I: pbuilder: network access will be disabled during build
I: Current time: Thu Apr 18 23:04:41 +14 2024
I: pbuilder-time-stamp: 1713431081
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [vcfanno_0.3.5+ds-2.dsc]
I: copying [./vcfanno_0.3.5+ds.orig.tar.xz]
I: copying [./vcfanno_0.3.5+ds-2.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Dec 19 15:49:25 2023 
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./vcfanno_0.3.5+ds-2.dsc: no acceptable signature found
dpkg-source: info: extracting vcfanno in vcfanno-0.3.5+ds
dpkg-source: info: unpacking vcfanno_0.3.5+ds.orig.tar.xz
dpkg-source: info: unpacking vcfanno_0.3.5+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-archive-xopen.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/D01_modify_environment starting
debug: Running on virt64z.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Apr 18 09:04 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
  BASH_VERSION='5.2.21(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=armhf
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
  DIRSTACK=()
  DISTRIBUTION=trixie
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=arm
  HOST_ARCH=armhf
  IFS=' 	
  '
  INVOCATION_ID=539354fe0f584085aa7ed844bf7b2506
  LANG=C
  LANGUAGE=it_CH:it
  LC_ALL=C
  MACHTYPE=arm-unknown-linux-gnueabihf
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnueabihf
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=4355
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dOpuA8Ji/pbuilderrc_OCLU --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dOpuA8Ji/b2 --logfile b2/build.log vcfanno_0.3.5+ds-2.dsc'
  SUDO_GID=110
  SUDO_UID=103
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://10.0.0.15:3142/
I: uname -a
  Linux i-capture-the-hostname 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Apr 17 11:24 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-hts-dev, golang-gopkg-check.v1-dev, golang-github-burntsushi-toml-dev, golang-github-brentp-irelate-dev, golang-github-brentp-vcfgo-dev, golang-github-brentp-bix-dev, golang-github-shenwei356-xopen-dev, golang-github-pkg-errors-dev, golang-github-brentp-goluaez-dev, samtools, tabix
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19635 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-golang; however:
  Package dh-golang is not installed.
 pbuilder-satisfydepends-dummy depends on golang-any; however:
  Package golang-any is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however:
  Package golang-github-biogo-hts-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-gopkg-check.v1-dev; however:
  Package golang-gopkg-check.v1-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-burntsushi-toml-dev; however:
  Package golang-github-burntsushi-toml-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-irelate-dev; however:
  Package golang-github-brentp-irelate-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-vcfgo-dev; however:
  Package golang-github-brentp-vcfgo-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-bix-dev; however:
  Package golang-github-brentp-bix-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-xopen-dev; however:
  Package golang-github-shenwei356-xopen-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-pkg-errors-dev; however:
  Package golang-github-pkg-errors-dev is not installed.
 pbuilder-satisfydepends-dummy depends on golang-github-brentp-goluaez-dev; however:
  Package golang-github-brentp-goluaez-dev is not installed.
 pbuilder-satisfydepends-dummy depends on samtools; however:
  Package samtools is not installed.
 pbuilder-satisfydepends-dummy depends on tabix; however:
  Package tabix is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.22-go{a} golang-1.22-src{a} golang-any{a} golang-github-biogo-hts-dev{a} golang-github-brentp-bix-dev{a} golang-github-brentp-goluaez-dev{a} golang-github-brentp-irelate-dev{a} golang-github-brentp-vcfgo-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-creack-pty-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-pkg-errors-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-gluare-dev{a} golang-github-yuin-goldmark-dev{a} golang-github-yuin-gopher-lua-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 
0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded.
