libssh2-1:armhf (1.9.0-2) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../022-libcurl4_7.74.0-1.3+deb11u9_armhf.deb ... Unpacking libcurl4:armhf (7.74.0-1.3+deb11u9) ... Selecting previously unselected package libjansson4:armhf. Preparing to unpack .../023-libjansson4_2.13.1-1.1_armhf.deb ... Unpacking libjansson4:armhf (2.13.1-1.1) ... Selecting previously unselected package liblua5.3-0:armhf. Preparing to unpack .../024-liblua5.3-0_5.3.3-1.1+deb11u1_armhf.deb ... Unpacking liblua5.3-0:armhf (5.3.3-1.1+deb11u1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../025-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../026-libxml2_2.9.10+dfsg-6.7+deb11u4_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7+deb11u4) ... Selecting previously unselected package apache2-bin. Preparing to unpack .../027-apache2-bin_2.4.56-1~deb11u2_armhf.deb ... Unpacking apache2-bin (2.4.56-1~deb11u2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../028-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../029-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../030-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../031-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package automake. Preparing to unpack .../032-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../033-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../034-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../035-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../036-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../038-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../039-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../040-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../041-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../042-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../043-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../044-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../045-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../046-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package uuid-dev:armhf. Preparing to unpack .../047-uuid-dev_2.36.1-8+deb11u1_armhf.deb ... Unpacking uuid-dev:armhf (2.36.1-8+deb11u1) ... Selecting previously unselected package libsctp1:armhf. Preparing to unpack .../048-libsctp1_1.0.18+dfsg-1_armhf.deb ... Unpacking libsctp1:armhf (1.0.18+dfsg-1) ... Selecting previously unselected package libsctp-dev:armhf. Preparing to unpack .../049-libsctp-dev_1.0.18+dfsg-1_armhf.deb ... Unpacking libsctp-dev:armhf (1.0.18+dfsg-1) ... Selecting previously unselected package libapr1-dev. Preparing to unpack .../050-libapr1-dev_1.7.0-6+deb11u2_armhf.deb ... Unpacking libapr1-dev (1.7.0-6+deb11u2) ... Selecting previously unselected package libldap2-dev:armhf. Preparing to unpack .../051-libldap2-dev_2.4.57+dfsg-3+deb11u1_armhf.deb ... Unpacking libldap2-dev:armhf (2.4.57+dfsg-3+deb11u1) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../052-libexpat1-dev_2.2.10-2+deb11u5_armhf.deb ... Unpacking libexpat1-dev:armhf (2.2.10-2+deb11u5) ... Selecting previously unselected package libaprutil1-dev. Preparing to unpack .../053-libaprutil1-dev_1.6.1-5+deb11u1_armhf.deb ... Unpacking libaprutil1-dev (1.6.1-5+deb11u1) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../054-libpcre2-16-0_10.36-2+deb11u1_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.36-2+deb11u1) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../055-libpcre2-32-0_10.36-2+deb11u1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.36-2+deb11u1) ... Selecting previously unselected package libpcre2-posix2:armhf. Preparing to unpack .../056-libpcre2-posix2_10.36-2+deb11u1_armhf.deb ... Unpacking libpcre2-posix2:armhf (10.36-2+deb11u1) ... Selecting previously unselected package libpcre2-dev:armhf. Preparing to unpack .../057-libpcre2-dev_10.36-2+deb11u1_armhf.deb ... Unpacking libpcre2-dev:armhf (10.36-2+deb11u1) ... Selecting previously unselected package apache2-dev. Preparing to unpack .../058-apache2-dev_2.4.56-1~deb11u2_armhf.deb ... Unpacking apache2-dev (2.4.56-1~deb11u2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../059-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../060-libdata-stag-perl_0.14-2_all.deb ... Unpacking libdata-stag-perl (0.14-2) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../061-libbio-perl-perl_1.7.7-2_all.deb ... Unpacking libbio-perl-perl (1.7.7-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../062-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../063-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../064-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../065-libtest-deep-perl_1.130-1_all.deb ... Unpacking libtest-deep-perl (1.130-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../066-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../067-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../068-libtext-diff-perl_1.45-1_all.deb ... Unpacking libtext-diff-perl (1.45-1) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../069-libtest-differences-perl_0.67-1_all.deb ... Unpacking libtest-differences-perl (0.67-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../070-libsub-uplevel-perl_0.2800-1.1_all.deb ... Unpacking libsub-uplevel-perl (0.2800-1.1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../071-libtest-exception-perl_0.43-1_all.deb ... Unpacking libtest-exception-perl (0.43-1) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../072-libtest-warn-perl_0.36-1_all.deb ... Unpacking libtest-warn-perl (0.36-1) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../073-libtest-most-perl_0.37-1_all.deb ... Unpacking libtest-most-perl (0.37-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../074-bioperl_1.7.7-2_all.deb ... Unpacking bioperl (1.7.7-2) ... Selecting previously unselected package dh-exec. Preparing to unpack .../075-dh-exec_0.23.2_armhf.deb ... Unpacking dh-exec (0.23.2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../076-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../077-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libanyevent-perl. Preparing to unpack .../078-libanyevent-perl_7.170-2+b1_armhf.deb ... Unpacking libanyevent-perl (7.170-2+b1) ... Selecting previously unselected package libanyevent-cachedns-perl. Preparing to unpack .../079-libanyevent-cachedns-perl_0.08-2.1_all.deb ... Unpacking libanyevent-cachedns-perl (0.08-2.1) ... Selecting previously unselected package libcommon-sense-perl. Preparing to unpack .../080-libcommon-sense-perl_3.75-1+b4_armhf.deb ... Unpacking libcommon-sense-perl (3.75-1+b4) ... Selecting previously unselected package libanyevent-http-perl. Preparing to unpack .../081-libanyevent-http-perl_2.25-1_all.deb ... Unpacking libanyevent-http-perl (2.25-1) ... Selecting previously unselected package libdevel-symdump-perl. Preparing to unpack .../082-libdevel-symdump-perl_2.18-4_all.deb ... Unpacking libdevel-symdump-perl (2.18-4) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../083-liburi-perl_5.08-1_all.deb ... Unpacking liburi-perl (5.08-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../084-libencode-locale-perl_1.05-1.1_all.deb ... Unpacking libencode-locale-perl (1.05-1.1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../085-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../086-libhttp-date-perl_6.05-1_all.deb ... Unpacking libhttp-date-perl (6.05-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../087-libfile-listing-perl_6.14-1_all.deb ... Unpacking libfile-listing-perl (6.14-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../088-libhtml-tagset-perl_3.20-4_all.deb ... Unpacking libhtml-tagset-perl (3.20-4) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../089-libhtml-parser-perl_3.75-1+b1_armhf.deb ... Unpacking libhtml-parser-perl (3.75-1+b1) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../090-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../091-libio-html-perl_1.004-2_all.deb ... Unpacking libio-html-perl (1.004-2) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../092-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../093-libhttp-message-perl_6.28-1_all.deb ... Unpacking libhttp-message-perl (6.28-1) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../094-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../095-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:armhf. Preparing to unpack .../096-perl-openssl-defaults_5_armhf.deb ... Unpacking perl-openssl-defaults:armhf (5) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../097-libnet-ssleay-perl_1.88-3+b1_armhf.deb ... Unpacking libnet-ssleay-perl (1.88-3+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../098-libio-socket-ssl-perl_2.069-1_all.deb ... Unpacking libio-socket-ssl-perl (2.069-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../099-libnet-http-perl_6.20-1_all.deb ... Unpacking libnet-http-perl (6.20-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../100-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../101-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../102-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../103-libwww-perl_6.52-1_all.deb ... Unpacking libwww-perl (6.52-1) ... Selecting previously unselected package libapache2-mod-perl2. Preparing to unpack .../104-libapache2-mod-perl2_2.0.11-4_armhf.deb ... Unpacking libapache2-mod-perl2 (2.0.11-4) ... Selecting previously unselected package