I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 15 16:23:48 +14 2022 I: pbuilder-time-stamp: 1663208628 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hmmer_3.2.1+dfsg-1.dsc] I: copying [./hmmer_3.2.1+dfsg.orig.tar.xz] I: copying [./hmmer_3.2.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Aug 24 21:25:36 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hmmer_3.2.1+dfsg-1.dsc dpkg-source: info: extracting hmmer in hmmer-3.2.1+dfsg dpkg-source: info: unpacking hmmer_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.2.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11596/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/11596/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/11596/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=4ff39d2038db493e8dc34be0e636b873 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=11596 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.G9NaCXafWU/pbuilderrc_bKEo --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.G9NaCXafWU/b2 --logfile b2/build.log hmmer_3.2.1+dfsg-1.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://85.184.249.68:3128 I: uname -a Linux i-capture-the-hostname 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 18 2019 bash -rwxr-xr-x 3 root root 38984 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 43744 Mar 1 2019 cat -rwxr-xr-x 1 root root 64320 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 64288 Mar 1 2019 chmod -rwxr-xr-x 1 root root 72512 Mar 1 2019 chown -rwxr-xr-x 1 root root 146880 Mar 1 2019 cp -rwxr-xr-x 1 root root 121464 Jan 18 2019 dash -rwxr-xr-x 1 root root 109408 Mar 1 2019 date -rwxr-xr-x 1 root root 76712 Mar 1 2019 dd -rwxr-xr-x 1 root root 93744 Mar 1 2019 df -rwxr-xr-x 1 root root 138856 Mar 1 2019 dir -rwxr-xr-x 1 root root 84288 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 35424 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 6 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 27 2018 hostname -rwxr-xr-x 1 root root 68552 Mar 1 2019 ln -rwxr-xr-x 1 root root 56760 Jul 27 2018 login -rwxr-xr-x 1 root root 138856 Mar 1 2019 ls -rwxr-xr-x 1 root root 108624 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 89088 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 68544 Mar 1 2019 mknod -rwxr-xr-x 1 root root 43808 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 10 2019 more -rwsr-xr-x 1 root root 51280 Jan 10 2019 mount -rwxr-xr-x 1 root root 14408 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138728 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68416 Mar 1 2019 rm -rwxr-xr-x 1 root root 47776 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 15 16:23 sh -> bash lrwxrwxrwx 1 root root 4 Sep 10 04:46 sh.distrib -> dash -rwxr-xr-x 1 root root 39552 Mar 1 2019 sleep -rwxr-xr-x 1 root root 80672 Mar 1 2019 stty -rwsr-xr-x 1 root root 63568 Jan 10 2019 su -rwxr-xr-x 1 root root 35488 Mar 1 2019 sync -rwxr-xr-x 1 root root 445560 Apr 24 2019 tar -rwxr-xr-x 1 root root 14440 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 97152 Mar 1 2019 touch -rwxr-xr-x 1 root root 35424 Mar 1 2019 true -rwxr-xr-x 1 root root 14328 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 10 2019 umount -rwxr-xr-x 1 root root 39584 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138856 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/11596/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libdivsufsort-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 19.1 MB of archives. After unpacking 69.