Need to get 109 MB of archives. After unpacking 438 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB]
Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB]
Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB]
Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB]
Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB]
Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB]
Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB]
Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB]
Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB]
Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB]
Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB]
Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB]
Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB]
Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB]
Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB]
Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB]
Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB]
Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB]
Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB]
Get: 31 http://deb.debian.org/debian trixie/main armhf dh-golang all 1.62 [24.7 kB]
Get: 32 http://deb.debian.org/debian trixie/main armhf golang-1.22-src all 1.22.2-2 [18.8 MB]
Get: 33 http://deb.debian.org/debian trixie/main armhf golang-1.22-go armhf 1.22.2-2 [21.5 MB]
Get: 34 http://deb.debian.org/debian trixie/main armhf golang-src all 2:1.22~3 [5020 B]
Get: 35 http://deb.debian.org/debian trixie/main armhf golang-go armhf 2:1.22~3 [44.2 kB]
Get: 36 http://deb.debian.org/debian trixie/main armhf golang-any armhf 2:1.22~3 [5104 B]
Get: 37 http://deb.debian.org/debian trixie/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get: 38 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB]
Get: 39 http://deb.debian.org/debian trixie/main armhf golang-github-pkg-errors-dev all 0.9.1-3 [12.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main armhf golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB]
Get: 41 http://deb.debian.org/debian trixie/main armhf golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get: 42 http://deb.debian.org/debian trixie/main armhf golang-golang-x-mod-dev all 0.16.0-1 [103 kB]
Get: 43 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sys-dev all 0.18.0-1 [402 kB]
Get: 44 http://deb.debian.org/debian trixie/main armhf golang-github-yuin-goldmark-dev all 1.7.0-1 [113 kB]
Get: 45 http://deb.debian.org/debian trixie/main armhf golang-golang-x-term-dev all 0.18.0-1 [14.7 kB]
Get: 46 http://deb.debian.org/debian trixie/main armhf golang-golang-x-text-dev all 0.14.0-2 [4001 kB]
Get: 47 http://deb.debian.org/debian trixie/main armhf golang-golang-x-crypto-dev all 1:0.21.0-1 [1671 kB]
Get: 48 http://deb.debian.org/debian trixie/main armhf golang-golang-x-net-dev all 1:0.23.0+dfsg-1 [896 kB]
Get: 49 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sync-dev all 0.6.0-1 [18.5 kB]
Get: 50 http://deb.debian.org/debian trixie/main armhf golang-golang-x-tools-dev all 1:0.19.0+ds-1 [1566 kB]
Get: 51 http://deb.debian.org/debian trixie/main armhf golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB]
Get: 52 http://deb.debian.org/debian trixie/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB]
Get: 53 http://deb.debian.org/debian trixie/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get: 54 http://deb.debian.org/debian trixie/main armhf golang-github-brentp-bix-dev all 0.0~git20190718.00aa7a7+ds-2 [7608 B]
Get: 55 http://deb.debian.org/debian trixie/main armhf golang-github-yuin-gopher-lua-dev all 0.0~git20170915.0.eb1c729-5 [115 kB]
Get: 56 http://deb.debian.org/debian trixie/main armhf golang-github-yuin-gluare-dev all 0.0~git20170607.d7c94f1-2 [5204 B]
Get: 57 http://deb.debian.org/debian trixie/main armhf golang-github-brentp-goluaez-dev all 0.0~git20160116.dd35d08-2 [5068 B]
Get: 58 http://deb.debian.org/debian trixie/main armhf golang-github-brentp-irelate-dev all 0.0.1+ds-1 [4136 kB]
Get: 59 http://deb.debian.org/debian trixie/main armhf golang-github-brentp-vcfgo-dev all 0.0~git20190824.654ed2e-2 [40.7 kB]
Get: 60 http://deb.debian.org/debian trixie/main armhf golang-github-burntsushi-toml-dev all 1.3.2-2 [111 kB]
Get: 61 http://deb.debian.org/debian trixie/main armhf golang-github-cespare-xxhash-dev all 2.1.1-2 [8888 B]
Get: 62 http://deb.debian.org/debian trixie/main armhf golang-github-klauspost-compress-dev all 1.17.7+ds1-1 [33.0 MB]
Get: 63 http://deb.debian.org/debian trixie/main armhf golang-github-klauspost-pgzip-dev all 1.2.6-1 [115 kB]
Get: 64 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-xopen-dev all 0.0~git20181203.f4f16dd-2 [6036 B]
Get: 65 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB]
Get: 66 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB]
Get: 67 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB]
Get: 68 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB]
Get: 69 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB]
Get: 70 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get: 71 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB]
Get: 72 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB]
Get: 73 http://deb.debian.org/debian trixie/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB]
Get: 74 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB]
Get: 75 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB]
Get: 76 http://deb.debian.org/debian trixie/main armhf libhts3 armhf 1.19+ds-1 [394 kB]
Get: 77 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.4+20240113-1 [81.8 kB]
Get: 78 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.19.2-1 [614 kB]
Get: 79 http://deb.debian.org/debian trixie/main armhf tabix armhf 1.19+ds-1 [409 kB]
Fetched 109 MB in 2s (66.6 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
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(Reading database ... 19635 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ...