libdbi-perl:armhf. Preparing to unpack .../105-libdbi-perl_1.643-3+b1_armhf.deb ... Unpacking libdbi-perl:armhf (1.643-3+b1) ... Selecting previously unselected package libapache-dbi-perl. Preparing to unpack .../106-libapache-dbi-perl_1.12-2_all.deb ... Unpacking libapache-dbi-perl (1.12-2) ... Selecting previously unselected package libbio-coordinate-perl. Preparing to unpack .../107-libbio-coordinate-perl_1.7.1-4_all.deb ... Unpacking libbio-coordinate-perl (1.7.1-4) ... Selecting previously unselected package libbio-db-biofetch-perl. Preparing to unpack .../108-libbio-db-biofetch-perl_1.7.3-4_all.deb ... Unpacking libbio-db-biofetch-perl (1.7.3-4) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../109-libcgi-pm-perl_4.51-1_all.deb ... Unpacking libcgi-pm-perl (4.51-1) ... Selecting previously unselected package libbio-db-gff-perl. Preparing to unpack .../110-libbio-db-gff-perl_1.7.4-1_all.deb ... Unpacking libbio-db-gff-perl (1.7.4-1) ... Selecting previously unselected package libpq5:armhf. Preparing to unpack .../111-libpq5_13.11-0+deb11u1_armhf.deb ... Unpacking libpq5:armhf (13.11-0+deb11u1) ... Selecting previously unselected package libdbd-pg-perl. Preparing to unpack .../112-libdbd-pg-perl_3.14.2-1+b1_armhf.deb ... Unpacking libdbd-pg-perl (3.14.2-1+b1) ... Selecting previously unselected package libdbd-sqlite3-perl:armhf. Preparing to unpack .../113-libdbd-sqlite3-perl_1.66-1+b1_armhf.deb ... Unpacking libdbd-sqlite3-perl:armhf (1.66-1+b1) ... Selecting previously unselected package libbio-db-seqfeature-perl. Preparing to unpack .../114-libbio-db-seqfeature-perl_1.7.4-1_all.deb ... Unpacking libbio-db-seqfeature-perl (1.7.4-1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../115-libpng16-16_1.6.37-3_armhf.deb ... Unpacking libpng16-16:armhf (1.6.37-3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../116-libfreetype6_2.10.4+dfsg-1+deb11u1_armhf.deb ... Unpacking libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../117-libfontconfig1_2.13.1-4.2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-4.2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../118-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../119-libdeflate0_1.7-1_armhf.deb ... Unpacking libdeflate0:armhf (1.7-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../120-libjbig0_2.1-3.1+b2_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../121-libwebp6_0.6.1-2.1+deb11u2_armhf.deb ... Unpacking libwebp6:armhf (0.6.1-2.1+deb11u2) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../122-libtiff5_4.2.0-1+deb11u4_armhf.deb ... Unpacking libtiff5:armhf (4.2.0-1+deb11u4) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../123-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../124-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../125-libbsd0_0.11.3-1+deb11u1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1+deb11u1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../126-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../127-libxcb1_1.14-3_armhf.deb ... Unpacking libxcb1:armhf (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../128-libx11-data_2%3a1.7.2-1+deb11u1_all.deb ... Unpacking libx11-data (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../129-libx11-6_2%3a1.7.2-1+deb11u1_armhf.deb ... Unpacking libx11-6:armhf (2:1.7.2-1+deb11u1) ... Selecting previously unselected package libxpm4:armhf. Preparing to unpack .../130-libxpm4_1%3a3.5.12-1.1~deb11u1_armhf.deb ... Unpacking libxpm4:armhf (1:3.5.12-1.1~deb11u1) ... Selecting previously unselected package libgd3:armhf. Preparing to unpack .../131-libgd3_2.3.0-2_armhf.deb ... Unpacking libgd3:armhf (2.3.0-2) ... Selecting previously unselected package libgd-perl. Preparing to unpack .../132-libgd-perl_2.73-1+b1_armhf.deb ... Unpacking libgd-perl (2.73-1+b1) ... Selecting previously unselected package libbio-graphics-perl. Preparing to unpack .../133-libbio-graphics-perl_2.40-6_all.deb ... Unpacking libbio-graphics-perl (2.40-6) ... Selecting previously unselected package libcgi-session-perl. Preparing to unpack .../134-libcgi-session-perl_4.48-3_all.deb ... Unpacking libcgi-session-perl (4.48-3) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../135-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package libhttp-daemon-perl. Preparing to unpack .../136-libhttp-daemon-perl_6.12-1+deb11u1_all.deb ... Unpacking libhttp-daemon-perl (6.12-1+deb11u1) ... Selecting previously unselected package libjs-prototype. Preparing to unpack .../137-libjs-prototype_1.7.1-3.1_all.deb ... Unpacking libjs-prototype (1.7.1-3.1) ... Selecting previously unselected package libjs-scriptaculous. Preparing to unpack .../138-libjs-scriptaculous_1.9.0-2.1_all.deb ... Unpacking libjs-scriptaculous (1.9.0-2.1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../139-libjson-perl_4.03000-1_all.deb ... Unpacking libjson-perl (4.03000-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../140-liblist-moreutils-xs-perl_0.430-2_armhf.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../141-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../142-libmodule-build-perl_0.423100-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423100-1) ... Selecting previously unselected package libstatistics-descriptive-perl. Preparing to unpack .../143-libstatistics-descriptive-perl_3.0800-1_all.deb ... Unpacking libstatistics-descriptive-perl (3.0800-1) ... Selecting previously unselected package libstring-approx-perl. Preparing to unpack .../144-libstring-approx-perl_3.28-1+b3_armhf.deb ... Unpacking libstring-approx-perl (3.28-1+b3) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../145-libterm-readkey-perl_2.38-1+b2_armhf.deb ... Unpacking libterm-readkey-perl (2.38-1+b2) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../146-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../147-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../148-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../149-libxml-libxml-perl_2.0134+dfsg-2+b1_armhf.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../150-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libvm-ec2-perl. Preparing to unpack .../151-libvm-ec2-perl_1.28-2_all.deb ... Unpacking libvm-ec2-perl (1.28-2) ... Selecting previously unselected package rename. Preparing to unpack .../152-rename_1.13-1_all.deb ... Unpacking rename (1.13-1) ... Selecting previously unselected package sqlite3. Preparing to unpack .../153-sqlite3_3.34.1-3_armhf.deb ... Unpacking sqlite3 (3.34.1-3) ... Setting up media-types (4.0.0) ... Setting up libanyevent-perl (7.170-2+b1) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up libstring-approx-perl (3.28-1+b3) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libtest-deep-perl (1.130-1) ... Setting up libmagic-mgc (1:5.39-3+deb11u1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3+deb11u1) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up libapr1:armhf (1.7.0-6+deb11u2) ... Setting up perl-openssl-defaults:armhf (5) ... Setting up libcommon-sense-perl (3.75-1+b4) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up libanyevent-http-perl (2.25-1) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up rename (1.13-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.39-3+deb11u1) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libpcre2-16-0:armhf (10.36-2+deb11u1) ... Setting up libjansson4:armhf (2.13.1-1.1) ... Setting up libmodule-build-perl (0.423100-1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1+deb11u1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jan 8 14:36:56 UTC 2024. Universal Time is now: Mon Jan 8 14:36:56 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libpcre2-32-0:armhf (10.36-2+deb11u1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libexpat1-dev:armhf (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up libtext-diff-perl (1.45-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up uuid-dev:armhf (2.36.1-8+deb11u1) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libanyevent-cachedns-perl (0.08-2.1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up libio-html-perl (1.004-2) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:armhf (0.6.1-2.1+deb11u2) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libpcre2-posix2:armhf (10.36-2+deb11u1) ... Setting up libjs-prototype (1.7.1-3.1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1+deb11u1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up libsctp1:armhf (1.0.18+dfsg-1) ... Setting up libdata-stag-perl (0.14-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up liblua5.3-0:armhf (5.3.3-1.1+deb11u1) ... Setting up libjson-perl (4.03000-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-uplevel-perl (0.2800-1.