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libdivsufsort3 amd64 2.0.1-4 [44.5 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libdivsufsort-dev amd64 2.0.1-4 [27.4 kB] Fetched 19.1 MB in 0s (68.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../27-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../33-libdivsufsort3_2.0.1-4_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-4) ... Selecting previously unselected package libdivsufsort-dev:amd64. Preparing to unpack .../34-libdivsufsort-dev_2.0.1-4_amd64.deb ... Unpacking libdivsufsort-dev:amd64 (2.0.1-4) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libdivsufsort3:amd64 (2.0.1-4) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libdivsufsort-dev:amd64 (2.0.1-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/hmmer-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' dh_clean debian/rules build dh build dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' AUTOHEADER=true dh_autoreconf make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: Configuring HMMER3 for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for C compiler vendor... gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking HMMER configuration: compiler: gcc -g -O2 -ffile-prefix-map=/build/hmmer-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -pthread host: x86_64-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now libraries: DP implementation: sse Do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' dh_auto_build make -j16 make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' SUBDIR easel make[2]: Entering directory '/build/hmmer-3.2.1+dfsg/easel' CC easel.o CC esl_alloc.o CC esl_alphabet.o CC esl_arr2.o CC esl_arr3.o CC esl_buffer.o CC esl_composition.o CC esl_cluster.o CC esl_cpu.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_dsqdata.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_gencode.o CC esl_getopts.o CC esl_gev.o CC esl_gumbel.o CC esl_heap.o CC esl_histogram.o CC esl_hmm.o CC esl_huffman.o CC esl_hyperexp.o CC esl_keyhash.o CC esl_mem.o CC esl_minimizer.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_phylip.o CC esl_msafile_clustal.o CC esl_msafile_psiblast.o CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_quicksort.o CC esl_random.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_red_black.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_threads.o CC esl_tree.o CC esl_vectorops.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o CC esl_sse.o CC esl_avx.o CC esl_avx512.o CC esl_neon.o CC esl_vmx.o AR libeasel.a SUBDIR miniapps make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/easel/miniapps' GEN esl-afetch GEN esl-alimanip GEN esl-alimap GEN esl-alimask GEN esl-alimerge GEN esl-alipid GEN esl-alirev GEN esl-alistat GEN esl-compalign GEN esl-compstruct GEN esl-construct GEN esl-histplot GEN esl-reformat GEN esl-mask GEN esl-selectn GEN esl-seqrange GEN esl-seqstat GEN esl-sfetch GEN esl-shuffle GEN esl-ssdraw GEN esl-translate GEN esl-weight make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/easel/miniapps' make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg/easel' SUBDIR src make[2]: Entering directory '/build/hmmer-3.2.1+dfsg/src' CC alimask.o CC build.o CC cachedb.