Unpacking sensible-utils (0.0.22) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ...
Unpacking libmagic-mgc (1:5.45-2+b1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.45-2+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ...
Unpacking file (1:5.45-2+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ...
Unpacking gettext-base (0.21-14+b1) ...
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Reading package lists...
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 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for trixie
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../vcfanno_0.3.5+ds-2_source.changes
dpkg-buildpackage: info: source package vcfanno
dpkg-buildpackage: info: source version 0.3.5+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Lance Lin <lq27267@gmail.com>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem=golang --with=golang
   debian/rules execute_before_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
find . -type f -name *.tbi | xargs rm -rf
find . -type f -name ex.bam* | xargs rm -rf
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_auto_clean -O--buildsystem=golang
   dh_autoreconf_clean -O--buildsystem=golang
   dh_clean -O--buildsystem=golang
 debian/rules binary
dh binary --buildsystem=golang --with=golang
   dh_update_autotools_config -O--buildsystem=golang
   dh_autoreconf -O--buildsystem=golang
   dh_auto_configure -O--buildsystem=golang
   dh_auto_build -O--buildsystem=golang
	cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared
internal/unsafeheader
internal/goarch
encoding
internal/cpu
internal/coverage/rtcov
internal/godebugs
internal/abi
internal/chacha8rand
internal/goexperiment
internal/goos
internal/bytealg
runtime/internal/atomic
runtime/internal/math
runtime/internal/sys
runtime/internal/syscall
internal/itoa
math/bits
unicode/utf8
internal/race
math
sync/atomic
unicode
cmp
slices
unicode/utf16
runtime
log/internal
container/list
crypto/internal/alias
crypto/internal/boring/sig
vendor/golang.org/x/crypto/cryptobyte/asn1
internal/nettrace
vendor/golang.org/x/crypto/internal/alias
internal/reflectlite
crypto/subtle
sync
internal/testlog
internal/bisect
internal/singleflight
runtime/cgo
errors
sort
internal/godebug
strconv
internal/oserror
io
syscall
internal/safefilepath
path
reflect
strings
bytes
bufio
internal/syscall/unix
time
internal/syscall/execenv
hash
hash/crc32
container/heap
github.com/brentp/irelate/interfaces
regexp/syntax
math/rand
internal/poll
io/fs
internal/fmtsort
encoding/binary
github.com/BurntSushi/toml/internal
regexp
context
os
crypto
crypto/internal/randutil
crypto/internal/nistec/fiat
encoding/base64
crypto/cipher
crypto/internal/edwards25519/field
crypto/internal/edwards25519
crypto/internal/boring
crypto/aes
crypto/des
fmt
io/ioutil
path/filepath
crypto/sha512
crypto/hmac
os/exec
crypto/md5
crypto/rc4
crypto/sha1
flag
encoding/json
compress/flate
encoding/hex
net/url
compress/gzip
github.com/biogo/hts/bgzf
encoding/csv
log
github.com/pkg/errors
github.com/biogo/hts/bgzf/index
github.com/BurntSushi/toml
github.com/biogo/hts/csi
github.com/biogo/hts/internal
github.com/brentp/vcfgo
github.com/yuin/gopher-lua/ast
github.com/biogo/hts/tabix
github.com/biogo/hts/sam
github.com/yuin/gopher-lua/parse
github.com/yuin/gopher-lua/pm
github.com/klauspost/compress/flate
github.com/yuin/gopher-lua
math/big
github.com/biogo/hts/bam
github.com/brentp/irelate/parsers
github.com/brentp/bix
github.com/klauspost/pgzip
crypto/internal/nistec