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up netbase (6.3) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libtiff5:armhf (4.2.0-1+deb11u4) ... Setting up libdevel-symdump-perl (2.18-4) ... Setting up libbio-perl-perl (1.7.7-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b2) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libbsd0:armhf (0.11.3-1+deb11u1) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7+deb11u4) ... Setting up liburi-perl (5.08-1) ... Setting up libdbi-perl:armhf (1.643-3+b1) ... Setting up libaprutil1:armhf (1.6.1-5+deb11u1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libpcre2-dev:armhf (10.36-2+deb11u1) ... Setting up libtool (2.4.6-15) ... Setting up libjs-scriptaculous (1.9.0-2.1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtest-warn-perl (0.36-1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libtest-differences-perl (0.67-1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3+deb11u1) ... Setting up libnet-http-perl (6.20-1) ... Setting up m4 (1.4.18-5) ... Setting up libexception-class-perl (1.44-1) ... Setting up libaprutil1-ldap:armhf (1.6.1-5+deb11u1) ... Setting up libaprutil1-dbd-sqlite3:armhf (1.6.1-5+deb11u1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libldap2-dev:armhf (2.4.57+dfsg-3+deb11u1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libtest-exception-perl (0.43-1) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1+deb11u1) ... Setting up libsctp-dev:armhf (1.0.18+dfsg-1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up libcurl4:armhf (7.74.0-1.3+deb11u9) ... Setting up libx11-6:armhf (2:1.7.2-1+deb11u1) ... Setting up libdbd-sqlite3-perl:armhf (1.66-1+b1) ... Setting up sqlite3 (3.34.1-3) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up libhttp-message-perl (6.28-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libstatistics-descriptive-perl (3.0800-1) ... Setting up libxpm4:armhf (1:3.5.12-1.1~deb11u1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libtest-most-perl (0.37-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libcgi-pm-perl (4.51-1) ... Setting up libpq5:armhf (13.11-0+deb11u1) ... Setting up libdbd-pg-perl (3.14.2-1+b1) ... Setting up apache2-bin (2.4.56-1~deb11u2) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up libcgi-session-perl (4.48-3) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhttp-daemon-perl (6.12-1+deb11u1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up bioperl (1.7.7-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up dh-exec (0.23.2) ... Setting up libbio-coordinate-perl (1.7.1-4) ... Setting up libapr1-dev (1.7.0-6+deb11u2) ... Setting up libgd3:armhf (2.3.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libaprutil1-dev (1.6.1-5+deb11u1) ... Setting up apache2-dev (2.4.56-1~deb11u2) ... Setting up libgd-perl (2.73-1+b1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libwww-perl (6.52-1) ... Setting up libapache2-mod-perl2 (2.0.11-4) ... Setting up libbio-db-biofetch-perl (1.7.3-4) ... Setting up libvm-ec2-perl (1.28-2) ... Setting up libapache-dbi-perl (1.12-2) ... Setting up libbio-db-gff-perl (1.7.4-1) ... Setting up libbio-db-seqfeature-perl (1.7.4-1) ... Setting up libbio-graphics-perl (2.40-6) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/830/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for bullseye I: user script /srv/workspace/pbuilder/830/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/gbrowse-2.56+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gbrowse_2.56+dfsg-8_source.changes dpkg-buildpackage: info: source package gbrowse dpkg-buildpackage: info: source version 2.56+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with apache2 dh_clean debian/rules build dh build --with apache2 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse perl Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=/build/reproducible-path/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse WARNING: the following files are missing in your kit: contrib/ace2gff.pl contrib/AxtPairwise_convert/axt2phy.pl contrib/blast2gff.pl contrib/conf_files/01.yeast.conf contrib/conf_files/02.wormbase.conf contrib/conf_files/03.fly.conf contrib/conf_files/04.human.conf contrib/conf_files/05.embl_proxy.conf contrib/conf_files/06.biosql.conf contrib/conf_files/07.chado.conf contrib/conf_files/08.genbank.conf contrib/conf_files/09.human_karyotype.conf contrib/conf_files/index.html contrib/conf_files/wormbase.syn contrib/Coverage/INSTALL contrib/Coverage/plugin/Coverage.pm contrib/Coverage/README contrib/gdump.pl contrib/GeneFinder/genefinder/gfcode.c contrib/GeneFinder/genefinder/README contrib/GeneFinder/genefinder/readseq.c contrib/GeneFinder/genefinder/readseq.h contrib/GeneFinder/nematode_gftables/cds.hex contrib/GeneFinder/nematode_gftables/gftables contrib/GeneFinder/nematode_gftables/newnem.atg contrib/GeneFinder/nematode_gftables/newnem.codon contrib/GeneFinder/nematode_gftables/newnem.gene contrib/GeneFinder/nematode_gftables/newnem.intron3 contrib/GeneFinder/nematode_gftables/newnem.intron5 contrib/GeneFinder/nematode_gftables/ref.hist contrib/GeneFinder/nematode_gftables/zk637.atg contrib/GeneFinder/nematode_gftables/zk637.intron3 contrib/GeneFinder/nematode_gftables/zk637.intron5 contrib/GeneFinder/nematode_gftables/zk637.trinuc contrib/import_ncbi_mv_hs.pl contrib/install_macosx/BuildConfig.pm contrib/install_macosx/README.html contrib/install_macosx/README.pod contrib/install_macosx/scripts/build-gbrowse.pl contrib/install_macosx/scripts/build-libraries.pl contrib/README contrib/SynView/cgi-lib/DAS/GUS.pm contrib/SynView/cgi-lib/DAS/GUS/Segment.pm contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm contrib/SynView/gbrowse.conf/plasmodb.conf contrib/SynView/gbrowse.conf/plasmodb.xml contrib/SynView/MAL11/MAL11.conf contrib/SynView/MAL11/MAL11.fa contrib/SynView/MAL11/MAL11.gff3 contrib/SynView/README contrib/TextDumper/README contrib/TextDumper/TextDumper.pm lib/Bio/DB/SeqFeature/Store/LoadHelper.pm Please inform the author. Checking prerequisites... recommends: * Bio::DB::BigFile is not installed * Bio::DB::Sam is not installed * Bio::Das is not installed * Crypt::SSLeay is not installed * DBD::mysql is not installed * DB_File::Lock is not installed * FCGI is not installed * File::NFSLock is not installed * GD::SVG is not installed * Net::OpenID::Consumer is not installed * Net::SMTP::SSL is not installed * Parse::Apache::ServerStatus is not installed * Template is not installed * Do not worry if some "recommended" prerequisites are missing. You can install * * them later if you need the features they provide. Do not proceed with the * * install if any of "REQUIRED" prerequisites are missing. * * * * The optional Safe::World module does not currently run on Perl 5.10 or * * higher, and so cannot be installed. * ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. **** WARNING ***************************************************************************************** If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to create/update your user account database. See /etc/gbrowse2/GBrowse.conf.new for suggested settings. ****************************************************************************************************** Now run: ./Build test ./Build demo (optional) ./Build install (as superuser/administrator) -or- ./Build install_slave (optional, for slave installations) Other useful targets: ./Build register (to register your copy of GBrowse) ./Build reconfig (to reconfigure install locations) ./Build demostop (to stop the demo) Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'GBrowse' version '2.56' make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_auto_build perl Build NOTE: Run ./Build reconfig to change existing configuration. Building GBrowse arm-linux-gnueabihf-gcc -I/build/reproducible-path/gbrowse-2.56+dfsg/libalign -I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE -DVERSION="2.56" -DXS_VERSION="2.56" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/build/reproducible-path/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/build/reproducible-path/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs') arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/build/reproducible-path/gbrowse-2.56+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o Performing variable substitutions in blib/conf/aws_balancer.conf Performing variable substitutions in blib/conf/detail_select_menu.conf Performing variable substitutions in blib/conf/enzymes.txt Performing variable substitutions in blib/conf/GBrowse.conf Performing variable substitutions in blib/conf/log4perl.conf Performing variable substitutions in blib/conf/MobyServices/moby.conf Performing variable substitutions in blib/conf/pop_demo.conf Performing variable substitutions in blib/conf/renderfarm.conf Performing variable substitutions in blib/conf/slave_preload.conf Performing variable substitutions in blib/conf/submitter_plugin.conf Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf Performing variable substitutions in blib/conf/synteny/rice_synteny.conf Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf Performing variable substitutions in blib/conf/themes/solid_gray_colors Performing variable substitutions in blib/conf/themes/transparent_colors Performing variable substitutions in blib/conf/themes/warm_colors Performing variable substitutions in blib/conf/volvox.conf Performing variable substitutions in blib/conf/yeast_chr1+2.conf Performing variable substitutions in blib/conf/yeast_renderfarm.conf Performing variable substitutions in blib/conf/yeast_simple.conf Performing variable substitutions in blib/htdocs/annotation_help.html Performing variable substitutions in blib/htdocs/cloud_index.html Performing variable substitutions in blib/htdocs/example_scripts/index.html Performing variable substitutions in blib/htdocs/example_scripts/README Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html Performing variable substitutions in blib/htdocs/general_help.html Performing variable substitutions in blib/htdocs/index.