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o CC generic_fwdback.o CC generic_fwdback_chk.o CC generic_fwdback_banded.o CC generic_null2.o CC generic_msv.o CC generic_stotrace.o CC generic_optacc.o CC generic_viterbi.o CC generic_vtrace.o CC h2_io.o CC heatmap.o CC hmmlogo.o CC hmmdmstr.o CC hmmdwrkr.o CC hmmdutils.o CC hmmer.o CC logsum.o CC modelconfig.o CC modelstats.o CC mpisupport.o CC seqmodel.o CC tracealign.o CC p7_alidisplay.o CC p7_bg.o CC p7_builder.o CC p7_domaindef.o CC p7_gbands.o CC p7_gmx.o CC p7_gmxb.o CC p7_gmxchk.o CC p7_hmm.o CC p7_hmmcache.o CC p7_hmmfile.o CC p7_hmmwindow.o CC p7_pipeline.o CC p7_prior.o CC p7_profile.o CC p7_spensemble.o CC p7_tophits.o CC p7_trace.o CC p7_scoredata.o CC hmmpgmd2msa.o CC fm_alphabet.o CC fm_general.o CC fm_sse.o CC fm_ssv.o CC hmmalign.o CC hmmbuild.o CC hmmconvert.o CC hmmemit.o CC hmmfetch.o p7_tophits.c: In function 'p7_tophits_GetMaxPositionLength': p7_tophits.c:504:28: warning: '%ld' directive writing between 1 and 19 bytes into a region of size 13 [-Wformat-overflow=] n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); ^~~ p7_tophits.c:504:29: note: format string is defined here n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); p7_tophits.c:504:28: note: directive argument in the range [1, 9223372036854775807] n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); ^~~ In file included from /usr/include/stdio.h:873, from ../easel/easel.h:22, from p7_tophits.c:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 20 bytes into a destination of size 13 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CC hmmpgmd.o CC hmmpress.o CC hmmscan.o CC hmmsearch.o CC hmmsim.o CC hmmstat.o CC jackhmmer.o CC phmmer.o CC nhmmer.o CC nhmmscan.o CC makehmmerdb.o CC hmmc2.o CC hmmerfm-exactmatch.o AR libhmmer-src.stamp SUBDIR impl_sse make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/src/impl_sse' CC decoding.o CC fwdback.o CC io.o CC ssvfilter.o CC msvfilter.o CC null2.o CC optacc.o CC stotrace.o CC vitfilter.o CC p7_omx.o CC p7_oprofile.o CC mpi.o AR libhmmer-impl.stamp make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/src/impl_sse' GEN hmmbuild GEN alimask GEN hmmalign GEN hmmconvert GEN hmmemit GEN hmmfetch GEN hmmlogo GEN hmmpgmd GEN hmmscan GEN hmmpress GEN hmmsearch GEN hmmsim GEN hmmstat GEN jackhmmer GEN phmmer GEN nhmmer GEN nhmmscan GEN makehmmerdb GEN hmmc2 GEN hmmerfm-exactmatch make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg/src' SUBDIR profmark make[2]: Entering directory '/build/hmmer-3.2.1+dfsg/profmark' CC create-profmark.o CC rocplot.o GEN rocplot GEN create-profmark make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg/profmark' make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' make check make[2]: Entering directory '/build/hmmer-3.2.1+dfsg' SUBDIR easel make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/easel' GEN easel_utest GEN esl_alloc_utest GEN esl_alphabet_utest GEN esl_buffer_utest ./esl_buffer.c: In function 'main': ./esl_buffer.c:2357:31: warning: '.gz' directive output may be truncated writing 3 bytes into a region of size between 1 and 32 [-Wformat-truncation=] snprintf(gzipfile, 32, "%s.gz", tmpfile); ^~~ ./esl_buffer.c:2357:3: note: 'snprintf' output between 4 and 35 bytes into a destination of size 32 snprintf(gzipfile, 32, "%s.gz", tmpfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GEN esl_cluster_utest GEN esl_cpu_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_gencode_utest GEN esl_getopts_utest GEN esl_gumbel_utest GEN esl_heap_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_keyhash_utest GEN esl_mem_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_normal_utest GEN esl_quicksort_utest GEN esl_random_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest ./esl_sqio.c: In function 'main': ./esl_sqio.c:1851:23: warning: '.ssi' directive writing 4 bytes into