I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 12 13:21:45 +14 2021 I: pbuilder-time-stamp: 1631402505 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc] I: copying [./kineticstools_0.6.1+git20200729.e3723e0+dfsg.orig.tar.xz] I: copying [./kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig._0eOrtuq/trustedkeys.kbx': General error gpgv: Signature made Thu Nov 26 12:44:52 2020 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc dpkg-source: info: extracting kineticstools in kineticstools-0.6.1+git20200729.e3723e0+dfsg dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg.orig.tar.xz dpkg-source: info: unpacking kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying man-pages.patch dpkg-source: info: applying tests-import.patch dpkg-source: info: applying verbose-testing.patch dpkg-source: info: applying deactivate-tests-requiring-unavailable-data.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying tests2to3.patch dpkg-source: info: applying man-align-cols.patch dpkg-source: info: applying specify-link-args.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22272/tmp/hooks/D01_modify_environment starting debug: Running on jtx1b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/22272/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/22272/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="1" [2]="4" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.1.4(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=4' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=dedcd79e23124135a4866b6908c0f441 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=22272 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.F59Mt3xQIt/pbuilderrc_pCcb --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.F59Mt3xQIt/b2 --logfile b2/build.log kineticstools_0.6.1+git20200729.e3723e0+dfsg-1.dsc' SUDO_GID=114 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 5 10:25 bash -rwxr-xr-x 3 root root 26052 Jul 21 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 21 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 21 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 21 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 5 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 21 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 21 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 21 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 21 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 21 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 21 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 23 2020 cat -rwxr-xr-x 1 root root 43104 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 23 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 23 2020 chown -rwxr-xr-x 1 root root 92616 Sep 23 2020 cp -rwxr-xr-x 1 root root 75524 Dec 11 2020 dash -rwxr-xr-x 1 root root 75880 Sep 23 2020 date -rwxr-xr-x 1 root root 55436 Sep 23 2020 dd -rwxr-xr-x 1 root root 59912 Sep 23 2020 df -rwxr-xr-x 1 root root 96764 Sep 23 2020 dir -rwxr-xr-x 1 root root 55012 Jul 29 09:09 dmesg lrwxrwxrwx 1 root root 8 Nov 8 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 8 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 10 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 10 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 29 09:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 27 2021 fusermount -rwxr-xr-x 1 root root 124508 Nov 10 2020 grep -rwxr-xr-x 2 root root 2346 Mar 3 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 3 2021 gzexe -rwxr-xr-x 1 root root 64212 Mar 3 2021 gzip -rwxr-xr-x 1 root root 13784 Nov 8 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 23 2020 ln -rwxr-xr-x 1 root root 35068 Feb 8 2020 login -rwxr-xr-x 1 root root 96764 Sep 23 2020 ls -rwxr-xr-x 1 root root 99940 Jul 29 09:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 23 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 29 09:09 more -rwsr-xr-x 1 root root 34400 Jul 29 09:09 mount -rwxr-xr-x 1 root root 9824 Jul 29 09:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 8 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 19 05:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 5 10:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 23 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 23 2020 rm -rwxr-xr-x 1 root root 30732 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 28 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 12 13:22 sh -> bash lrwxrwxrwx 1 root root 4 Sep 7 23:26 sh.distrib -> dash -rwxr-xr-x 1 root root 22532 Sep 23 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 23 2020 stty -rwsr-xr-x 1 root root 46704 Jul 29 09:09 su -rwxr-xr-x 1 root root 22532 Sep 23 2020 sync -rwxr-xr-x 1 root root 340872 Feb 17 2021 tar -rwxr-xr-x 1 root root 9808 Sep 28 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 23 2020 touch -rwxr-xr-x 1 root root 22496 Sep 23 2020 true -rwxr-xr-x 1 root root 9636 Feb 27 2021 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 29 09:09 umount -rwxr-xr-x 1 root root 22520 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 3 2021 uncompress -rwxr-xr-x 1 root root 96764 Sep 23 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 29 09:09 wdctl lrwxrwxrwx 1 root root 8 Nov 8 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 3 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 3 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 3 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 3 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 3 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 3 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 3 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 3 2021 zless -rwxr-xr-x 1 root root 1842 Mar 3 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 3 2021 znew I: user script /srv/workspace/pbuilder/22272/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-docutils, python3-pbcore, python3-pbcommand, python3-numpy, python3-h5py, python3-scipy, python3-uritools, python3-pytest, python3-pytest-runner, python3-pytest-xdist dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcommand; however: Package python3-pbcommand is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-uritools; however: Package python3-uritools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-hl-100{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.4-2{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libsz2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-apipkg{a} python3-attr{a} python3-avro{a} python3-biopython{a} python3-certifi{a} python3-chardet{a} python3-decorator{a} python3-distutils{a} python3-docutils{a} python3-execnet{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-iso8601{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-pytest-forked{a} python3-pytest-runner{a} python3-pytest-xdist{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-tz{a} python3-uritools{a} python3-urllib3{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments python3-renderpm wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 55.5 MB of archives. After unpacking 192 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf sgml-base all 1.30 [15.