I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 12 14:09:08 +14 2025 I: pbuilder-time-stamp: 1749686948 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [autodocksuite_4.2.6-9.dsc] I: copying [./autodocksuite_4.2.6.orig.tar.gz] I: copying [./autodocksuite_4.2.6-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 20 10:01:11 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./autodocksuite_4.2.6-9.dsc: no acceptable signature found dpkg-source: info: extracting autodocksuite in autodocksuite-4.2.6 dpkg-source: info: unpacking autodocksuite_4.2.6.orig.tar.gz dpkg-source: info: unpacking autodocksuite_4.2.6-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying create_fake_autoreconf_files.patch dpkg-source: info: applying csh2bash.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/333012/tmp/hooks/D01_modify_environment starting debug: Running on ionos15-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 12 00:09 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/333012/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/333012/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=3be3de6c7a06419d92a6a09cebb6da22 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=333012 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yXnFw5xE/pbuilderrc_I9t3 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yXnFw5xE/b2 --logfile b2/build.log autodocksuite_4.2.6-9.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 10 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/333012/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 24.8 MB of archives. After unpacking 98.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40-8 [92.8 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 36 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b3 [692 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Fetched 24.8 MB in 1s (22.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20015 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21007 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40-8_amd64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.191-1+b1_amd64.deb ... Unpacking libelf1t64:amd64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../25-libicu72_72.1-4+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-4+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_amd64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:amd64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 12 00:10:00 UTC 2025. Universal Time is now: Thu Jun 12 00:10:00 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Processing triggers for libc-bin (2.38-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/333012/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/333012/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/autodocksuite-4.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../autodocksuite_4.2.6-9_source.changes dpkg-buildpackage: info: source package autodocksuite dpkg-buildpackage: info: source version 4.2.6-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_auto_clean --sourcedirectory=autodock dh_auto_clean --sourcedirectory=autogrid rm -rf autodock/usr autogrid/usr rm -rf autodock/compile autogrid/compile rm -rf autogrid/mingw_* autogrid/parse_param_line.* autogrid/printdate.* autogrid/printhms.* autogrid/read_parameter_library* autogrid/stop.* autogrid/timesys* if [ -d debian/autodock_save ] ; then mv debian/autodock_save/* autodock; rmdir debian/autodock_save ; fi if [ -d debian/autogrid_save ] ; then mv debian/autogrid_save/* autogrid; rmdir debian/autogrid_save ; fi # remove test results rm -rf autodock/Tests/popfile autodock/Tests/test_1pgp*.dlg rm -rf autodock_testresults rm -rf autogrid/Tests/hsg1_sm.*.map autogrid/Tests/hsg1_sm.glg autogrid/Tests/hsg1_sm.maps* autogrid/Tests/test_x1* autogrid/Tests/x1hpv.*.map autogrid/Tests/x1hpv.maps.* rm -rf autogrid_testresults find . -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' mkdir -p debian/autodock_save cd autodock && cp -a Makefile.in aclocal.m4 config.guess config.sub configure ../debian/autodock_save && autoreconf -i configure.ac:36: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:36: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:36: the top level configure.ac:36: installing './compile' dh_auto_configure --sourcedirectory=autodock cd autodock && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /build/reproducible-path/autodocksuite-4.2.6/autodock/missing: Unknown '--is-lightweight' option Try '/build/reproducible-path/autodocksuite-4.2.6/autodock/missing --help' for more information configure: WARNING: 'missing' script is too old or missing checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... no checking for sqrt... no checking for strncasecmp... yes checking whether the compiler supports GNU C++... (cached) yes checking whether g++ accepts -g... (cached) yes checking for g++ option to enable C++11 features... (cached) none needed checking dependency style of g++... (cached) none checking for g++ option to support OpenMP... -fopenmp checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands mkdir -p debian/autogrid_save cd autogrid && cp -a Makefile.in aclocal.m4 config.guess config.sub configure ../debian/autogrid_save && autoreconf -i configure.ac:27: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:27: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:27: the top level configure.ac:24: installing './compile' dh_auto_configure --sourcedirectory=autogrid cd autogrid && ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes /build/reproducible-path/autodocksuite-4.2.6/autogrid/missing: Unknown '--is-lightweight' option Try '/build/reproducible-path/autodocksuite-4.2.6/autogrid/missing --help' for more information configure: WARNING: 'missing' script is too old or missing checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for sqrt in -lm... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for GNU libc compatible malloc... yes checking for gethostname... yes checking for getpid... yes checking for GetProcessId... no checking for fchmod... yes checking for setlinebuf... yes checking for sysconf... yes checking for times... yes checking for getrusage... yes checking for pow... yes checking for sqrt... yes checking for strncasecmp... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_auto_build --sourcedirectory=autodock cd autodock && make -j42 make[2]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' rm -f default_parameters.h sh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h make all-am make[3]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc com.cc:238: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 238 | #pragma omp critical | g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc main.cc:798:74: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 798 | (void) fprintf(logFile, " Compiled on %s at %s\n\n\n", __DATE__, __TIME__); | ^~~~~~~~ main.cc:798:84: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 798 | (void) fprintf(logFile, " Compiled on %s at %s\n\n\n", __DATE__, __TIME__); | ^~~~~~~~ main.cc:3490: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 3490 | #pragma omp parallel for \ | getrms.cc: In function 'Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)': getrms.