a region of size between 1 and 32 [-Wformat-overflow=] sprintf(ssifile, "%s.ssi", tmpfile); ^~~~ ./esl_sqio.c:1851:3: note: 'sprintf' output between 5 and 36 bytes into a destination of size 32 sprintf(ssifile, "%s.ssi", tmpfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest GEN esl_sse_utest GEN esl_avx_utest GEN esl_avx512_utest GEN esl_neon_utest GEN esl_vmx_utest SUBDIR miniapps make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/easel' SUBDIR src make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/src' SUBDIR impl_sse GEN build_utest GEN generic_fwdback_utest GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_stotrace_utest GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest ./p7_tophits.c: In function 'p7_tophits_GetMaxPositionLength': ./p7_tophits.c:504:28: warning: '%ld' directive writing between 1 and 19 bytes into a region of size 13 [-Wformat-overflow=] n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); ^~~ ./p7_tophits.c:504:29: note: format string is defined here n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); ./p7_tophits.c:504:28: note: directive argument in the range [1, 9223372036854775807] n = sprintf (buffer, "%" PRId64 "", h->unsrt[i].dcl[0].iali); ^~~ In file included from /usr/include/stdio.h:873, from ../easel/easel.h:22, from ./p7_tophits.c:16: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 20 bytes into a destination of size 13 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest CC itest_brute.o GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/build/hmmer-3.2.1+dfsg/src/impl_sse' GEN decoding_utest GEN fwdback_utest GEN io_utest GEN msvfilter_utest GEN null2_utest GEN optacc_utest GEN stotrace_utest GEN vitfilter_utest make[4]: Leaving directory '/build/hmmer-3.2.1+dfsg/src/impl_sse' make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/src' SUBDIR easel make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/easel' SUBDIR miniapps SUBDIR testsuite make[4]: Entering directory '/build/hmmer-3.2.1+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ alphabet-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ avx-utest] ... ok. exercise 4 [ buffer-utest] ... ok. exercise 5 [ cluster-utest] ... ok. exercise 6 [ cpu-utest] ... ok. exercise 7 [ dirichlet-utest] ... ok. exercise 8 [ distance-utest] ... ok. exercise 9 [ dmatrix-utest] ... ok. exercise 10 [ dsqdata-utest] ... ok. exercise 11 [ easel-utest] ... ok. exercise 12 [ exponential-utest] ... ok. exercise 13 [ fileparser-utest] ... ok. exercise 14 [ gamma-utest] ... ok. exercise 15 [ gencode-utest] ... ok. exercise 16 [ getopts-utest] ... ok. exercise 17 [ gumbel-utest] ... ok. exercise 18 [ heap-utest] ... ok. exercise 19 [ histogram-utest] ... ok. exercise 20 [ huffman-utest] ... ok. exercise 21 [ hyperexp-utest] ... ok. exercise 22 [ keyhash-utest] ... ok. exercise 23 [ mem-utest] ... ok. exercise 24 [ msa-utest] ... ok. exercise 25 [ msacluster-utest] ... ok. exercise 26 [ msafile] ... ok. exercise 27 [ msafile2] ... ok. exercise 28 [ msafile-a2m] ... ok. exercise 29 [ msafile-afa] ... ok. exercise 30 [ msafile-clustal] ... ok. exercise 31 [ msafile-phylip] ... ok. exercise 32 [ msafile-psiblast] ... ok. exercise 33 [ msafile-selex] ... ok. exercise 34 [ msafile-stockholm] ... ok. exercise 35 [ msaweight-utest] ... ok. exercise 36 [ neon-utest] ... ok. exercise 37 [ normal-utest] ... ok. exercise 38 [ quicksort-utest] ... ok. exercise 39 [ random-utest] ... ok. exercise 40 [ randomseq-utest] ... ok. exercise 41 [ ratematrix-utest] ... ok. exercise 42 [ recorder-utest] ... ok. exercise 43 [ red_black-utest] ... ok. exercise 44 [ regexp-utest] ... ok. exercise 45 [ rootfinder-utest] ... ok. exercise 46 [ scorematrix-utest] ... ok. exercise 47 [ sq-utest] ... ok. exercise 48 [ sqio-utest] ... ok. exercise 49 [ sse-utest] ... ok. exercise 50 [ ssi-utest] ... ok. exercise 51 [ stack-utest] ... ok. exercise 52 [ stats-utest] ... ok. exercise 53 [ stretchexp-utest] ... ok. exercise 54 [ tree-utest] ... ok. exercise 55 [ vectorops-utest] ... ok. exercise 56 [ vmx-utest] ... ok. exercise 57 [ weibull-utest] ... ok. exercise 58 [ wuss-utest] ... ok. exercise 59 [ e2] ... ok. exercise 60 [ degen-residues] ... ok. exercise 61 [ ncbi-indices] ... ok. exercise 62 [ blank-gf] ... ok. exercise 63 [ esl-translate] ... ok. exercise 64 [ esl-afetch] ... ok. exercise 65 [ esl-alimanip] ... ok. exercise 66 [ esl-alimap] ... ok. exercise 67 [ esl-alimask] ... ok. exercise 68 [ esl-alimerge] ... ok. exercise 69 [ esl-alistat] ... ok. exercise 70 [ esl-compalign] ... ok. exercise 71 [ esl-construct] ... ok. exercise 72 [ esl-mask] ... ok. exercise 73 [ esl-seqrange] ... ok. exercise 74 [ esl-shuffle] ... ok. exercise 75 [ esl-ssdraw] ... ok. All 75 exercises at level <= 2 passed. System information: Thu Sep 15 16:25:44 +14 2022 Linux i-capture-the-hostname 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux make[4]: Leaving directory '/build/hmmer-3.2.1+dfsg/easel/testsuite' make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/easel' SUBDIR testsuite make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ logsum] ... ok. exercise 8 [ modelconfig] ... ok. exercise 9 [ seqmodel] ... ok. exercise 10 [ p7_alidisplay] ... ok. exercise 11 [ p7_bg] ... ok. exercise 12 [ p7_gmx] ... ok. exercise 13 [ p7_hmm] ... ok. exercise 14 [ p7_hmmfile] ... ok. exercise 15 [ p7_profile] ... ok. exercise 16 [ p7_tophits] ... ok. exercise 17 [ p7_trace] ... ok. exercise 18 [ p7_scoredata] ... ok. exercise 19 [ decoding] ... ok. exercise 20 [ fwdback] ... ok. exercise 21 [ io] ... ok. exercise 22 [ msvfilter] ... ok. exercise 23 [ null2] ... ok. exercise 24 [ optacc] ... ok. exercise 25 [ stotrace] ... ok. exercise 26 [ vitfilter] ... ok. exercise 27 [ hmmalign] ... ok. exercise 28 [ hmmalign/-h] ... ok. exercise 29 [ hmmalign/-o] ... ok. exercise 30 [ hmmalign/--mapali] ... ok. exercise 31 [ hmmalign/--trim] ... ok. exercise 32 [ hmmalign/--amino] ... ok. exercise 33 [ hmmalign/--informat] ... ok. exercise 34 [ hmmalign/--outformat] ... ok. exercise 35 [ hmmbuild] ... ok. exercise 36 [ build/-h] ... ok. exercise 37 [ build/-n] ... ok. exercise 38 [ build/-o] ... ok. exercise 39 [ build/-O] ... ok. exercise 40 [ build/--amino] ... ok. exercise 41 [ build/--dna] ... ok. exercise 42 [ build/--rna] ... ok. exercise 43 [ build/--fast] ... ok. exercise 44 [ build/--hand] ... ok. exercise 45 [ build/--symfrac] ... ok. exercise 46 [ build/--fragthresh] ... ok. exercise 47 [ build/--wpb] ... ok. exercise 48 [ build/--wgsc] ... ok. exercise 49 [ build/--wblosum] ... ok. exercise 50 [ build/--wnone] ... ok. exercise 51 [ build/--wid] ... ok. exercise 52 [ build/--eent] ... ok. exercise 53 [ build/--eclust] ... ok. exercise 54 [ build/--enone] ... ok. exercise 55 [ build/--eset] ... ok. exercise 56 [ build/--ere] ... ok. exercise 57 [ build/--esigma] ... ok. exercise 58 [ build/--eid] ... ok. exercise 59 [ build/--pnone] ... ok. exercise 60 [ build/--plaplace] ... ok. exercise 61 [ build/--EmL] ... ok. exercise 62 [ build/--EmN] ... ok. exercise 63 [ build/--EvL] ... ok. exercise 64 [ build/--EvN] ... ok. exercise 