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html Performing variable substitutions in blib/htdocs/vbox_index.html Use of uninitialized value in pattern match (m//) at /build/reproducible-path/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778. debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_auto_test -- TEST_FILES="t/00.compile.t t/01.yeast.t t/02.rearchitecture.t t/05.deferredrendering.t t/07.balancer.t t/08.calign.t" perl Build test --verbose 1 "TEST_FILES=t/00.compile.t t/01.yeast.t t/02.rearchitecture.t t/05.deferredrendering.t t/07.balancer.t t/08.calign.t" NOTE: Run ./Build reconfig to change existing configuration. Use of uninitialized value in pattern match (m//) at /build/reproducible-path/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778. t/00.compile.t ............ ok 1 - cgi-bin/das compiled ok ok 2 - cgi-bin/das stderr said "syntax OK" ok 3 - cgi-bin/das nothing on stdout ok 4 - cgi-bin/gbgff compiled ok ok 5 - cgi-bin/gbgff stderr said "syntax OK" ok 6 - cgi-bin/gbgff nothing on stdout ok 7 - cgi-bin/gbrowse compiled ok ok 8 - cgi-bin/gbrowse stderr said "syntax OK" ok 9 - cgi-bin/gbrowse nothing on stdout ok 10 - cgi-bin/gbrowse_details compiled ok ok 11 - cgi-bin/gbrowse_details stderr said "syntax OK" ok 12 - cgi-bin/gbrowse_details nothing on stdout ok 13 # skip explicitly skipping cgi-bin/gbrowse_gmap ok 14 - cgi-bin/gbrowse_img compiled ok ok 15 - cgi-bin/gbrowse_img stderr said "syntax OK" ok 16 - cgi-bin/gbrowse_img nothing on stdout ok 17 - cgi-bin/gbrowse_key_img compiled ok ok 18 - cgi-bin/gbrowse_key_img stderr said "syntax OK" ok 19 - cgi-bin/gbrowse_key_img nothing on stdout ok 20 - cgi-bin/gbrowse_login compiled ok ok 21 - cgi-bin/gbrowse_login stderr said "syntax OK" ok 22 - cgi-bin/gbrowse_login nothing on stdout ok 23 - cgi-bin/gbrowse_syn compiled ok ok 24 - cgi-bin/gbrowse_syn stderr said "syntax OK" ok 25 - cgi-bin/gbrowse_syn nothing on stdout ok 26 - bin/auto_install_databases.pl compiled ok ok 27 - bin/auto_install_databases.pl stderr said "syntax OK" ok 28 - bin/auto_install_databases.pl nothing on stdout ok 29 - bin/bed2gff3.pl compiled ok ok 30 - bin/bed2gff3.pl stderr said "syntax OK" ok 31 - bin/bed2gff3.pl nothing on stdout ok 32 - bin/bp_load_gff.pl compiled ok ok 33 - bin/bp_load_gff.pl stderr said "syntax OK" ok 34 - bin/bp_load_gff.pl nothing on stdout ok 35 # skip explicitly skipping bin/gbrowse_aws_balancer.pl ok 36 - bin/gbrowse_change_passwd.pl compiled ok ok 37 - bin/gbrowse_change_passwd.pl stderr said "syntax OK" ok 38 - bin/gbrowse_change_passwd.pl nothing on stdout ok 39 - bin/gbrowse_clean.pl compiled ok ok 40 - bin/gbrowse_clean.pl stderr said "syntax OK" ok 41 - bin/gbrowse_clean.pl nothing on stdout ok 42 - bin/gbrowse_configure_slaves.pl compiled ok ok 43 - bin/gbrowse_configure_slaves.pl stderr said "syntax OK" ok 44 - bin/gbrowse_configure_slaves.pl nothing on stdout ok 45 - bin/gbrowse_create_account.pl compiled ok ok 46 - bin/gbrowse_create_account.pl stderr said "syntax OK" ok 47 - bin/gbrowse_create_account.pl nothing on stdout ok 48 # skip explicitly skipping bin/gbrowse_grow_cloud_vol.pl ok 49 - bin/gbrowse_import_ucsc_db.pl compiled ok ok 50 - bin/gbrowse_import_ucsc_db.pl stderr said "syntax OK" ok 51 - bin/gbrowse_import_ucsc_db.pl nothing on stdout ok 52 - bin/gbrowse_metadb_config.pl compiled ok ok 53 - bin/gbrowse_metadb_config.pl stderr said "syntax OK" ok 54 - bin/gbrowse_metadb_config.pl nothing on stdout ok 55 # skip explicitly skipping bin/gbrowse_netinstall.pl ok 56 # skip explicitly skipping bin/gbrowse_netinstall2.pl ok 57 - bin/gbrowse_set_admin_passwd.pl compiled ok ok 58 - bin/gbrowse_set_admin_passwd.pl stderr said "syntax OK" ok 59 - bin/gbrowse_set_admin_passwd.pl nothing on stdout ok 60 - bin/gbrowse_slave compiled ok ok 61 - bin/gbrowse_slave stderr said "syntax OK" ok 62 - bin/gbrowse_slave nothing on stdout ok 63 # skip explicitly skipping bin/gbrowse_slave_start_aws.sh ok 64 - bin/gbrowse_syn_load_alignment_database.pl compiled ok ok 65 - bin/gbrowse_syn_load_alignment_database.pl stderr said "syntax OK" ok 66 - bin/gbrowse_syn_load_alignment_database.pl nothing on stdout ok 67 - bin/gbrowse_syn_load_alignments_msa.pl compiled ok ok 68 - bin/gbrowse_syn_load_alignments_msa.pl stderr said "syntax OK" ok 69 - bin/gbrowse_syn_load_alignments_msa.pl nothing on stdout ok 70 # skip explicitly skipping bin/gbrowse_sync_aws_slave.pl ok 71 - bin/gtf2gff3.pl compiled ok ok 72 - bin/gtf2gff3.pl stderr said "syntax OK" ok 73 - bin/gtf2gff3.pl nothing on stdout ok 74 - bin/load_genbank.pl compiled ok ok 75 - bin/load_genbank.pl stderr said "syntax OK" ok 76 - bin/load_genbank.pl nothing on stdout ok 77 # skip explicitly skipping bin/make_das_conf.pl ok 78 - bin/process_bamfiles.pl compiled ok ok 79 - bin/process_bamfiles.pl stderr said "syntax OK" ok 80 - bin/process_bamfiles.pl nothing on stdout ok 81 - bin/process_gadfly.pl compiled ok ok 82 - bin/process_gadfly.pl stderr said "syntax OK" ok 83 - bin/process_gadfly.pl nothing on stdout ok 84 - bin/process_ncbi_human.pl compiled ok ok 85 - bin/process_ncbi_human.pl stderr said "syntax OK" ok 86 - bin/process_ncbi_human.pl nothing on stdout ok 87 - bin/process_sgd.pl compiled ok ok 88 - bin/process_sgd.pl stderr said "syntax OK" ok 89 - bin/process_sgd.pl nothing on stdout ok 90 - bin/report_missing_language_tags.pl compiled ok ok 91 - bin/report_missing_language_tags.pl stderr said "syntax OK" ok 92 - bin/report_missing_language_tags.pl nothing on stdout ok 93 - bin/scan_gbrowse.pl compiled ok ok 94 - bin/scan_gbrowse.pl stderr said "syntax OK" ok 95 - bin/scan_gbrowse.pl nothing on stdout ok 96 - bin/split_wig.pl compiled ok ok 97 - bin/split_wig.pl stderr said "syntax OK" ok 98 - bin/split_wig.pl nothing on stdout ok 99 - bin/ucsc_genes2gff.pl compiled ok ok 100 - bin/ucsc_genes2gff.pl stderr said "syntax OK" ok 101 - bin/ucsc_genes2gff.pl nothing on stdout ok 102 - bin/wiggle2gff3.pl compiled ok ok 103 - bin/wiggle2gff3.pl stderr said "syntax OK" ok 104 - bin/wiggle2gff3.pl nothing on stdout 1..104 ok Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. t/01.yeast.t .............. 1..7 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/02.rearchitecture.t ..... 1..90 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, line 2. Use of uninitialized value $_[5] in pack at /usr/share/perl5/Bio/DB/IndexedBase.pm line 1005, line 2. cannot remove directory for /tmp/gbrowse_testing/t9NQZejM0T: No such file or directory at /usr/lib/arm-linux-gnueabihf/perl-base/File/Temp.pm line 911. t/03.render.t ............. 1..150 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Expected a map from remote server, but got nothing! at /build/reproducible-path/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm line 883, <> line 45. t/04.remoteserver.t ....... 1..43 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. cannot remove directory for /tmp/gbrowse_testing/ZqFizre1co: No such file or directory at t/05.deferredrendering.t line 178. t/05.deferredrendering.t .. 1..19 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. Use of uninitialized value in subtraction (-) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 778. Use of uninitialized value $curr_line in pattern match (m//) at /usr/share/perl5/Bio/DB/IndexedBase.pm line 781. t/06.featuresearch.t ...... 1..26 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok t/07.balancer.t ........... skipped: Optional module Parse::Apache::ServerStatus not installed t/07.karyotype.t .......... 1..3 ok 1 ok 2 ok 3 ok t/08.calign.t ............. 1..6 # Running under perl version 5.032001 for linux # Current time local: Tue Jan 9 04:39:42 2024 # Current time GMT: Mon Jan 8 14:39:42 2024 # Using Test.pm version 1.31 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok All tests successful. Files=10, Tests=448, 102 wallclock secs ( 0.46 usr 0.10 sys + 80.84 cusr 14.90 csys = 96.30 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with apache2 dh_testroot dh_prep debian/rules override_dh_installdirs make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' # svn(-buildpackage) seems to ignore the x bit chmod +x debian/gbrowse-calign.dirs dh_installdirs make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' ./Build --install_base=debian/gbrowse debianinstall NOTE: Run ./Build reconfig to change existing configuration. Use of uninitialized value in pattern match (m//) at /build/reproducible-path/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 778. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/auto/Bio/Graphics/Browser2/CAlign/CAlign.so Installing debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p Installing debian/gbrowse/man/man1/gbrowse_clean.pl.1p Installing debian/gbrowse/man/man1/gbrowse_aws_balancer.pl.1p Installing debian/gbrowse/man/man1/gbrowse_sync_aws_slave.pl.1p Installing debian/gbrowse/man/man1/make_das_conf.pl.1p Installing debian/gbrowse/man/man1/gtf2gff3.pl.1p Installing debian/gbrowse/man/man1/gbrowse_grow_cloud_vol.pl.1p Installing debian/gbrowse/man/man1/wiggle2gff3.pl.1p Installing debian/gbrowse/man/man1/load_genbank.pl.1p Installing debian/gbrowse/man/man1/bed2gff3.pl.1p Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbgff Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_details Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_img Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_login Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_key_img Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_syn Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/gbrowse_gmap Installing debian/gbrowse/usr/lib/cgi-bin/gbrowse/das Installing debian/gbrowse/etc/gbrowse/yeast_renderfarm.conf Installing debian/gbrowse/etc/gbrowse/GBrowse.conf Installing debian/gbrowse/etc/gbrowse/enzymes.txt Installing debian/gbrowse/etc/gbrowse/slave_preload.conf Installing debian/gbrowse/etc/gbrowse/volvox.conf Installing debian/gbrowse/etc/gbrowse/yeast_chr1+2.conf Installing debian/gbrowse/etc/gbrowse/pop_demo.conf Installing debian/gbrowse/etc/gbrowse/detail_select_menu.conf Installing debian/gbrowse/etc/gbrowse/yeast_simple.conf Installing debian/gbrowse/etc/gbrowse/renderfarm.conf Installing debian/gbrowse/etc/gbrowse/log4perl.conf Installing debian/gbrowse/etc/gbrowse/aws_balancer.conf Installing debian/gbrowse/etc/gbrowse/submitter_plugin.conf Installing debian/gbrowse/etc/gbrowse/plugins/TestAuthenticator.pm Installing debian/gbrowse/etc/gbrowse/plugins/FBTableDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/TrackDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/Spectrogram.pm Installing debian/gbrowse/etc/gbrowse/plugins/RestrictionAnnotator.pm Installing debian/gbrowse/etc/gbrowse/plugins/PamAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/plugins/AlignTwoSequences.pm Installing debian/gbrowse/etc/gbrowse/plugins/SinWave.pm Installing debian/gbrowse/etc/gbrowse/plugins/OligoFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/SequenceDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/FilterTest.pm Installing debian/gbrowse/etc/gbrowse/plugins/LDAPAuthenticate.pm Installing debian/gbrowse/etc/gbrowse/plugins/AttributeHiliter.pm Installing debian/gbrowse/etc/gbrowse/plugins/SourceTrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/test.pm Installing debian/gbrowse/etc/gbrowse/plugins/Aligner.pm Installing debian/gbrowse/etc/gbrowse/plugins/FastaDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/CreateBlastDB.pm Installing debian/gbrowse/etc/gbrowse/plugins/CMapDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/BatchDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/ProteinDumper.pm Installing debian/gbrowse/etc/gbrowse/plugins/Blat.pm Installing debian/gbrowse/etc/gbrowse/plugins/PrimerDesigner.pm Installing debian/gbrowse/etc/gbrowse/plugins/RandomGene.pm Installing debian/gbrowse/etc/gbrowse/plugins/Submitter.pm Installing debian/gbrowse/etc/gbrowse/plugins/SimpleTrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TrackFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/GeneFinder.pm Installing debian/gbrowse/etc/gbrowse/plugins/TestFinder.pm Installing debian/gbrowse/etc/gbrowse/languages/pl.pm Installing debian/gbrowse/etc/gbrowse/languages/ko.pm Installing debian/gbrowse/etc/gbrowse/languages/nl.pm Installing debian/gbrowse/etc/gbrowse/languages/ru.pm Installing debian/gbrowse/etc/gbrowse/languages/en.pm Installing debian/gbrowse/etc/gbrowse/languages/ja.pm Installing debian/gbrowse/etc/gbrowse/languages/de.pm Installing debian/gbrowse/etc/gbrowse/languages/zh_cn.pm Installing debian/gbrowse/etc/gbrowse/languages/es.pm Installing debian/gbrowse/etc/gbrowse/languages/POSIX.pm Installing debian/gbrowse/etc/gbrowse/languages/fr.pm Installing debian/gbrowse/etc/gbrowse/languages/it.pm Installing debian/gbrowse/etc/gbrowse/languages/zh.pm Installing debian/gbrowse/etc/gbrowse/languages/is.pm Installing debian/gbrowse/etc/gbrowse/themes/solid_gray_colors Installing debian/gbrowse/etc/gbrowse/themes/transparent_colors Installing debian/gbrowse/etc/gbrowse/themes/warm_colors Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/moby.conf Installing debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_plain_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_formatted_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/text_html_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm Installing debian/gbrowse/etc/gbrowse/MobyServices/GbrowseServices.PMS Installing debian/gbrowse/etc/gbrowse/synteny/wild_rice_synteny.conf Installing debian/gbrowse/etc/gbrowse/synteny/rice_synteny.conf Installing debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf Installing debian/gbrowse/var/lib/gbrowse/databases/admin_uploads/README Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/wild_rice/wild_rice.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/alignments/rice.aln.gz Installing debian/gbrowse/var/lib/gbrowse/databases/gbrowse_syn/rice/rice.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/pop_demo/pop_demo.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/dummy.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3 Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa Installing debian/gbrowse/var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/rat_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/human_cytobands.gff Installing debian/gbrowse/var/lib/gbrowse/databases/ideograms/mouse_cytobands.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/vbox_index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/general_help.html.zh Installing debian/gbrowse/usr/share/gbrowse/htdocs/gmod_cog.jpeg Installing debian/gbrowse/usr/share/gbrowse/htdocs/gbrowse_syn_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/annotation_help.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/cloud_index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_solid.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_elements.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/karyotype.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/snapshots.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-default.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/tracks.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_warm.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/subtracktable.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/menulink_active.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/titlebar-safari.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/helper.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern1.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/pattern3.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/favicon.ico Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/icon.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-on.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/test_file.bed Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/README Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/example_scripts/index.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/unittest.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/builder.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/regionSelect.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/overviewSelect.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/controller.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/menu.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.config.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/buttons.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/slider.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/snapshotManager.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/controls.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/scrollfix.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/trackFavorites.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/detailSelect.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/ajax_upload.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/dragdrop.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/rubber.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/ruler.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/login.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/x_cook.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/karyotype.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track_configure.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/autocomplete.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/balloon.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/toggle.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/subtracktable.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/GBox.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/box.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/effects.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/tabs.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/sound.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/subtracktable.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/track_pan.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/tutorial.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/tutorial.css Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/tutorial.phyTreeEdit.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.scf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/dog1_1700.wig Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_all.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/ests.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/species.tre Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/HEADER.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_all.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.wig Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_bacs.