github.com/brentp/irelate
crypto/rand
crypto/internal/bigmod
crypto/internal/boring/bbig
encoding/asn1
crypto/ed25519
crypto/ecdh
crypto/elliptic
crypto/rsa
crypto/sha256
vendor/golang.org/x/crypto/cryptobyte
crypto/dsa
crypto/x509/pkix
encoding/pem
vendor/golang.org/x/net/dns/dnsmessage
internal/intern
net/netip
crypto/ecdsa
vendor/golang.org/x/crypto/chacha20
vendor/golang.org/x/crypto/internal/poly1305
vendor/golang.org/x/crypto/hkdf
vendor/golang.org/x/crypto/chacha20poly1305
net
vendor/golang.org/x/text/transform
github.com/yuin/gluare
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/unicode/norm
github.com/brentp/goluaez
vendor/golang.org/x/text/secure/bidirule
vendor/golang.org/x/net/http2/hpack
github.com/brentp/vcfanno/api
mime
mime/quotedprintable
net/http/internal
net/http/internal/ascii
vendor/golang.org/x/net/idna
os/user
vendor/golang.org/x/net/http/httpproxy
net/textproto
crypto/x509
vendor/golang.org/x/net/http/httpguts
mime/multipart
crypto/tls
net/http/httptrace
net/http
github.com/shenwei356/xopen
github.com/brentp/vcfanno/shared
github.com/brentp/vcfanno
   dh_auto_test -O--buildsystem=golang
	cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared
?   	github.com/brentp/vcfanno/shared	[no test files]
testing: warning: no tests to run
PASS
ok  	github.com/brentp/vcfanno	0.021s [no tests to run]
=== RUN   Test
OK: 13 passed
--- PASS: Test (0.05s)
=== RUN   TestHandleA
--- PASS: TestHandleA (0.00s)
=== RUN   TestHandlAMulti
--- PASS: TestHandlAMulti (0.00s)
=== RUN   TestByAlt
--- PASS: TestByAlt (0.00s)
PASS
ok  	github.com/brentp/vcfanno/api	0.073s
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=golang
   dh_prep -O--buildsystem=golang
   debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
dh_auto_install -- --no-source
	cd obj-arm-linux-gnueabihf && mkdir -p /build/reproducible-path/vcfanno-0.3.5\+ds/debian/tmp/usr
	cd obj-arm-linux-gnueabihf && cp -r bin /build/reproducible-path/vcfanno-0.3.5\+ds/debian/tmp/usr
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_install -O--buildsystem=golang
   debian/rules override_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/vcfanno-0.3.5+ds'
# Regenerate bam and bam index file
cat debian/missing-sources/ex.sam| samtools view -Sb - > example/ex.bam
samtools index example/ex.bam example/ex.bam.bai
# Remove corrupt gz file
rm -rf tests/notbgz/notbgz.vcf.gz
# Regenerate all .tbi files
tabix example/exac.vcf.gz
tabix example/fitcons.bed.gz
tabix tests/astar/astar.anno.vcf.gz
tabix tests/by_alt_float/annotation.tsv.gz
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "2	41647	A	G	0.591814	8.493"
tabix tests/citest/at/testexon.bed.gz
tabix tests/citest/dummyexons.bed.gz
tabix tests/data/multiple-alts.vcf.gz
tabix tests/data/number.vcf.gz
tabix tests/dbnsfp/dbNSFP_example.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	A	A	V	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.01	0.56404	D	Q96SF2	TCPQM_HUMAN	380	0.789	0.42612	P	0.542	0.47084	P	0.904520	0.08589	U	0.938783	0.885143	0.27956	N	simple_aae	A380V	TCPQL_HUMAN	A380V	2.93	0.84781	M	2.34	0.16357	T	-3.1	0.63513	D	NM_014406.4	A380V	0.141	0.16484	-1.0168	0.24741	T	0.0721	0.29265	T	10	5.216332	0.70443	25.6	0.99874441920417656	0.95120	0.57787	0.30213	DAEFGBI	0.140898394235071	3.051114	0.48442	0.0299346018802206	0.41293	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	C	A	G	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.033	0.44307	D	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	U	0.938783	