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^ getrms.cc:48:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int i, j, xyz; | ^~~ read_parameter_library.cc: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)': read_parameter_library.cc:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ get_atom_type.cc: In function 'int get_atom_type(const char*)': get_atom_type.cc:53:9: warning: variable 'bond_index' set but not used [-Wunused-but-set-variable] 53 | int bond_index = -1; | ^~~~~~~~~~ In file included from eval.h:38, from eval.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from eval.h:38, from support.h:237, from conformation_sampler.h:29, from conformation_sampler.cc:27: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ readmap.cc: In function 'Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)': readmap.cc:82:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 82 | register int xyz = 0; | ^~~ readmap.cc:83:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 83 | register int i = 0; | ^ readmap.cc:84:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 84 | register int j = 0; | ^ readmap.cc:85:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 85 | register int k = 0; | ^ eval.cc: In function 'void make_state_from_rep(const Representation* const*, State*, int, FILE*)': eval.cc:72:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register int i; | ^ eval.cc: In member function 'double Eval::eval(int)': eval.cc:135:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 135 | register int i; | ^ conformation_sampler.cc: In constructor 'ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)': conformation_sampler.cc:99:10: warning: variable 'base_q' set but not used [-Wunused-but-set-variable] 99 | Quat base_q = probe_point.readQuat(); | ^~~~~~ In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from dimLibrary.cc:6: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)': mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 56 | register int i; | ^ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ readPDBQT.cc: In function 'Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)': readPDBQT.cc:138:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 138 | register int i = 0; | ^ readPDBQT.cc:139:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 139 | register int j = 0; | ^ cluster_analysis.cc: In function 'int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)': cluster_analysis.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | register int compare = 0, | ^~~~~~~ cluster_analysis.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 62 | i = 0; | ^ readPDBQT.cc:133:25: warning: variable 'B_has_conect_records' set but not used [-Wunused-but-set-variable] 133 | Boole B_has_conect_records = FALSE; | ^~~~~~~~~~~~~~~~~~~~ In file included from input_state.h:30, from input_state.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc dimLibrary.cc: In function 'void copyDimension(State*, const Position&)': dimLibrary.cc:17:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc:17:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 17 | register int i, j; | ^ dimLibrary.cc: In function 'void copyState2Dimension(Position*, const State&)': dimLibrary.cc:34:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 34 | register int i, j; | ^ dimLibrary.cc:34:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 34 | register int i, j; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from cnv_state_to_coords.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from stateLibrary.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ stateLibrary.cc: In function 'void initialiseState(State*)': stateLibrary.cc:40:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 40 | register int i; | ^ stateLibrary.cc: In function 'void copyState(State*, const State&)': stateLibrary.cc:61:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | register int i; | ^ stateLibrary.cc: In function 'void printState(FILE*, State, int)': stateLibrary.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int i; | ^ In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ stateLibrary.cc: In function 'int checkState(FILE*, const State*)': stateLibrary.cc:199:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 199 | register int i; | ^ stateLibrary.cc: In function 'Molecule copyStateToMolecule(const State*, Molecule*)': stateLibrary.cc:251:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 251 | register int i; | ^ In file included from changeState.cc:34: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ changeState.cc: In function 'State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)': changeState.cc:46:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register int i; | ^ readfield.cc: In function 'void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)': readfield.cc:49:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 49 | register int i = 0; | ^ input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)': input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from analysis.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from getInitialState.h:31, from getInitialState.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ analysis.cc: In function 'void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)': analysis.cc:138:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 138 | register int i = 0; | ^ analysis.cc:139:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 139 | register int j = 0; | ^ analysis.cc:140:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 140 | register int k = 0; | ^ analysis.cc:141:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 141 | register int t = 0; | ^ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ getInitialState.cc: In function 'void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)': getInitialState.cc:111:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 111 | register int i = 0; | ^ ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)': ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ In file included from eval.h:38, from support.h:237, from ls.h:40, from call_ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)': minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ In file included from initautodock.h:31, from initautodock.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ initautodock.cc: In function 'void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)': initautodock.cc:76:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 76 | register int xyz = 0; | ^~~ initautodock.cc:77:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i = 0; | ^ call_ls.cc: In function 'Representation** cnv_state_to_rep(const State&)': call_ls.cc:50:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 50 | register int i; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from gs.cc:42: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)': mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int k = 0; | ^ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from call_glss.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc bestpdb.cc: In function 'void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)': bestpdb.cc:58:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 58 | register int i=0, | ^ bestpdb.cc:59:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | j=0, | ^ bestpdb.cc:60:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 60 | k=0, | ^ bestpdb.cc:61:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 61 | confnum=0; | ^~~~~~~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc In file included from clmode.h:40, from clmode.cc:38: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ clmode.cc: In function 'void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)': clmode.cc:62:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 62 | register int xyz = 0; | ^~~ clmode.