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans.fa Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3 Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/expression_levels.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/make_exon.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/reformat.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_feature.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_segments.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/bin/random_dna.pl Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure7.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure18.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/trace2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/segmented_features1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/canonical_gene3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure13a.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure16.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/third_party5.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/phylo_align1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure12.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/categorytable.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/custom_aggregators1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/segmented_features2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/enhancements2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/DAS1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/trace1.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure10.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/predicted_genes.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/descriptions1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/adding_dna_to_alignments1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/plugins2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/semantic_zooming1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure4.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure6.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/multiple_alignments3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure13b.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure15.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/canonical_gene2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/enhancements1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure28.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/dna2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/phylo_align2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure14.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/dna1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/aliases.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure17.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/dna1.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/basics1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/wiggle_density.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/canonical_gene1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/basic_conf1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/third_party4.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/plugins1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/graph1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/enhancements3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/third_party1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/third_party3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure7b.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure30.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure27.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure7a.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure9.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/setting_popup.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/multiple_alignments2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure22.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure24.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure19.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/cds1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure29.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure8.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/phylo_align3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure20.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure26.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure5.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/config_editing.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/overview1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/multiple_alignments1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/basic_conf2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure25.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/wiggle_density.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/third_party2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure23.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure21.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/figure11.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/figures/dna2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_refactored.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/HEADER.html Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_Phylo.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_quarter.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_core.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_halfway.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_extra.conf Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/track+settings.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/overview.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/navbar.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/detail.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload+remote.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/numeric+data.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/worm_exons_spec.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/detail_scale.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/yeast_I_genes_spec.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/landmark.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/multiple_hits.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/detail.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/detail_scale.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/landmark.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/overview+detail.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/search+settings.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/sugarcane_sorghum_synteny.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload_field.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload+edit.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/upload_list.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/worm_telomeric_spec.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/overview+detail.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/navbar.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/help/remote.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/grey.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green_r2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red4.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/query.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green_r1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green6.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/panleft2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/minus12.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_check.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/cursor-ewmove.ico Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/sorted_up.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red6.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_down.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ficon_2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green8.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/dark_0.4_pixel.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ruler.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_share.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/square.xpm Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/sorted_down.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/trash.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/blue_peaks.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/tools.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/mplus.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/sortable.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green7.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_mail.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red7.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red_peaks.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/minus.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/mminus.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/panright2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/trash.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/grey_0.4_pixel.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green3.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ficon.