0.903476	0.27629	N	simple_aae	A380G	TCPQL_HUMAN	A380G	2.93	0.84781	M	2.51	0.14293	T	-2.32	0.51437	N	NM_014406.4	A380G	0.103	0.10746	-0.8882	0.49115	T	0.0370	0.15942	T	10	3.370940	0.46354	22.9	0.99354601284678379	0.60415	0.63209	0.31754	DAEFGBI	-0.422298261850935	1.3349	0.24762	-0.399121413419092	0.24558	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072302	G	T	A	D	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.004	0.65363	D	Q96SF2	TCPQM_HUMAN	380	0.992	0.62897	D	0.889	0.61317	P	0.904520	0.08589	U	0.938783	0.641363	0.30591	N	simple_aae	A380D	TCPQL_HUMAN	A380D	2.93	0.84781	M	2.38	0.15849	T	-3.02	0.62590	D	NM_014406.4	A380D	0.399	0.45798	-0.9564	0.39865	T	0.0994	0.37051	T	10	5.077183	0.68398	25.3	0.99680235566444375	0.79002	0.61538	0.31252	DAEFGBI	0.302961726972868	3.794568	0.56349	0.143990621275748	0.47151	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	A	A	S	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	1.0	0.00963	T	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	N	0.938783	0.988396	0.24389	N	simple_aae	A380S	TCPQL_HUMAN	A380S	0.93	0.23636	L	2.52	0.14169	T	-0.05	0.07751	N	NM_014406.4	A380S	0.072	0.06067	-0.9413	0.42435	T	0.0190	0.07938	T	10	0.328585	0.12563	5.967	0.75658077739943641	0.10790	0.01742	0.05435	NAEFGBI	-0.952241553466705	0.4572448	0.09664	-0.959672568167129	0.10513	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	G	A	P	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.168	0.22973	T	Q96SF2	TCPQM_HUMAN	380	0.231	0.28914	B	0.179	0.34149	B	0.904520	0.08589	N	0.938783	0.910584	0.27489	N	simple_aae	A380P	TCPQL_HUMAN	A380P	1.83	0.48223	L	2.43	0.15268	T	-2.6	0.55938	D	NM_014406.4	A380P	0.246	0.30065	-0.9532	0.40439	T	0.0355	0.15290	T	10	1.588787	0.25254	13.79	0.97019856529327109	0.31467	0.02096	0.06147	NAEFGBI	-0.653690275480882	0.8922109	0.17411	-0.724371843784986	0.16073	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072303	17072303	C	T	A	T	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.011	0.55478	D	Q96SF2	TCPQM_HUMAN	380	0.62	0.38009	P	0.42	0.43281	B	0.904520	0.08589	U	0.938783	0.974599	0.25456	N	simple_aae	A380T	TCPQL_HUMAN	A380T	2.93	0.84781	M	2.38	0.15849	T	-1.63	0.39092	N	NM_014406.4	A380T	0.116	0.12740	-0.9890	0.32851	T	0.0565	0.23792	T	10	4.977856	0.66957	25.1	0.99619336564501015	0.75088	0.02107	0.06169	NAEFGBI	-0.366914589131182	1.4564	0.26729	-0.531429606692027	0.20917	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	A	G	V	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.997	0.85043	D	0.001429	0.39031	U	0.000000	0.999999	0.58814	D	simple_aae	G379V	TCPQL_HUMAN	G379V	3.235	0.89818	M	0.17	0.60507	T	-8.34	0.97032	D	NM_014406.4	G379V	0.823	0.81093	-0.3590	0.73312	T	0.3588	0.72112	T	10	5.317930	0.71958	25.8	0.99597950363474697	0.73827	0.12361	0.17034	NAEFGBI	0.180546234526767	3.218253	0.50322	-0.032189250061603	0.38380	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	G	G	A	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.027	0.46462	D	Q96SF2	TCPQM_HUMAN	379	0.967	0.54448	D	0.893	0.61563	P	0.001429	0.39031	U	0.000000	0.96704	0.38563	D	simple_aae	G379A	TCPQL_HUMAN	G379A	2.085	0.57921	M	0.23	0.59737	T	-5.51	0.85890	D	NM_014406.4	G379A	0.638	0.65489	-0.5215	0.67883	T	0.2845	0.65659	T	10	1.587093	0.25234	13.78	0.95704074870341493	0.27016	0.10995	0.16155	N	AEFGBI	0.0767559827490708	2.795521	0.45442	-0.102097947215648	0.35323	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072305	C	T	G	E	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.998	0.87503	D	0.001429	0.39031	U	0.000000	0.987014	0.40521	D	simple_aae	G379E	TCPQL_HUMAN	G379E	3.235	0.89818	M	0.19	0.60258	T	-7.3	0.94470	D	NM_014406.4	G379E	0.87	0.85752	-0.3469	0.73662	T	0.3588	0.72112	T	10	4.934483	0.66331	25.0	0.99672190146911999	0.78475	0.09552	0.15110	NAEFGBI	0.180844068315063	3.219533	0.50337	-0.0319789254027045	0.38387	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	A	G	X	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	.	