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int i = 0; | ^ clmode.cc:90:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int j = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc readfield.cc:83:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 83 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:108:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 108 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:116:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ readfield.cc:123:17: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 123 | (void) fgets(inputline, LINE_LEN, fldFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc gs.cc: In function 'double worst_in_window(const double*, int, int, FILE*)': gs.cc:73:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 73 | register int i; | ^ gs.cc: In function 'double avg_in_window(const double*, int, FILE*)': gs.cc:107:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 107 | register int i; | ^ gs.cc: In member function 'double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)': gs.cc:130:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 130 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)': gs.cc:287:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc:287:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 287 | register int i, j; | ^ gs.cc: In member function 'void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)': gs.cc:396:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 396 | register unsigned int i; | ^ call_glss.cc: In function 'State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)': call_glss.cc:259:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 259 | register unsigned int i; | ^ call_glss.cc:260:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 260 | register int j; | ^ gs.cc: In member function 'void Genetic_Algorithm::crossover(Population&, int, FILE*)': gs.cc:596:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 596 | register unsigned int i; | ^ In file included from constants.h:28, from structs.h:30, from rep.h:45, from support.h:236: autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro 'assertQuatOK' 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro 'assertQuatOK' 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)': gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)': gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)': gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)': gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)': gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)': investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc In file included from nonbonds.cc:35: mdist.h: In function 'void mdist()': mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)': nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-success.o `test -f 'success.cc' || echo './'`success.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-support.o `test -f 'support.cc' || echo './'`support.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-swap.o `test -f 'swap.cc' || echo './'`swap.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc strindex.cc: In function 'int strindex(const char*, const char*)': strindex.cc:54:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^ strindex.cc:54:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ strindex.cc:54:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc In file included from eval.h:38, from support.h:237, from gs.h:36, from hybrids.h:40, from main.cc:98: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)': mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 44 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc main.cc: In function 'int main(int, const char**)': main.cc:480:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 480 | register int i = 0; | ^ main.cc:481:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 481 | register int j = 0; | ^ main.cc:482:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 482 | register int k = 0; | ^ main.cc:484:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 484 | register int xyz = 0; | ^~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-usage.o `test -f 'usage.cc' || echo './'`usage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc threadlog.cc:72: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 72 | #pragma omp critical | g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)': prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | register int i = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-main.o `test -f 'main.cc' || echo './'`main.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-alea.o `test -f 'alea.cc' || echo './'`alea.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)': prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | j=0; | ^ scauchy.cc: In function 'Real scauchy2()': scauchy.cc:81:15: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^ scauchy.cc:81:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ scauchy.cc:81:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 81 | register Real x, y, r1, r2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-banner.o `test -f 'banner.cc' || echo './'`banner.cc prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)': prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 64 | register int i = 0; | ^ In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)': qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)': qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ qmultiply.cc: In function 'Quat inverse(const Quat&)': qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from qtransform.h:35, from qtransform.cc:32: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc rep.cc: In constructor 'IntVector::IntVector(int)': rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor 'IntVector::IntVector(int, int, int)': rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)': rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:641:10: note: in expansion of macro 'assertQuatOK' 641 | assertQuatOK( q_father ); | ^~~~~~~~~~~~ autocomm.h:166:60: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); } | ^~~~~~~~~ gs.cc:652:10: note: in expansion of macro 'assertQuatOK' 652 | assertQuatOK( q_mother ); | ^~~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)': gs.cc:877:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 877 | register unsigned int i; | ^ gs.cc: In member function 'void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)': gs.cc:983:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^ gs.cc:983:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 983 | register unsigned int i=0, start_index = 0; | ^~~~~~~~~~~ gs.cc: In member function 'void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)': gs.cc:1262:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1262:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1262 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc gs.cc: In member function 'void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)': gs.cc:1327:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^ gs.cc:1327:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1327 | register unsigned int i = 0, start_index = 0; | ^~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc gs.cc: In member function 'virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)': gs.cc:1420:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 1420 | register unsigned int i; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc mkTorTree.cc: In function 'void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)': mkTorTree.cc:88:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register int i = 0; | ^ mkTorTree.cc:89:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register int j = 0; | ^ mkTorTree.cc:90:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 90 | register int k = 0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc mkRandomState.cc: In function 'State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)': mkRandomState.cc:44:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 44 | register int i; | ^ In file included from eval.h:38, from support.h:237, from mapping.cc:37: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ input_state.cc: In function 'int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)': input_state.cc:70:25: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 70 | (void) fgets(myline, LINELEN, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from nonbonds.cc:35: mdist.h: In function 'void mdist()': mdist.h:45:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:45:24: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ mdist.h:32:25: warning: operation on 'mindist[0][0]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[0][0]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:89:5: note: in expansion of macro 'set_minmax' 89 | set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[1][1]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[1][1]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:96:5: note: in expansion of macro 'set_minmax' 96 | set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[2][2]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[2][2]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:102:5: note: in expansion of macro 'set_minmax' 102 | set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[3][3]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[3][3]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:107:5: note: in expansion of macro 'set_minmax' 107 | set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming. | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[4][4]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[4][4]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:111:5: note: in expansion of macro 'set_minmax' 111 | set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[5][5]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[5][5]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:114:5: note: in expansion of macro 'set_minmax' 114 | set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513 | ^~~~~~~~~~ mdist.h:32:25: warning: operation on 'mindist[6][6]' may be undefined [-Wsequence-point] 32 | mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\ | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ mdist.h:33:25: warning: operation on 'maxdist[6][6]' may be undefined [-Wsequence-point] 33 | maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mdist.h:116:5: note: in expansion of macro 'set_minmax' 116 | set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515 | ^~~~~~~~~~ In file included from eval.h:38, from support.h:237, from minmeanmax.cc:39: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from mkNewState.h:31, from mkNewState.cc:33: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ nonbonds.cc: In function 'void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)': nonbonds.cc:250:13: warning: '?:' using integer constants in boolean context [-Wint-in-bool-context] 248 | for (int j=0; j< | ~~ 249 | B_print_all_bonds | ~~~~~~~~~~~~~~~~~ 250 | ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | : nbonds[i]; // loop over this atom's "j" bonds | ~~~~~~~~~~~ mkNewState.cc: In function 'void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)': mkNewState.cc:56:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 56 | register int i; | ^ In file included from eval.h:38, from support.h:237, from ls.h:40, from ls.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ minmeanmax.cc: In function 'void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)': minmeanmax.cc:51:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:51:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int i=0, g=0, b=0; | ^ minmeanmax.cc:56:76: warning: variable 'best' set but not used [-Wunused-but-set-variable] 56 | double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ]; | ^~~~ mkTorTree.cc: At global scope: mkTorTree.cc:456:5: warning: 'int check_atomnumber(int, const int*, int, int, FILE*)' defined but not used [-Wunused-function] 456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord, | ^~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc ls.cc: In function 'Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)': ls.cc:46:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^ ls.cc:46:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 46 | register unsigned int i, index = 0; | ^~~~~ ls.cc: In member function 'virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:88:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^ ls.cc:88:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~~ ls.cc:88:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 88 | register unsigned int i, j, num_successes = 0, num_failures = 0; | ^~~~~~~~~~~~ ls.cc:89:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 89 | register Real temp_rho = rho; | ^~~~~~~~ ls.cc:92:9: warning: unused variable 'thisQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:19: warning: unused variable 'prevQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~ ls.cc:92:29: warning: unused variable 'startQuat' [-Wunused-variable] 92 | Quat thisQuat, prevQuat, startQuat; | ^~~~~~~~~ ls.cc: In member function 'virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)': ls.cc:248:26: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^ ls.cc:248:32: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~ ls.cc:248:51: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~ ls.cc:248:70: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 248 | register unsigned int i, j, num_successes = 0, num_failures = 0, all_rho_stepsizes_too_small = 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from investigate.h:33, from investigate.cc:40: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ investigate.cc: In function 'void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)': investigate.cc:103:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 103 | register int Test = -1; | ^~~~ investigate.cc:106:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 106 | register int i = 0; | ^ investigate.cc:120:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 120 | register int NumOutside = 0; | ^~~~~~~~~~ investigate.cc:121:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 121 | register int LocalTest = 0; | ^~~~~~~~~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-swap.o `test -f 'swap.cc' || echo './'`swap.