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf docutils-common all 0.16+dfsg-4 [129 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libaec0 armhf 1.0.4-1 [20.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libcurl3-gnutls armhf 7.74.0-1.3+b1 [306 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libdeflate0 armhf 1.7-1 [43.1 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf libsz2 armhf 1.0.4-1 [6616 B] Get: 72 http://deb.debian.org/debian bullseye/main armhf libhdf5-103-1 armhf 1.10.6+repack-4 [1178 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libhdf5-hl-100 armhf 1.10.6+repack-4 [80.5 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libhts3 armhf 1.11-4 [332 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.9 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf liblzf1 armhf 3.6-3 [9248 B] Get: 85 http://deb.debian.org/debian bullseye/main armhf libwebp6 armhf 0.6.1-2.1 [226 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libtiff5 armhf 4.2.0-1 [271 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.2 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Get: 93 http://deb.debian.org/debian bullseye/main armhf python3-apipkg all 1.5-7 [9628 B] Get: 94 http://deb.debian.org/debian bullseye/main armhf python3-attr all 20.3.0-1 [52.9 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf python3-avro all 1.10.1+dfsg-1 [31.5 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf python3-reportlab-accel armhf 3.5.59-2 [37.4 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [413 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf python3-reportlab all 3.5.59-2 [575 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf python3-biopython armhf 1.78+dfsg-4 [1383 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf python3-certifi all 2020.6.20-1 [151 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf python3-chardet all 4.0.0-1 [99.0 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf python3-decorator all 4.4.2-2 [15.8 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf python3-roman all 2.0.0-5 [9064 B] Get: 106 http://deb.debian.org/debian bullseye/main armhf python3-docutils all 0.16+dfsg-4 [384 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf python3-execnet all 1.7.1-4 [41.1 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf python3-six all 1.16.0-2 [17.5 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf python3-h5py-serial armhf 2.10.0-9+b2 [598 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf python3-h5py all 2.10.0-9 [11.4 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf python3-idna all 2.10-1 [37.4 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf python3-zipp all 1.0.0-3 [6060 B] Get: 114 http://deb.debian.org/debian bullseye/main armhf python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf python3-iniconfig all 1.1.1-1 [6308 B] Get: 116 http://deb.debian.org/debian bullseye/main armhf python3-iso8601 all 0.1.13-1 [14.0 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf python3-pyparsing all 2.4.7-1 [109 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf python3-packaging all 20.9-2 [33.5 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf python3-tz all 2021.1-1 [34.8 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf python3-pbcommand all 2.1.1+git20201023.cc0ed3d-1 [90.9 kB] Get: 123 http://deb.debian.org/debian bullseye/main armhf python3-pysam armhf 0.15.4+ds-3+b2 [1381 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf python3-pbcore all 1.7.1+git20200430.a127b1e+dfsg-1 [2881 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf python3-pluggy all 0.13.0-6 [22.3 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf python3-py all 1.10.0-1 [94.2 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf python3-toml all 0.10.1-1 [15.9 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf python3-pytest all 6.0.2-2 [211 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf python3-pytest-forked all 1.3.0-1 [7432 B] Get: 130 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf python3-pytest-runner all 2.11.1-1.2 [8528 B] Get: 132 http://deb.debian.org/debian bullseye/main armhf python3-pytest-xdist all 2.2.0-1 [43.5 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf python3-scipy armhf 1.6.0-2 [11.3 MB] Get: 134 http://deb.debian.org/debian bullseye/main armhf python3-uritools all 3.0.0-2 [28.0 kB] Fetched 55.5 MB in 6s (9822 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_armhf.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:armhf. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../6-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:armhf (3.9.2-1) ... Setting up libexpat1:armhf (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:armhf. Preparing to unpack .../4-libmpdec3_2.5.1-1_armhf.deb ... Unpacking libmpdec3:armhf (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../6-libreadline8_8.1-1_armhf.deb ... Unpacking libreadline8:armhf (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:armhf. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_armhf.deb ... Unpacking libpython3.9-stdlib:armhf (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_armhf.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20710 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_1.1.1k-1_armhf.