.	.	.	.	.	.	.	.	.	.	.	0.001429	0.39031	U	0.000000	1	0.81033	D	complex_aae	G379*	TCPQL_HUMAN	G379*	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	10.820180	0.97019	36	0.99023181097119439	0.50228	0.42257	0.26601	N	AEFGBI	0.602300241062557	5.946894	0.73340	0.306416110176004	0.56174	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	G	G	R	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.462289	0.74129	26.1	0.99854462032636349	0.93313	0.43619	0.26900	NAEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072306	17072306	C	T	G	R	rs764133439	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.691531	0.77646	26.8	0.9985436076811024	0.93313	0.36787	0.25383	N	AEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	2	1.647e-05	2	1.647e-05	0	0	2	1.727e-04	0	0	0	0	0	0	0	0	21.883e-05	2	1.883e-05	0	0	2	1.783e-04	0	0	0	0	0	0	0	0	2	2.204e-05	2	2.204e-05	0	0	2	1.729e-04	0	0	0	0	0	0	0	0	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
tabix tests/dbnsfp/dbNSFP_ex.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	A	A	V	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.01	0.56404	D	Q96SF2	TCPQM_HUMAN	380	0.789	0.42612	P	0.542	0.47084	P	0.904520	0.08589	U	0.938783	0.885143	0.27956	N	simple_aae	A380V	TCPQL_HUMAN	A380V	2.93	0.84781	M	2.34	0.16357	T	-3.1	0.63513	D	NM_014406.4	A380V	0.141	0.16484	-1.0168	0.24741	T	0.0721	0.29265	T	10	5.216332	0.70443	25.6	0.99874441920417656	0.95120	0.57787	0.30213	DAEFGBI	0.140898394235071	3.051114	0.48442	0.0299346018802206	0.41293	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	C	A	G	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.033	0.44307	D	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	U	0.938783	0.903476	0.27629	N	simple_aae	A380G	TCPQL_HUMAN	A380G	2.93	0.84781	M	2.51	0.14293	T	-2.32	0.51437	N	NM_014406.4	A380G	0.103	0.10746	-0.8882	0.49115	T	0.0370	0.15942	T	10	3.370940	0.46354	22.9	0.99354601284678379	0.60415	0.63209	0.31754	DAEFGBI	-0.422298261850935	1.3349	0.24762	-0.399121413419092	0.24558	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072301	17072302	G	T	A	D	.	22	16591412	22	15452302	CCT8L2	-	GCC	2	0	g	G/G	G/G	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.004	0.65363	D	Q96SF2	TCPQM_HUMAN	380	0.992	0.62897	D	0.889	0.61317	P	0.904520	0.08589	U	0.938783	0.641363	0.30591	N	simple_aae	A380D	TCPQL_HUMAN	A380D	2.93	0.84781	M	2.38	0.15849	T	-3.02	0.62590	D	NM_014406.4	A380D	0.399	0.45798	-0.9564	0.39865	T	0.0994	0.37051	T	10	5.077183	0.68398	25.3	0.99680235566444375	0.79002	0.61538	0.31252	DAEFGBI	0.302961726972868	3.794568	0.56349	0.143990621275748	0.47151	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	4.018000	0.56642	0.572000	0.28477	0.997000	0.39909	0.411000	0.25598	0.0:0.0:1.