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc strindex.cc: In function 'int strindex(const char*, const char*)': strindex.cc:54:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^ strindex.cc:54:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ strindex.cc:54:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | register int i,c1,c2; | ^~ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc prClusterHist.cc: In function 'void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)': prClusterHist.cc:51:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 51 | register int Rank=0, | ^~~~ prClusterHist.cc:52:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 52 | j=0; | ^ g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-usage.o `test -f 'usage.cc' || echo './'`usage.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I. -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -Wno-write-strings -fopenmp -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autodock4_omp-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc g++ -O3 -Wall -Wno-write-strings -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto -o autodock4 autodock4-main.o autodock4-alea.o autodock4-analysis.o autodock4-atom_parameter_manager.o autodock4-banner.o autodock4-bestpdb.o autodock4-calculateEnergies.o autodock4-call_glss.o autodock4-call_ls.o autodock4-center_ligand.o autodock4-changeState.o autodock4-check_header_float.o autodock4-check_header_int.o autodock4-check_header_line.o autodock4-cluster_analysis.o autodock4-clmode.o autodock4-cnv_state_to_coords.o autodock4-com.o autodock4-conformation_sampler.o autodock4-dimLibrary.o autodock4-distdepdiel.o autodock4-stateLibrary.o autodock4-readfield.o autodock4-readmap.o autodock4-readPDBQT.o autodock4-read_parameter_library.o autodock4-eval.o autodock4-gencau.o autodock4-getrms.o autodock4-get_atom_type.o autodock4-getInitialState.o autodock4-getpdbcrds.o autodock4-gs.o autodock4-initautodock.o autodock4-input_state.o autodock4-investigate.o autodock4-linpack.o autodock4-ls.o autodock4-mapping.o autodock4-mingw_getrusage.o autodock4-minmeanmax.o autodock4-mkNewState.o autodock4-mkTorTree.o autodock4-mkRandomState.o autodock4-nonbonds.o autodock4-openfile.o autodock4-output_state.o autodock4-parse_dpf_line.o autodock4-parse_param_line.o autodock4-parse_PDBQT_line.o autodock4-parse_trj_line.o autodock4-parsetypes.o autodock4-print_2x.o autodock4-print_atomic_energies.o autodock4-print_avsfld.o autodock4-writePDBQT.o autodock4-print_rem.o autodock4-printdate.o autodock4-printEnergies.o autodock4-printhms.o autodock4-prClusterHist.o autodock4-prInitialState.o autodock4-prTorConList.o autodock4-pso.o autodock4-qmultiply.o autodock4-qtransform.o autodock4-quicksort.o autodock4-ranlib.o autodock4-rep.o autodock4-scauchy.o autodock4-setflags.o autodock4-simanneal.o autodock4-sort_enrg.o autodock4-stack.o autodock4-stop.o autodock4-strindex.o autodock4-success.o autodock4-support.o autodock4-swap.o autodock4-threadlog.o autodock4-timesys.o autodock4-timesyshms.o autodock4-torNorVec.o autodock4-torsion.o autodock4-trilinterp.o autodock4-usage.o autodock4-weedbonds.o autodock4-warn_bad_file.o autodock4-coliny.o autodock4-eintcal.o autodock4-eintcalPrint.o autodock4-intnbtable.o autodock4-nbe.o -lm prTorConList.cc: In function 'void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)': prTorConList.cc:64:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 64 | register int i = 0; | ^ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from writePDBQT.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ In file included from qmultiply.cc:35: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc:42:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 42 | register const Quat *const ql, //left | ^~ qmultiply.cc:43:44: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 43 | register const Quat *const qr ) //right | ^~ qmultiply.cc: In function 'void qmultiply(Quat*, const Quat*, const Quat*)': qmultiply.cc:66:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc:66:27: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 66 | register double x,y,z,w; | ^ qmultiply.cc: In function 'AxisAngle QuatToAxisAngle(const Quat&)': qmultiply.cc:224:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 224 | register double angle = 2. * acos( input.w ); | ^~~~~ In file included from qtransform.h:35, from cnv_state_to_coords.h:32, from writePDBQT.h:34, from prInitialState.cc:36: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.cc: In function 'Quat inverse(const Quat&)': qmultiply.cc:356:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~~ qmultiply.cc:356:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 356 | register Quat conj, inv; | ^~~ qmultiply.cc:357:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 357 | register double inv_squared_magnitude; | ^~~~~~~~~~~~~~~~~~~~~ prInitialState.cc: In function 'void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)': prInitialState.cc:59:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 59 | register int i = 0; | ^ In file included from eval.h:38, from support.h:237, from gs.h:36, from pso.h:4, from pso.cc:1: qmultiply.h:53:59: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:53:90: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ qmultiply.h:54:94: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr ); | ^~ eval.h: In member function 'void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)': eval.h:195:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 195 | register int i; | ^ torNorVec.cc: In function 'void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)': torNorVec.cc:47:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 47 | register int xyz = 0; | ^~~ torNorVec.cc:48:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 48 | register int j = 0; | ^ torNorVec.cc: In function 'void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)': torNorVec.cc:104:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i=0, j=0; | ^ torNorVec.cc:104:23: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 104 | register int i=0, j=0; | ^ rep.cc: In constructor 'IntVector::IntVector(int)': rep.cc:77:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 77 | register int i; | ^ rep.cc: In constructor 'IntVector::IntVector(int, int, int)': rep.cc:95:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 95 | register int i; | ^ rep.cc: In copy constructor 'IntVector::IntVector(const IntVector&)': rep.cc:129:31: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 129 | for (register unsigned int i=0; i default_parameters.h sh ./copyfilesfromAD make all-am make[3]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I. -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp calc_vina_potential.cpp: In function 'int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)': calc_vina_potential.cpp:110:9: warning: variable 'hydrogen' set but not used [-Wunused-but-set-variable] 110 | int hydrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:113:9: warning: variable 'oxygen' set but not used [-Wunused-but-set-variable] 113 | int oxygen=-1; | ^~~~~~ calc_vina_potential.cpp:114:9: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable] 114 | int nitrogen=-1; | ^~~~~~~~ calc_vina_potential.cpp:115:9: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable] 115 | int fluorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:116:9: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable] 116 | int chlorine=-1; | ^~~~~~~~ calc_vina_potential.cpp:117:9: warning: variable 'bromine' set but not used [-Wunused-but-set-variable] 117 | int bromine=-1; | ^~~~~~~ calc_vina_potential.cpp:118:9: warning: variable 'iodine' set but not used [-Wunused-but-set-variable] 118 | int iodine=-1; | ^~~~~~ read_parameter_library.cpp: In function 