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../009-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../015-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../016-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../017-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../018-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../019-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../020-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../021-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../022-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../023-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../024-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../026-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../027-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../028-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../029-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../030-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../031-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../032-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../033-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../034-docutils-common_0.16+dfsg-4_all.deb ... Unpacking docutils-common (0.16+dfsg-4) ... Selecting previously unselected package libaec0:armhf. Preparing to unpack .../035-libaec0_1.0.4-1_armhf.deb ... Unpacking libaec0:armhf (1.0.4-1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../036-libblas3_3.9.0-3_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../037-libbrotli1_1.0.9-2+b2_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b2) ... Selecting previously unselected package libmd0:armhf. Preparing to unpack .../038-libmd0_1.0.3-3_armhf.deb ... Unpacking libmd0:armhf (1.0.3-3) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../039-libbsd0_0.11.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.11.3-1) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../040-libsasl2-modules-db_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../041-libsasl2-2_2.1.27+dfsg-2.1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:armhf. Preparing to unpack .../042-libldap-2.4-2_2.4.57+dfsg-3_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../043-libnghttp2-14_1.43.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.43.0-1) ... 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Selecting previously unselected package python3-pytest-xdist. Preparing to unpack .../113-python3-pytest-xdist_2.2.0-1_all.deb ... Unpacking python3-pytest-xdist (2.2.0-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../114-python3-scipy_1.6.0-2_armhf.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-uritools. Preparing to unpack .../115-python3-uritools_3.0.0-2_all.deb ... Unpacking python3-uritools (3.0.0-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up liblcms2-2:armhf (2.12~rc1-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libpsl5:armhf (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:armhf (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up libdeflate0:armhf (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libaec0:armhf (1.0.4-1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up liblzf1:armhf (3.6-3) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libimagequant0:armhf (2.12.2-1.1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:armhf (0.6.1-2.1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up sgml-base (1.30) ... Setting up libtiff5:armhf (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up openssl (1.1.1k-1) ... Setting up libwebpmux3:armhf (0.6.1-2.1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libsz2:armhf (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:armhf (0.6.1-2.1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:armhf (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:armhf (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:armhf (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:armhf (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-iso8601 (0.1.13-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-avro (1.10.1+dfsg-1) ... Setting up python3-reportlab-accel:armhf (3.5.59-2) ... Setting up python3-idna (2.10-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-apipkg (1.5-7) ... Setting up python3-uritools (3.0.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-pytest-runner (2.11.1-1.2) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-execnet (1.7.1-4) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up python3-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) ... Setting up python3-h5py (2.10.0-9) ... Setting up python3-pbcommand (2.1.1+git20201023.cc0ed3d-1) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-pytest-forked (1.3.0-1) ... Setting up python3-pytest-xdist (2.2.0-1) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_source.changes dpkg-buildpackage: info: source package kineticstools dpkg-buildpackage: info: source version 0.6.1+git20200729.e3723e0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache rm -rf kineticsTools.egg-info rm -f nosetests.xml rm -f bin/ipdSummary make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/summarizeModifications.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ResultWriter.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ReferenceUtils.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteCommon.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdSummary.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ModificationDecode.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/sharedArray.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/pipelineTools.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/WorkerProcess.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MultiSiteDetection.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/ipdModel.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/KineticWorker.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools copying kineticsTools/loader.