65 [ build/--EfL] ... ok. exercise 66 [ build/--EfN] ... ok. exercise 67 [ build/--Eft] ... ok. exercise 68 [ build/--informat] ... ok. exercise 69 [ build/--seed] ... ok. exercise 70 [ search] ... ok. exercise 71 [ search/-h] ... ok. exercise 72 [ search/-o] ... ok. exercise 73 [ search/-A] ... ok. exercise 74 [ search/--tblout] ... ok. exercise 75 [ search/--domtblout] ... ok. exercise 76 [ search/--pfamtblout] ... ok. exercise 77 [ search/--acc] ... ok. exercise 78 [ search/--noali] ... ok. exercise 79 [ search/--notextw] ... ok. exercise 80 [ search/--textw] ... ok. exercise 81 [ search/-E] ... ok. exercise 82 [ search/-T] ... ok. exercise 83 [ search/--domE] ... ok. exercise 84 [ search/--domT] ... ok. exercise 85 [ search/--incE] ... ok. exercise 86 [ search/--incT] ... ok. exercise 87 [ search/--incdomE] ... ok. exercise 88 [ search/--incdomT] ... ok. exercise 89 [ search/--cut_ga] ... ok. exercise 90 [ search/--cut_nc] ... ok. exercise 91 [ search/--cut_tc] ... ok. exercise 92 [ search/--max] ... ok. exercise 93 [ search/--F1] ... ok. exercise 94 [ search/--F2] ... ok. exercise 95 [ search/--F3] ... ok. exercise 96 [ search/--nobias] ... ok. exercise 97 [ search/--nonull2] ... ok. exercise 98 [ search/-Z] ... ok. exercise 99 [ search/--domZ] ... ok. exercise 100 [ search/--seed] ... ok. exercise 101 [ search/--tformat] ... ok. exercise 102 [ hmmscan] ... ok. exercise 103 [ scan/-h] ... ok. exercise 104 [ scan/-o] ... ok. exercise 105 [ scan/--tblout] ... ok. exercise 106 [ scan/--domtblout] ... ok. exercise 107 [ scan/--pfamtblout] ... ok. exercise 108 [ scan/--acc] ... ok. exercise 109 [ scan/--noali] ... ok. exercise 110 [ scan/--notextw] ... ok. exercise 111 [ scan/--textw] ... ok. exercise 112 [ scan/-E] ... ok. exercise 113 [ scan/-T] ... ok. exercise 114 [ scan/--domE] ... ok. exercise 115 [ scan/--domT] ... ok. exercise 116 [ scan/--incE] ... ok. exercise 117 [ scan/--incT] ... ok. exercise 118 [ scan/--incdomE] ... ok. exercise 119 [ scan/--incdomT] ... ok. exercise 120 [ scan/--incdomT] ... ok. exercise 121 [ scan/--cut_ga] ... ok. exercise 122 [ scan/--cut_nc] ... ok. exercise 123 [ scan/--cut_tc] ... ok. exercise 124 [ scan/--max] ... ok. exercise 125 [ scan/--F1] ... ok. exercise 126 [ scan/--F2] ... ok. exercise 127 [ scan/--F3] ... ok. exercise 128 [ scan/--nobias] ... ok. exercise 129 [ scan/--nonull2] ... ok. exercise 130 [ scan/-Z] ... ok. exercise 131 [ scan/--domZ] ... ok. exercise 132 [ scan/--seed] ... ok. exercise 133 [ scan/--qformat] ... ok. exercise 134 [ scan/--cpu] ... ok. exercise 135 [ jackhmmer] ... ok. exercise 136 [ j/-h] ... ok. exercise 137 [ j/-N] ... ok. exercise 138 [ j/-o] ... ok. exercise 139 [ j/-A] ... ok. exercise 140 [ j/--tblout] ... ok. exercise 141 [ j/--domtblout] ... ok. exercise 142 [ j/--chkhmm] ... ok. exercise 143 [ j/--chkali] ... ok. exercise 144 [ j/--acc] ... ok. exercise 145 [ j/--noali] ... ok. exercise 146 [ j/--notextw] ... ok. exercise 147 [ j/--textw] ... ok. exercise 148 [ j/--popen] ... ok. exercise 149 [ j/--pextend] ... ok. exercise 150 [ j/--mxfile] ... ok. exercise 151 [ j/-E] ... ok. exercise 152 [ j/-T] ... ok. exercise 153 [ j/--domE] ... ok. exercise 154 [ j/--domT] ... ok. exercise 155 [ j/--incE] ... ok. exercise 156 [ j/--incT] ... ok. exercise 157 [ j/--incdomE] ... ok. exercise 158 [ j/--incdomT] ... ok. exercise 159 [ j/--max] ... ok. exercise 160 [ j/--F1] ... ok. exercise 161 [ j/--F2] ... ok. exercise 162 [ j/--F3] ... ok. exercise 163 [ j/--nobias] ... ok. exercise 164 [ j/--EmL] ... ok. exercise 165 [ j/--EmN] ... ok. exercise 