'void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)': read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 207 | register int counter = 0; | ^~~~~~~ main.cpp: In function 'int main(int, char**)': main.cpp:427:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~ main.cpp:427:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:36: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^ main.cpp:427:43: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~ main.cpp:427:55: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth; | ^~~~~~~~ main.cpp:428:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:22: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:38: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~~~~~~~ main.cpp:428:54: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~~ main.cpp:428:63: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:71: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:428:79: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0; | ^~ main.cpp:429:14: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register int closestH = 0; | ^~~~~~~~ main.cpp:214:5: warning: variable 'parameter_library_found' set but not used [-Wunused-but-set-variable] 214 | int parameter_library_found = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ main.cpp:263:8: warning: variable 'maptypeptr' set but not used [-Wunused-but-set-variable] 263 | char * maptypeptr; /*ptr for current map->type*/ | ^~~~~~~~~~ main.cpp:301:44: warning: variable 'nitrogen' set but not used [-Wunused-but-set-variable] 301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen; | ^~~~~~~~ main.cpp:302:21: warning: variable 'nonHB_nitrogen' set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~~ main.cpp:302:46: warning: variable 'nonHB_sulphur' set but not used [-Wunused-but-set-variable] 302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur; | ^~~~~~~~~~~~~ main.cpp:305:5: warning: variable 'chlorine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:15: warning: variable 'bromine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~ main.cpp:305:24: warning: variable 'fluorine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~~~ main.cpp:305:34: warning: variable 'iodine' set but not used [-Wunused-but-set-variable] 305 | int chlorine, bromine, fluorine, iodine; | ^~~~~~ main.cpp:307:5: warning: variable 'map_hydrogen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:307:19: warning: variable 'map_carbon' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:31: warning: variable 'map_arom_carbon' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~~~~ main.cpp:307:48: warning: variable 'map_oxygen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~ main.cpp:307:60: warning: variable 'map_nitrogen' set but not used [-Wunused-but-set-variable] 307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen; | ^~~~~~~~~~~~ main.cpp:308:5: warning: variable 'map_nonHB_hydrogen' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:25: warning: variable 'map_nonHB_nitrogen' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~~ main.cpp:308:45: warning: variable 'map_sulphur' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~ main.cpp:308:58: warning: variable 'map_nonHB_sulphur' set but not used [-Wunused-but-set-variable] 308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur; | ^~~~~~~~~~~~~~~~~ main.cpp:309:5: warning: variable 'map_chlorine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:19: warning: variable 'map_bromine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~ main.cpp:309:32: warning: variable 'map_fluorine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~~~ main.cpp:309:46: warning: variable 'map_iodine' set but not used [-Wunused-but-set-variable] 309 | int map_chlorine, map_bromine, map_fluorine, map_iodine; | ^~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/autodocksuite-4.2.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -flto -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o -lm make[3]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[2]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_auto_test --sourcedirectory=autodock cd autodock && make -j42 test "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' Running the Python3 test_autodock4.py unit-tests on autodock4 outputdir=`pwd` ;\ umask 0 ;\ test -d $outputdir/Testruns && chmod -fR a+w $outputdir/Testruns;\ test -d $outputdir/Testruns || mkdir $outputdir/Testruns ;\ cp ./AD4.1_bound.dat $outputdir/Testruns;\ cp ./AD4_parameters.dat $outputdir/Testruns;\ cp ./Tests/*.py $outputdir/Testruns;\ cp ./Tests/*.dpf $outputdir/Testruns;\ cp ./Tests/*.pdbqt $outputdir/Testruns;\ cp ./Tests/*.map* $outputdir/Testruns;\ chmod -fR a+w $outputdir/Testruns; cd Testruns; rm -f test_*.dlg ; \ python3 ./test_autodock4.py -d . -e ../autodock4 -o . ; ............................................./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback in 1pgp_no_extension in 1pgp_wrong_extension in 1pgp_two_extensions Running ../autodock4 using DPF "./1pgp_no_extension", saving results in "./test_1pgp_no_extension.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp.fpd", saving results in "./test_1pgp.fpd.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp.dpf.dpf", saving results in "./test_1pgp.dpf.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_timepid.dpf", saving results in "./test_1pgp_timepid.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_seed01.dpf", saving results in "./test_1pgp_seed01.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_seed37.dpf", saving results in "./test_1pgp_seed37.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_seedinttime.dpf", saving results in "./test_1pgp_seedinttime.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_epdb_flexres_intelec.dpf", saving results in "./test_1pgp_epdb_flexres_intelec.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_epdb_flexres_nointelec.dpf", saving results in "./test_1pgp_epdb_flexres_nointelec.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_epdb_etables.dpf", saving results in "./test_1pgp_epdb_etables.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_numoutlev.dpf", saving results in "./test_1pgp_numoutlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_symoutlev.dpf", saving results in "./test_1pgp_symoutlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_no_outlev.dpf", saving results in "./test_1pgp_no_outlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_illegal_outlev.dpf", saving results in "./test_1pgp_illegal_outlev.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_illegal_symoutlev.dpf", saving results in "./test_1pgp_illegal_symoutlev.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_mixed_basic_analysis.dpf", saving results in "./test_1pgp_mixed_basic_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_mixed_adt_analysis.dpf", saving results in "./test_1pgp_mixed_adt_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ligand_types_map_mismatch.dpf", saving results in "./test_1pgp_ligand_types_map_mismatch.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_map_truncated.dpf", saving results in "./test_1pgp_map_truncated.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_illegal_keyword.dpf", saving results in "./test_1pgp_illegal_keyword.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_no_elecmap.dpf", saving results in "./test_1pgp_no_elecmap.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_no_desolvmap.dpf", saving results in "./test_1pgp_no_desolvmap.