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal copying kineticsTools/internal/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks copying kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks running egg_info creating kineticsTools.egg-info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt writing manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources copying kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources running build_ext building 'kineticsTools/tree_predict' extension creating build creating build/temp.linux-armhf-3.9 creating build/temp.linux-armhf-3.9/kineticsTools arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c kineticsTools/tree_predict.c -o build/temp.linux-armhf-3.9/kineticsTools/tree_predict.o -O3 -shared -std=c99 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/kineticsTools/tree_predict.o -o /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-arm-linux-gnueabihf.so -lc debian/rules override_dh_auto_test make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» cp kineticsTools/ipdSummary.py bin/ipdSummary chmod +x bin/ipdSummary PYTHONPATH=/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg PATH=$PATH:/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/bin dh_auto_test I: pybuild base:232: cd /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg, configfile: pytest.ini plugins: xdist-2.2.0, forked-1.3.0 gw0 I / gw1 I / gw2 I / gw3 I [gw0] linux Python 3.9.2 cwd: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw1] linux Python 3.9.2 cwd: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw2] linux Python 3.9.2 cwd: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw3] linux Python 3.9.2 cwd: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build [gw0] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw2] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw1] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] [gw3] Python 3.9.2 (default, Feb 28 2021, 17:03:44) -- [GCC 10.2.1 20210110] gw0 [19] / gw1 [19] / gw2 [19] / gw3 [19] scheduling tests via LoadScopeScheduling test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_ReferenceUtils.py::TestReferenceUtils::test_bam [gw2] [ 5%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig test/test_ipdModel.py::TestIpdModel::test_refLength [gw3] [ 10%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_refLength test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli [gw2] [ 15%] SKIPPED test/test_gather_bigwig.py::TestGatherBigwig::test_gather_bigwig_cli test/test_loader.py::test_basic [gw2] [ 21%] PASSED test/test_loader.py::test_basic [gw0] [ 26%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_bam test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset [gw0] [ 31%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_dataset test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow [gw0] [ 36%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_parseReferenceWindow test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows [gw0] [ 42%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_createReferenceWindows test/test_integration.py::TestKineticsTools::test_help test/test_loader.py::test_path [gw2] [ 47%] PASSED test/test_loader.py::test_path [gw3] [ 52%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_snippetFunc test/test_loader.py::test_path_with_prefixed_chem [gw2] [ 57%] PASSED test/test_loader.py::test_path_with_prefixed_chem test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow test/test_loader.py::test_getResourcePathSpec [gw3] [ 63%] SKIPPED test/test_ipdModel.py::TestIpdModel::test_getReferenceWindow [gw2] [ 68%] PASSED test/test_loader.py::test_getResourcePathSpec test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks [gw0] [ 73%] SKIPPED test/test_ReferenceUtils.py::TestReferenceUtils::test_enumerateChunks test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw3] [ 78%] SKIPPED test/test_summarize_modifications.py::TestSummarizeModifications::test_integration [gw1] [ 84%] PASSED test/test_integration.py::TestKineticsTools::test_help test/test_integration.py::TestKineticsTools::test_ecoli_first_50k [gw1] [ 89%] SKIPPED test/test_integration.py::TestKineticsTools::test_ecoli_first_50k test/test_outputs.py::TestOutputs::test_csv_output [gw1] [ 94%] SKIPPED test/test_outputs.py::TestOutputs::test_csv_output test/test_outputs.py::TestOutputs::test_bigwig [gw1] [100%] SKIPPED test/test_outputs.py::TestOutputs::test_bigwig =============================== warnings summary =============================== /usr/lib/python3/dist-packages/_pytest/junitxml.py:446 /usr/lib/python3/dist-packages/_pytest/junitxml.py:446: PytestDeprecationWarning: The 'junit_family' default value will change to 'xunit2' in pytest 6.0. See: https://docs.pytest.org/en/stable/deprecations.html#junit-family-default-value-change-to-xunit2 for more information. _issue_warning_captured(deprecated.JUNIT_XML_DEFAULT_FAMILY, config.hook, 2) /usr/lib/python3/dist-packages/avro/schema.py:1249: 20 warnings /usr/lib/python3/dist-packages/avro/schema.py:1249: DeprecationWarning: `Parse` is deprecated in avro 1.10. Please use `parse` (lowercase) instead. warnings.warn("`Parse` is deprecated in avro 1.10. " -- Docs: https://docs.pytest.org/en/stable/warnings.html - generated xml file: /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml - ============================= slowest 20 durations ============================= 1.66s call .pybuild/cpython3_3.9_kineticstools/build/test/test_integration.py::TestKineticsTools::test_help 0.01s setup .pybuild/cpython3_3.9_kineticstools/build/test/test_ipdModel.py::TestIpdModel::test_snippetFunc (18 durations < 0.005s hidden. Use -vv to show these durations.) ================== 5 passed, 14 skipped, 21 warnings in 4.23s ================== make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: ingresso nella directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» dh_auto_install I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools running install running build running build_py running egg_info writing kineticsTools.egg-info/PKG-INFO writing dependency_links to kineticsTools.egg-info/dependency_links.txt writing entry points to kineticsTools.egg-info/entry_points.txt writing requirements to kineticsTools.egg-info/requires.txt writing top-level names to kineticsTools.egg-info/top_level.txt reading manifest file 'kineticsTools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'kineticsTools.egg-info/SOURCES.txt' running build_ext running install_lib creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9 creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/nosetests.xml -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/summarizeModifications.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ResultWriter.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tree_predict.cpython-39-arm-linux-gnueabihf.so -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/resources/unknown.npz.gz -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/resources copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ReferenceUtils.