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	A	A	S	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	1.0	0.00963	T	Q96SF2	TCPQM_HUMAN	380	0.09	0.23627	B	0.07	0.26378	B	0.904520	0.08589	N	0.938783	0.988396	0.24389	N	simple_aae	A380S	TCPQL_HUMAN	A380S	0.93	0.23636	L	2.52	0.14169	T	-0.05	0.07751	N	NM_014406.4	A380S	0.072	0.06067	-0.9413	0.42435	T	0.0190	0.07938	T	10	0.328585	0.12563	5.967	0.75658077739943641	0.10790	0.01742	0.05435	NAEFGBI	-0.952241553466705	0.4572448	0.09664	-0.959672568167129	0.10513	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	G	A	P	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.168	0.22973	T	Q96SF2	TCPQM_HUMAN	380	0.231	0.28914	B	0.179	0.34149	B	0.904520	0.08589	N	0.938783	0.910584	0.27489	N	simple_aae	A380P	TCPQL_HUMAN	A380P	1.83	0.48223	L	2.43	0.15268	T	-2.6	0.55938	D	NM_014406.4	A380P	0.246	0.30065	-0.9532	0.40439	T	0.0355	0.15290	T	10	1.588787	0.25254	13.79	0.97019856529327109	0.31467	0.02096	0.06147	NAEFGBI	-0.653690275480882	0.8922109	0.17411	-0.724371843784986	0.16073	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072302	17072303	C	T	A	T	.	22	16591413	22	15452303	CCT8L2	-	GCC	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	380	0.011	0.55478	D	Q96SF2	TCPQM_HUMAN	380	0.62	0.38009	P	0.42	0.43281	B	0.904520	0.08589	U	0.938783	0.974599	0.25456	N	simple_aae	A380T	TCPQL_HUMAN	A380T	2.93	0.84781	M	2.38	0.15849	T	-1.63	0.39092	N	NM_014406.4	A380T	0.116	0.12740	-0.9890	0.32851	T	0.0565	0.23792	T	10	4.977856	0.66957	25.1	0.99619336564501015	0.75088	0.02107	0.06169	NAEFGBI	-0.366914589131182	1.4564	0.26729	-0.531429606692027	0.20917	0.00151714177988376	0.08643	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	-0.865	0.10073	0.035000	0.13577	0.514000	0.28085	0.097000	0.22520	0.417000	0.25698	0.2835:0.437:0.2795:0.0	3.6701	0.07747	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	A	G	V	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.997	0.85043	D	0.001429	0.39031	U	0.000000	0.999999	0.58814	D	simple_aae	G379V	TCPQL_HUMAN	G379V	3.235	0.89818	M	0.17	0.60507	T	-8.34	0.97032	D	NM_014406.4	G379V	0.823	0.81093	-0.3590	0.73312	T	0.3588	0.72112	T	10	5.317930	0.71958	25.8	0.99597950363474697	0.73827	0.12361	0.17034	NAEFGBI	0.180546234526767	3.218253	0.50322	-0.032189250061603	0.38380	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	G	G	A	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.027	0.46462	D	Q96SF2	TCPQM_HUMAN	379	0.967	0.54448	D	0.893	0.61563	P	0.001429	0.39031	U	0.000000	0.96704	0.38563	D	simple_aae	G379A	TCPQL_HUMAN	G379A	2.085	0.57921	M	0.23	0.59737	T	-5.51	0.85890	D	NM_014406.4	G379A	0.638	0.65489	-0.5215	0.67883	T	0.2845	0.65659	T	10	1.587093	0.25234	13.78	0.95704074870341493	0.27016	0.10995	0.16155	N	AEFGBI	0.0767559827490708	2.795521	0.45442	-0.102097947215648	0.35323	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072304	17072305	C	T	G	E	.	22	16591415	22	15452305	CCT8L2	-	GGA	2	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.001	0.78421	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.998	0.87503	D	0.001429	0.39031	U	0.000000	0.987014	0.40521	D	simple_aae	G379E	TCPQL_HUMAN	G379E	3.235	0.89818	M	0.19	0.60258	T	-7.3	0.94470	D	NM_014406.4	G379E	0.87	0.85752	-0.3469	0.73662	T	0.3588	0.72112	T	10	4.934483	0.66331	25.0	0.99672190146911999	0.78475	0.09552	0.15110	NAEFGBI	0.180844068315063	3.219533	0.50337	-0.0319789254027045	0.38387	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	0.304000	0.18840	0.514000	0.28085	0.101000	0.22602	0.430000	0.25913	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	A	G	X	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	.	.	.	.	.	.	.	.	.	.	.	.	0.001429	0.39031	U	0.000000	1	0.81033	D	complex_aae	G379*	TCPQL_HUMAN	G379*	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	10.820180	0.97019	36	0.99023181097119439	0.50228	0.42257	0.26601	N	AEFGBI	0.602300241062557	5.946894	0.73340	0.306416110176004	0.56174	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	G	G	R	.	