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_no_elec_desolv_maps.dpf", saving results in "./test_1pgp_no_elec_desolv_maps.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_too_many_ligand_types.dpf", saving results in "./test_1pgp_too_many_ligand_types.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_too_many_torsions.dpf", saving results in "./test_1pgp_too_many_torsions.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_just_right_number_torsions.dpf", saving results in "./test_1pgp_just_right_number_torsions.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_two_ligands.dpf", saving results in "./test_1pgp_two_ligands.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_two_mapsets.dpf", saving results in "./test_1pgp_two_mapsets.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_unbound_set_illegal.dpf", saving results in "./test_1pgp_unbound_set_illegal.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_unbound_model_illegal.dpf", saving results in "./test_1pgp_unbound_model_illegal.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_intnbpreps.dpf", saving results in "./test_1pgp_intnbpreps.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_intnbpreps_toofew.dpf", saving results in "./test_1pgp_intnbpreps_toofew.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_intnbpreps_illegal_atom.dpf", saving results in "./test_1pgp_intnbpreps_illegal_atom.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_intnbcoeffs.dpf", saving results in "./test_1pgp_intnbcoeffs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ga_select_tournament.dpf", saving results in "./test_1pgp_ga_select_tournament.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_ga_select_linear_ranking.dpf", saving results in "./test_1pgp_ga_select_linear_ranking.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_rmsmode_heavy_atoms_only_noH.dpf", saving results in "./test_1pgp_rmsmode_heavy_atoms_only_noH.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_rmsmode_all_heavy_atom_pairs_only.dpf", saving results in "./test_1pgp_rmsmode_all_heavy_atom_pairs_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_rmsmode_unique_heavy_atom_pairs_only.dpf", saving results in "./test_1pgp_rmsmode_unique_heavy_atom_pairs_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_simanneal_small.dpf", saving results in "./test_1pgp_simanneal_small.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_simanneal_small_geometric_schedule.dpf", saving results in "./test_1pgp_simanneal_small_geometric_schedule.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ligrand_ga_only.dpf", saving results in "./test_1pgp_ligrand_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ga_only.dpf", saving results in "./test_1pgp_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_outpopfil.dpf", saving results in "./test_1pgp_outpopfil.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_flexres.dpf", saving results in "./test_1pgp_flexres.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp.dpf", saving results in "./test_1pgp.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. ../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_no_parameter_file.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ..../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_gals_use_defaults.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ..../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_default.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_set0.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_set10.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_compact.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_bound.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_extended.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_compute_unbound_extended.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_value.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_ligrand_ga_only.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_ga_only.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_smooth0.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres_1_4_50.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres_1_4_100.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_1_4_50.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_1_4_100.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ...........Testing that internal energy = -3.23 kcal/mol. Running ../autodock4 using DPF "./1pgp_smaller.dpf", saving results in "./test_1pgp_smaller.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_no_parameter_file.dpf", saving results in "./test_1pgp_no_parameter_file.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. Testing that internal energy = -3.23 kcal/mol. Running ../autodock4 using DPF "./1pgp_gals_set_sw1.dpf", saving results in "./test_1pgp_gals_set_sw1.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_no_set_psw1.dpf", saving results in "./test_1pgp_no_set_psw1.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_no_set_ga.dpf", saving results in "./test_1pgp_no_set_ga.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4 using DPF "./1pgp_gals_use_defaults.dpf", saving results in "./test_1pgp_gals_use_defaults.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. Testing that internal energy = -3.23 kcal/mol. Running ../autodock4 using DPF "./1pgp_simanneal_10runs.dpf", saving results in "./test_1pgp_simanneal_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_lsonly_10runs.dpf", saving results in "./test_1pgp_lsonly_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_gals_10runs.dpf", saving results in "./test_1pgp_gals_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_unbound_default.dpf", saving results in "./test_1pgp_unbound_default.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.23 Testing that unbound energy = -3.23 kcal/mol. unbound_energy= -3.23 Running ../autodock4 using DPF "./1pgp_unbound_set0.dpf", saving results in "./test_1pgp_unbound_set0.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 0.0 Testing that unbound energy = 0.00 kcal/mol. unbound_energy= 0.0 Running ../autodock4 using DPF "./1pgp_unbound_set10.dpf", saving results in "./test_1pgp_unbound_set10.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 10.0 Testing that unbound energy = 10.00 kcal/mol. unbound_energy= 10.0 Running ../autodock4 using DPF "./1pgp_unbound_model_compact.dpf", saving results in "./test_1pgp_unbound_model_compact.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 0.0 Testing that unbound energy = 0.00 kcal/mol. unbound_energy= 0.0 Running ../autodock4 using DPF "./1pgp_unbound_model_bound.dpf", saving results in "./test_1pgp_unbound_model_bound.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.23 Testing that unbound energy = -3.23 kcal/mol. unbound_energy= -3.23 Running ../autodock4 using DPF "./1pgp_unbound_model_extended.dpf", saving results in "./test_1pgp_unbound_model_extended.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -0.75 Testing that unbound energy = -0.75 kcal/mol. unbound_energy= -0.75 Running ../autodock4 using DPF "./1pgp_unbound_compute_unbound_extended.dpf", saving results in "./test_1pgp_unbound_compute_unbound_extended.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -0.75 Testing that unbound energy = -0.75 kcal/mol. unbound_energy= -0.75 Running ../autodock4 using DPF "./1pgp_unbound_model_value.dpf", saving results in "./test_1pgp_unbound_model_value.