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/internal/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteCommon.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdSummary.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ModificationDecode.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/BasicLdaEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/sharedArray.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/pipelineTools.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MixtureEstimationMethods.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/loader.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/__init__.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ipdModel.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/sharedArray.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/__pycache__/ReferenceUtils.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/WorkerProcess.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MultiSiteDetection.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/PositiveControlEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__init__.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/gather_bigwig.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks creating /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/gather_bigwig.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/tasks/__pycache__/__init__.cpython-39.pyc -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__pycache__ copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/ipdModel.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/MedakaLdaEnricher.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/KineticWorker.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools copying /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/.pybuild/cpython3_3.9_kineticstools/build/kineticsTools/loader.py -> /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/summarizeModifications.py to summarizeModifications.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ResultWriter.py to ResultWriter.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ReferenceUtils.py to ReferenceUtils.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/internal/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteCommon.py to MultiSiteCommon.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdSummary.py to ipdSummary.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ModificationDecode.py to ModificationDecode.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/BasicLdaEnricher.py to BasicLdaEnricher.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/sharedArray.py to sharedArray.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/pipelineTools.py to pipelineTools.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MixtureEstimationMethods.py to MixtureEstimationMethods.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/WorkerProcess.py to WorkerProcess.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MultiSiteDetection.py to MultiSiteDetection.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/PositiveControlEnricher.py to PositiveControlEnricher.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/tasks/gather_bigwig.py to gather_bigwig.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/ipdModel.py to ipdModel.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/MedakaLdaEnricher.py to MedakaLdaEnricher.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/KineticWorker.py to KineticWorker.cpython-39.pyc byte-compiling /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools/loader.py to loader.cpython-39.pyc running install_egg_info Copying kineticsTools.egg-info to /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/lib/python3.9/dist-packages/kineticsTools-0.7.0.egg-info Skipping SOURCES.txt running install_scripts Installing ipdSummary script to /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/bin Installing summarizeModifications script to /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/python3-kineticstools/usr/bin mkdir -p /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/bin mv debian/python3-kineticstools/usr/bin/* /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/bin mkdir -p /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/share/man//man1 rst2man doc/manual.rst > /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools/usr/share/man//man1/ipdSummary.1 doc/manual.rst:53: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported doc/manual.rst:55: (WARNING/2) "math" role not supported mkdir -p debian/kineticstools-data/usr/share/kineticstools # There is probably a simpler way, but that should do for the moment. set -e \ ; for libdir in debian/python3-kineticstools/usr/lib/python3.* \ ; do rm -rf /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; mv ${libdir}/dist-packages/kineticsTools/resources /build/kineticstools-0.6.1+git20200729.e3723e0+dfsg/debian/kineticstools-data/usr/share/kineticstools/resources \ ; done rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml make[1]: uscita dalla directory «/build/kineticstools-0.6.1+git20200729.e3723e0+dfsg» dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-kineticstools: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-kineticstools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: generazione del pacchetto "kineticstools" in "../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_all.deb". dpkg-deb: generazione del pacchetto "kineticstools-data" in "../kineticstools-data_0.6.1+git20200729.e3723e0+dfsg-1_all.deb". dpkg-deb: generazione del pacchetto "python3-kineticstools" in "../python3-kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_armhf.deb". dpkg-deb: generazione del pacchetto "python3-kineticstools-dbgsym" in "../python3-kineticstools-dbgsym_0.6.1+git20200729.e3723e0+dfsg-1_armhf.deb". dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kineticstools_0.6.1+git20200729.e3723e0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/22272/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/22272/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22272 and its subdirectories I: Current time: Sun Sep 12 13:25:48 +14 2021 I: pbuilder-time-stamp: 1631402748