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/empty.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/menu.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/minus.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/spinner.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/pop_out.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/plus.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/panleft.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/fmini_2.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green_l1.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red5.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/check.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_ex.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/snap_trash.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/download.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/square.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ajax-loader.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/share.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/pop_in.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/fmini.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/opacity_thumb.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green5.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/panright.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/mplus.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/plus.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green_l2.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/red8.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ex.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/green4.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/open_open.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/buttons/ruler-icon.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_right.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/close.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon_ie.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_right.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_left.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_left.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/up_right.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/close.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_right.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/up_left.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/balloon.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_left.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/cloud.jpg Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/lrock005.jpg Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/backgrounds/steel.jpg Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/aim-logo.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/blogspot-logo.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/openid-logo.gif Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/livejournal-logo.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/myopenid-logo.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/yahoo-logo.png Installing debian/gbrowse/usr/share/gbrowse/htdocs/images/openid/google-logo.gif Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyBlock.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/DB/SyntenyIO.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/PageSettings.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Synteny.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/I18n.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Legacy/Graphics/Browser/Util.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/Alias.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/SeqFeature/Store/BedLoader.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/match_gap.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/wormbase_gene.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/waba_alignment.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/GFF/Aggregator/reftranscript.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/mysql.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/DB/Tagger/Tag.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/GBrowseFeature.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Karyotype.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RegionSearch.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PadAlignment.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Action.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Region.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserDB.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/GFFhelper.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SubtrackTable.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/ExternalData.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/I18n.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataBase.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Session.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RenderPanels.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/RemoteSet.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Markup.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataSource.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CachedTrack.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/SendMail.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Util.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/CAlign.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Realign.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/PluginSet.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/OptionPick.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Shellwords.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/SnapshotManager.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Login.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/TrackConfig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/Status.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/Slave/AWS_Balancer.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/useq.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/featurefile.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wiggle.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/archive.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff3.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigwig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/gff.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bed.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bam.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/bigbed.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/sam.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/DataLoader/generic.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Filesystem.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/UserTracks/Database.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/CGI/Toggle.pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::archive.3pm Installing debian/gbrowse/man/man3/Bio::DB::SeqFeature::Store::Alias.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm Installing debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataLoader::useq.3pm Installing debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm Installing debian/gbrowse/man/man3/Bio::DB::Tagger.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm Installing debian/gbrowse/man/man3/GBrowse::ConfigData.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm Installing debian/gbrowse/man/man3/CGI::Toggle.3pm Installing debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm Installing debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm Installing debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl Installing debian/gbrowse/bin/ucsc_genes2gff.pl Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl Installing debian/gbrowse/bin/gbrowse_metadb_config.pl Installing debian/gbrowse/bin/gbrowse_clean.pl Installing debian/gbrowse/bin/wiggle2gff3.pl Installing debian/gbrowse/bin/gbrowse_grow_cloud_vol.pl Installing debian/gbrowse/bin/gbrowse_change_passwd.pl Installing debian/gbrowse/bin/bed2gff3.pl Installing debian/gbrowse/bin/gbrowse_aws_balancer.pl Installing debian/gbrowse/bin/scan_gbrowse.pl Installing debian/gbrowse/bin/gbrowse_configure_slaves.pl Installing debian/gbrowse/bin/gbrowse_slave Installing debian/gbrowse/bin/make_das_conf.pl Installing debian/gbrowse/bin/gbrowse_create_account.pl Installing debian/gbrowse/bin/load_genbank.pl Installing debian/gbrowse/bin/gbrowse_import_ucsc_db.pl Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl Installing debian/gbrowse/bin/gbrowse_sync_aws_slave.pl Installing debian/gbrowse/bin/gtf2gff3.pl #./Build apache_conf > debian/gbrowse/etc/gbrowse/gbrowse_apache2.conf perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --persistent=/var/lib/gbrowse --installetc=y WARNING: the following files are missing in your kit: contrib/ace2gff.pl contrib/AxtPairwise_convert/axt2phy.pl contrib/blast2gff.pl contrib/conf_files/01.yeast.conf contrib/conf_files/02.wormbase.conf contrib/conf_files/03.fly.conf contrib/conf_files/04.human.conf contrib/conf_files/05.embl_proxy.conf contrib/conf_files/06.biosql.conf contrib/conf_files/07.chado.conf contrib/conf_files/08.genbank.conf contrib/conf_files/09.human_karyotype.conf