166 [ j/--EvL] ... ok. exercise 167 [ j/--EvN] ... ok. exercise 168 [ j/--EfL] ... ok. exercise 169 [ j/--EfN] ... ok. exercise 170 [ j/--Eft] ... ok. exercise 171 [ j/--nonull2] ... ok. exercise 172 [ j/-Z] ... ok. exercise 173 [ j/--domZ] ... ok. exercise 174 [ j/--seed] ... ok. exercise 175 [ j/--qformat] ... ok. exercise 176 [ j/--tformat] ... ok. exercise 177 [ phmmer] ... ok. exercise 178 [ phmmer/-h] ... ok. exercise 179 [ phmmer/-o] ... ok. exercise 180 [ phmmer/-A] ... ok. exercise 181 [ phmmer/--tblout] ... ok. exercise 182 [ phmmer/--domtblout] ... ok. exercise 183 [ phmmer/--pfamtblout] ... ok. exercise 184 [ phmmer/--acc] ... ok. exercise 185 [ phmmer/--noali] ... ok. exercise 186 [ phmmer/--notextw] ... ok. exercise 187 [ phmmer/--textw] ... ok. exercise 188 [ phmmer/--popen] ... ok. exercise 189 [ phmmer/--pextend] ... ok. exercise 190 [ phmmer/--mxfile] ... ok. exercise 191 [ phmmer/-E] ... ok. exercise 192 [ phmmer/-T] ... ok. exercise 193 [ phmmer/--domE] ... ok. exercise 194 [ phmmer/--domT] ... ok. exercise 195 [ phmmer/--incE] ... ok. exercise 196 [ phmmer/--incT] ... ok. exercise 197 [ phmmer/--incdomE] ... ok. exercise 198 [ phmmer/--incdomT] ... ok. exercise 199 [ phmmer/--max] ... ok. exercise 200 [ phmmer/--F1] ... ok. exercise 201 [ phmmer/--F2] ... ok. exercise 202 [ phmmer/--F3] ... ok. exercise 203 [ phmmer/--nobias] ... ok. exercise 204 [ phmmer/--EmL] ... ok. exercise 205 [ phmmer/--EmN] ... ok. exercise 206 [ phmmer/--EvL] ... ok. exercise 207 [ phmmer/--EvN] ... ok. exercise 208 [ phmmer/--EfL] ... ok. exercise 209 [ phmmer/--EfN] ... ok. exercise 210 [ phmmer/--Eft] ... ok. exercise 211 [ phmmer/--nonull2] ... ok. exercise 212 [ phmmer/-Z] ... ok. exercise 213 [ phmmer/--domZ] ... ok. exercise 214 [ phmmer/--seed] ... ok. exercise 215 [ phmmer/--qformat] ... ok. exercise 216 [ phmmer/--tformat] ... ok. exercise 217 [ nhmmer] ... ok. exercise 218 [ nhmmer/-h] ... ok. exercise 219 [ nhmmer/-o] ... ok. exercise 220 [ nhmmer/-A] ... ok. exercise 221 [ nhmmer/--tblout] ... ok. exercise 222 [ nhmmer/--dfamtblout] ... ok. exercise 223 [ nhmmer/--acc] ... ok. exercise 224 [ nhmmer/--noali] ... ok. exercise 225 [ nhmmer/--notextw] ... ok. exercise 226 [ nhmmer/--textw] ... ok. exercise 227 [ nhmmer/-E] ... ok. exercise 228 [ nhmmer/-T] ... ok. exercise 229 [ nhmmer/--incE] ... ok. exercise 230 [ nhmmer/--incT] ... ok. exercise 231 [ nhmmer/--max] ... ok. exercise 232 [ nhmmer/--F1] ... ok. exercise 233 [ nhmmer/--F2] ... ok. exercise 234 [ nhmmer/--F3] ... ok. exercise 235 [ nhmmer/--nobias] ... ok. exercise 236 [ nhmmer/--nonull2] ... ok. exercise 237 [ nhmmer/-Z] ... ok. exercise 238 [ nhmmer/--seed] ... ok. exercise 239 [ nhmmscan] ... ok. exercise 240 [ nhmmscan/-h] ... ok. exercise 241 [ nhmmscan/-o] ... ok. exercise 242 [ nhmmscan/--tblout] ... ok. exercise 243 [nhmmscan/--dfamtblout] ... ok. exercise 244 [ nhmmscan/--acc] ... ok. exercise 245 [ nhmmscan/--noali] ... ok. exercise 246 [ nhmmscan/--notextw] ... ok. exercise 247 [ nhmmscan/--textw] ... ok. exercise 248 [ nhmmscan/-E] ... ok. exercise 249 [ nhmmscan/-T] ... ok. exercise 250 [ nhmmscan/--incE] ... ok. exercise 251 [ nhmmscan/--incT] ... ok. exercise 252 [ nhmmscan/--max] ... ok. exercise 253 [ nhmmscan/--F1] ... ok. exercise 254 [ nhmmscan/--F2] ... ok. exercise 255 [ nhmmscan/--F3] ... ok. exercise 256 [ nhmmscan/--nobias] ... ok. exercise 257 [ nhmmscan/--nonull2] ... ok. exercise 258 [ nhmmscan/-Z] ... ok. exercise 259 [ nhmmscan/--seed] ... ok. exercise 260 [ hmmemit] ... ok. exercise 261 [ hmmemit/-h] ... ok. exercise 262 [ hmmemit/-c] ... ok. exercise 263 [ hmmemit/-o] ... ok. exercise 264 [ hmmemit/-p] ... ok. exercise 265 [ hmmemit/-N] ... ok. exercise 266 [ hmmemit/-L] ... ok. exercise 267 [ hmmemit/--local] ... ok. exercise 268 [ hmmemit/--unilocal] ... ok. exercise 269 [ hmmemit/--glocal] ... ok. exercise 270 [ hmmemit/--uniglocal] ... ok. exercise 271 [ hmmfetch] ... ok. exercise 272 [ hmmstat] ... ok. exercise 273 [ hmmlogo] ... ok. exercise 274 [ hmmconvert] ... ok. exercise 275 [ hmmsim] ... ok. exercise 276 [ hmmbuild_variation] ... ok. exercise 277 [ hmmscan_variation] ... ok. exercise 278 [ hmmsearch_variation] ... ok. exercise 279 [ phmmer_variation] ... ok. exercise 280 [ mapali] ... ok. exercise 281 [ fragments] ... ok. exercise 282 [ nonresidues] ... ok. exercise 283 [ opt-annotation] ... ok. exercise 284 [ dup-names] ... ok. exercise 285 [ mapali-again] ... ok. exercise 286 [ delete-corruption] ... ok. exercise 287 [ msa-integrity] ... ok. exercise 288 [ hmmemit-consensus] ... ok. exercise 289 [ hmmconvert] ... ok. exercise 290 [ stdin_pipes] ... ok. exercise 291 [ nhmmer_generic] ... ok. exercise 292 [ hmmpgmd_ga] ... ok. exercise 293 [ rewind] ... ok. exercise 294 [ brute-itest] ... ok. exercise 295 [ hmmpress-itest] ... ok. exercise 296 [ h39] ... ok. exercise 297 [ h45] ... ok. exercise 298 [ h50] ... ok. exercise 299 [ h82] ... ok. All 299 exercises at level <= 2 passed. System information: Thu Sep 15 16:26:07 +14 2022 Linux i-capture-the-hostname 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/testsuite' make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg' make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j16 install DESTDIR=/build/hmmer-3.2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' /usr/bin/install -c -d /build/hmmer-3.2.1+dfsg/debian/tmp/usr/bin /usr/bin/install -c -d /build/hmmer-3.2.1+dfsg/debian/tmp/usr/share/man/man1 make -C src install make[2]: Entering directory '/build/hmmer-3.2.1+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/hmmer-3.2.1+dfsg/debian/tmp/usr/bin/ ;\ done make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg/src' make -C documentation install make[2]: Entering directory '/build/hmmer-3.2.1+dfsg/documentation' make -C man install make[3]: Entering directory '/build/hmmer-3.2.1+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/hmmer-3.2.1+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[3]: Leaving directory '/build/hmmer-3.2.1+dfsg/documentation/man' make[2]: Leaving directory '/build/hmmer-3.2.1+dfsg/documentation' make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' dh_installexamples mkdir -p /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/hmmer-3.2.1+dfsg^.^g" find /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/hmmer-3.2.1+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/hmmer-3.2.1+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/hmmer-3.2.1+dfsg' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'hmmer' in '../hmmer_3.2.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.2.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'hmmer-doc' in '../hmmer-doc_3.2.1+dfsg-1_all.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.2.1+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hmmer_3.2.1+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/11596/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/11596/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11596 and its subdirectories I: Current time: Thu Sep 15 16:27:26 +14 2022 I: pbuilder-time-stamp: 1663208846