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.462289	0.74129	26.1	0.99854462032636349	0.93313	0.43619	0.26900	NAEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	...	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "22	17072305	17072306	C	T	G	R	rs764133439	22	16591416	22	15452306	CCT8L2	-	GGA	1	0	c	C/C	C/C	ENSG00000198445	ENST00000359963	ENSP00000353048	379	0.0	0.91219	D	Q96SF2	TCPQM_HUMAN	379	1.0	0.89865	D	0.999	0.91584	D	0.001429	0.39031	U	0.000000	0.988568	0.40787	D	simple_aae	G379R	TCPQL_HUMAN	G379R	3.235	0.89818	M	0.18	0.60383	T	-7.44	0.94858	D	NM_014406.4	G379R	0.835	0.82245	-0.3469	0.73662	T	0.3588	0.72112	T	10	5.691531	0.77646	26.8	0.9985436076811024	0.93313	0.36787	0.25383	N	AEFGBI	0.317324963236638	3.869725	0.57083	0.12440239999813	0.46107	0.00799435000615469	0.11615	0.487112	0.13308	0	0.573888	0.26071	0	0.547309	0.14640	0	0.564101	0.26208	0	1.98	1.98	0.25231	3.203000	0.50530	0.514000	0.28085	0.341000	0.25456	0.437000	0.26030	0.0:1.0:0.0:0.0	7.4423	0.26198	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	2	1.647e-05	2	1.647e-05	0	0	2	1.727e-04	0	0	0	0	0	0	0	0	21.883e-05	2	1.883e-05	0	0	2	1.783e-04	0	0	0	0	0	0	0	0	2	2.204e-05	2	2.204e-05	0	0	2	1.729e-04	0	0	0	0	0	0	0	0	.	.	.	.	TCP-1-like chaperonin intermediate domain	.	."
tabix tests/id-test/cosmic.small.vcf.gz
tabix tests/id-test/dbsnp.small.vcf.gz
tabix tests/id-test/small.vcf.gz
tabix tests/multiple-alts/ma-db.vcf.gz
tabix tests/notbgz/gno.vcf.gz
tabix tests/overwrite-multiple-alts/a/whole.vcf.gz
tabix tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz
tabix tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz
tabix tests/ref-alt-test/tmp_annotation.txt.gz
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "1	14397	rs756427959	CTGT	C	530	71	0.1340	194	71	0	460	59	0.1283	171	59	0	304	36	0.1184	116	36	0	94	11	0.1170	36	11	0"
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "1	14397	rs756427959	CTGT	CT	530	0	0.0000	265	0	0	460	0	0.0000	230	0	0	304	0	0.0000	152	0	0	94	0	0.0000	47	0	0"
tabix tests/ref-alt-test/tmp_calls.vcf.gz
tabix tests/testVA/test-gnomad.vcf.gz
tabix docs/examples/gff_sv/genes.gff3.gz
dh_installdocs
make[1]: Leaving directory '/build/reproducible-path/vcfanno-0.3.5+ds'
   dh_installchangelogs -O--buildsystem=golang
   dh_installman -O--buildsystem=golang
   dh_installsystemduser -O--buildsystem=golang
   dh_perl -O--buildsystem=golang
   dh_link -O--buildsystem=golang
   dh_strip_nondeterminism -O--buildsystem=golang
   dh_compress -O--buildsystem=golang
   dh_fixperms -O--buildsystem=golang
   dh_missing -O--buildsystem=golang
   dh_strip -a -O--buildsystem=golang
dh_strip: warning: Could not find the BuildID in debian/vcfanno/usr/bin/vcfanno
   dh_makeshlibs -a -O--buildsystem=golang
   dh_shlibdeps -a -O--buildsystem=golang
   dh_installdeb -O--buildsystem=golang
   dh_golang -O--buildsystem=golang
   dh_gencontrol -O--buildsystem=golang
dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined
   dh_md5sums -O--buildsystem=golang
   dh_builddeb -O--buildsystem=golang
dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_armhf.deb'.
dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-2_armhf.buildinfo
 dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/4355/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/4355 and its subdirectories
I: Current time: Thu Apr 18 23:07:20 +14 2024
I: pbuilder-time-stamp: 1713431240