contrib/conf_files/index.html contrib/conf_files/wormbase.syn contrib/Coverage/INSTALL contrib/Coverage/plugin/Coverage.pm contrib/Coverage/README contrib/gdump.pl contrib/GeneFinder/genefinder/gfcode.c contrib/GeneFinder/genefinder/README contrib/GeneFinder/genefinder/readseq.c contrib/GeneFinder/genefinder/readseq.h contrib/GeneFinder/nematode_gftables/cds.hex contrib/GeneFinder/nematode_gftables/gftables contrib/GeneFinder/nematode_gftables/newnem.atg contrib/GeneFinder/nematode_gftables/newnem.codon contrib/GeneFinder/nematode_gftables/newnem.gene contrib/GeneFinder/nematode_gftables/newnem.intron3 contrib/GeneFinder/nematode_gftables/newnem.intron5 contrib/GeneFinder/nematode_gftables/ref.hist contrib/GeneFinder/nematode_gftables/zk637.atg contrib/GeneFinder/nematode_gftables/zk637.intron3 contrib/GeneFinder/nematode_gftables/zk637.intron5 contrib/GeneFinder/nematode_gftables/zk637.trinuc contrib/import_ncbi_mv_hs.pl contrib/install_macosx/BuildConfig.pm contrib/install_macosx/README.html contrib/install_macosx/README.pod contrib/install_macosx/scripts/build-gbrowse.pl contrib/install_macosx/scripts/build-libraries.pl contrib/README contrib/SynView/cgi-lib/DAS/GUS.pm contrib/SynView/cgi-lib/DAS/GUS/Segment.pm contrib/SynView/cgi-lib/DAS/GUS/Segment/Feature.pm contrib/SynView/cgi-lib/DAS/Util/SqlParser.pm contrib/SynView/gbrowse.conf/plasmodb.conf contrib/SynView/gbrowse.conf/plasmodb.xml contrib/SynView/MAL11/MAL11.conf contrib/SynView/MAL11/MAL11.fa contrib/SynView/MAL11/MAL11.gff3 contrib/SynView/README contrib/TextDumper/README contrib/TextDumper/TextDumper.pm lib/Bio/DB/SeqFeature/Store/LoadHelper.pm Please inform the author. Checking prerequisites... recommends: * Bio::DB::BigFile is not installed * Bio::DB::Sam is not installed * Bio::Das is not installed * Crypt::SSLeay is not installed * DBD::mysql is not installed * DB_File::Lock is not installed * FCGI is not installed * File::NFSLock is not installed * GD::SVG is not installed * Net::OpenID::Consumer is not installed * Net::SMTP::SSL is not installed * Parse::Apache::ServerStatus is not installed * Template is not installed * Do not worry if some "recommended" prerequisites are missing. You can install * * them later if you need the features they provide. Do not proceed with the * * install if any of "REQUIRED" prerequisites are missing. * * * * The optional Safe::World module does not currently run on Perl 5.10 or * * higher, and so cannot be installed. * ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions of the modules indicated above before proceeding with this installation Run 'Build installdeps' to install missing prerequisites. **** WARNING ***************************************************************************************** If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to create/update your user account database. See /etc/gbrowse2/GBrowse.conf.new for suggested settings. ****************************************************************************************************** NOTE: Run ./Build reconfig to change existing configuration. Now run: ./Build test ./Build demo (optional) ./Build install (as superuser/administrator) -or- ./Build install_slave (optional, for slave installations) Other useful targets: ./Build register (to register your copy of GBrowse) ./Build reconfig (to reconfigure install locations) ./Build demostop (to stop the demo) Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'GBrowse' version '2.56' ./Build --install_base=debian/gbrowse install_slave NOTE: Run ./Build reconfig to change existing configuration. Performing variable substitutions in blib/conf/aws_balancer.conf Performing variable substitutions in blib/conf/detail_select_menu.conf Performing variable substitutions in blib/conf/enzymes.txt Performing variable substitutions in blib/conf/GBrowse.conf Performing variable substitutions in blib/conf/log4perl.conf Performing variable substitutions in blib/conf/MobyServices/moby.conf Performing variable substitutions in blib/conf/pop_demo.conf Performing variable substitutions in blib/conf/renderfarm.conf Performing variable substitutions in blib/conf/slave_preload.conf Performing variable substitutions in blib/conf/submitter_plugin.conf Performing variable substitutions in blib/conf/synteny/oryza.synconf.disabled.conf Performing variable substitutions in blib/conf/synteny/rice_synteny.conf Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf Performing variable substitutions in blib/conf/themes/solid_gray_colors Performing variable substitutions in blib/conf/themes/transparent_colors Performing variable substitutions in blib/conf/themes/warm_colors Performing variable substitutions in blib/conf/volvox.conf Performing variable substitutions in blib/conf/yeast_chr1+2.conf Performing variable substitutions in blib/conf/yeast_renderfarm.conf Performing variable substitutions in blib/conf/yeast_simple.conf Performing variable substitutions in blib/htdocs/annotation_help.html Performing variable substitutions in blib/htdocs/cloud_index.html Performing variable substitutions in blib/htdocs/example_scripts/index.html Performing variable substitutions in blib/htdocs/example_scripts/README Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html Performing variable substitutions in blib/htdocs/general_help.html Performing variable substitutions in blib/htdocs/index.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.html Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html Performing variable substitutions in blib/htdocs/vbox_index.html Performing variable substitutions in blib/etc/default/gbrowse-aws-balancer Use of uninitialized value $wwwuser in substitution (s///) at /build/reproducible-path/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, line 10. Performing variable substitutions in blib/etc/default/gbrowse-slave Performing variable substitutions in blib/etc/init.d/gbrowse-aws-balancer Performing variable substitutions in blib/etc/init.d/gbrowse-slave Use of uninitialized value $wwwuser in substitution (s///) at /build/reproducible-path/gbrowse-2.56+dfsg/install_util/GBrowseInstall.pm line 871, line 20. Building GBrowse Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/gbrowse/etc/init.d/gbrowse-aws-balancer Installing debian/gbrowse/etc/init.d/gbrowse-slave Installing debian/gbrowse/etc/default/gbrowse-aws-balancer Installing debian/gbrowse/etc/default/gbrowse-slave Installing debian/gbrowse/lib/perl5/arm-linux-gnueabihf-thread-multi-64int/GBrowse/ConfigData.pm mv debian/gbrowse/lib/perl5/* debian/gbrowse/usr/share/perl5 # Remove arch dependant data mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/Bio/Graphics/Browser2/CAlign/ mkdir -p debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.32/Bio/Graphics/Browser2/ mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/Bio/Graphics/Browser2/CAlign/ mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/arm-linux-gnueabihf/perl5/5.32/Bio/Graphics/Browser2/CAlign.pm rm -rf debian/gbrowse/lib rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled.conf #Remove database (kept as separate package) rm -rf debian/gbrowse/var/lib/gbrowse/databases/* #Rename pl scripts in bin file-rename 's/\.pl//' debian/gbrowse/bin/*.pl mv debian/gbrowse/bin debian/gbrowse/usr/bin # Activate configuration files. find /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/etc -name '*.new' | xargs file-rename 's/.new//' rm -rf /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/auto # Update conf files sed -i 's/gbrowse2/gbrowse/g' /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/yeast*.conf sed -i 's/gbrowse2/gbrowse/g' /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/slave*.conf # move OpenID constumer secret to /etc/gbrowse to make it system admin configurable mv /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/usr/share/perl5/GBrowse/ConfigData.pm /build/reproducible-path/gbrowse-2.56+dfsg/debian/gbrowse/etc/gbrowse/ConfigData.pm make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_install dh_apache2 dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' #Rename due to perl extension seen as polish file-rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p mkdir -p debian/gbrowse-calign/man/man3/ mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm dh_installman rm -rf debian/gbrowse/man rm -rf debian/gbrowse-calign/man make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_lintian dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_link # Fix broken link ... even if I habe no idea what a link to a not existing dir should serve for ln -sf /var/cache/gbrowse/images debian/gbrowse/usr/share/gbrowse/htdocs/i make[1]: Leaving directory '/build/reproducible-path/gbrowse-2.56+dfsg' dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'gbrowse-data' in '../gbrowse-data_2.56+dfsg-8_all.deb'. dpkg-deb: building package 'gbrowse-calign' in '../gbrowse-calign_2.56+dfsg-8_armhf.deb'. dpkg-deb: building package 'gbrowse-calign-dbgsym' in '../gbrowse-calign-dbgsym_2.56+dfsg-8_armhf.deb'. dpkg-deb: building package 'gbrowse' in '../gbrowse_2.56+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../gbrowse_2.56+dfsg-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/830/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/830/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/830 and its subdirectories I: Current time: Tue Jan 9 04:41:23 +14 2024 I: pbuilder-time-stamp: 1704724883