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.12 Testing that unbound energy = -3.12 kcal/mol. unbound_energy= -3.12 Running ../autodock4 using DPF "./1pgp_ligrand_ga_only.dpf", saving results in "./test_1pgp_ligrand_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now 1.39 Testing that binding energy = 1.39 kcal/mol. binding_energy= 1.39 Running ../autodock4 using DPF "./1pgp_ga_only.dpf", saving results in "./test_1pgp_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -4.08 Testing that binding energy = -4.08 kcal/mol. binding_energy= -4.08 Running ../autodock4 using DPF "./1pgp_smooth0.dpf", saving results in "./test_1pgp_smooth0.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -5.87 Testing that binding energy = -5.87 kcal/mol. binding_energy= -5.87 Running ../autodock4 using DPF "./1pgp_flexres.dpf", saving results in "./test_1pgp_flexres.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4 using DPF "./1pgp_flexres_1_4_50.dpf", saving results in "./test_1pgp_flexres_1_4_50.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4 using DPF "./1pgp_flexres_1_4_100.dpf", saving results in "./test_1pgp_flexres_1_4_100.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4 using DPF "./1pgp_1_4_50.dpf", saving results in "./test_1pgp_1_4_50.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -4.08 Testing that binding energy = -4.08 kcal/mol. binding_energy= -4.08 Running ../autodock4 using DPF "./1pgp_1_4_100.dpf", saving results in "./test_1pgp_1_4_100.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -3.49 Testing that binding energy = -3.49 kcal/mol. binding_energy= -3.49 Running ../autodock4 using DPF "./1pgp_about_only.dpf", saving results in "./test_1pgp_about_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_multipleabouts.dpf", saving results in "./test_1pgp_multipleabouts.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_about_auto_simanneal.dpf", saving results in "./test_1pgp_about_auto_simanneal.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_about_auto_ga_only.dpf", saving results in "./test_1pgp_about_auto_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_about_auto_local_only.dpf", saving results in "./test_1pgp_about_auto_local_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_about_auto_gals.dpf", saving results in "./test_1pgp_about_auto_gals.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ga_run_maxruns.dpf", saving results in "./test_1pgp_ga_run_maxruns.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_ga_run_maxruns_analysis.dpf", saving results in "./test_1pgp_ga_run_maxruns_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_mixed_maxruns.dpf", saving results in "./test_1pgp_mixed_maxruns.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_mixed_maxruns_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. ... ---------------------------------------------------------------------- Ran 84 tests in 25.565s OK Running ../autodock4 using DPF "./1pgp_mixed_maxruns_basic_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_basic_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_mixed_maxruns_adt_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_adt_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4 using DPF "./1pgp_overmaxruns.dpf", saving results in "./test_1pgp_overmaxruns.dlg": Testing that DLG exists and AutoDock did not complete. sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> Running the Python3 test_autodock4.py unit-tests on autodock4.omp cd Testruns; rm -f test_*.dlg ; \ python3 ./test_autodock4.py -d . -e ../autodock4.omp -o . ; .............................................in 1pgp_no_extension in 1pgp_wrong_extension in 1pgp_two_extensions Running ../autodock4.omp using DPF "./1pgp_no_extension", saving results in "./test_1pgp_no_extension.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp.fpd", saving results in "./test_1pgp.fpd.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp.dpf.dpf", saving results in "./test_1pgp.dpf.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_timepid.dpf", saving results in "./test_1pgp_timepid.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_seed01.dpf", saving results in "./test_1pgp_seed01.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_seed37.dpf", saving results in "./test_1pgp_seed37.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_seedinttime.dpf", saving results in "./test_1pgp_seedinttime.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_epdb_flexres_intelec.dpf", saving results in "./test_1pgp_epdb_flexres_intelec.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_epdb_flexres_nointelec.dpf", saving results in "./test_1pgp_epdb_flexres_nointelec.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_epdb_etables.dpf", saving results in "./test_1pgp_epdb_etables.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_numoutlev.dpf", saving results in "./test_1pgp_numoutlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_symoutlev.dpf", saving results in "./test_1pgp_symoutlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_no_outlev.dpf", saving results in "./test_1pgp_no_outlev.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_illegal_outlev.dpf", saving results in "./test_1pgp_illegal_outlev.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_illegal_symoutlev.dpf", saving results in "./test_1pgp_illegal_symoutlev.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_mixed_basic_analysis.dpf", saving results in "./test_1pgp_mixed_basic_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_mixed_adt_analysis.dpf", saving results in "./test_1pgp_mixed_adt_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ligand_types_map_mismatch.dpf", saving results in "./test_1pgp_ligand_types_map_mismatch.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_map_truncated.dpf", saving results in "./test_1pgp_map_truncated.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_illegal_keyword.dpf", saving results in "./test_1pgp_illegal_keyword.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_no_elecmap.dpf", saving results in "./test_1pgp_no_elecmap.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_no_desolvmap.dpf", saving results in "./test_1pgp_no_desolvmap.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_no_elec_desolv_maps.dpf", saving results in "./test_1pgp_no_elec_desolv_maps.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_too_many_ligand_types.dpf", saving results in "./test_1pgp_too_many_ligand_types.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_too_many_torsions.dpf", saving results in "./test_1pgp_too_many_torsions.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_just_right_number_torsions.dpf", saving results in "./test_1pgp_just_right_number_torsions.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_two_ligands.dpf", saving results in "./test_1pgp_two_ligands.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_two_mapsets.dpf", saving results in "./test_1pgp_two_mapsets.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_unbound_set_illegal.dpf", saving results in "./test_1pgp_unbound_set_illegal.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_unbound_model_illegal.dpf", saving results in "./test_1pgp_unbound_model_illegal.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_intnbpreps.dpf", saving results in "./test_1pgp_intnbpreps.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_intnbpreps_toofew.dpf", saving results in "./test_1pgp_intnbpreps_toofew.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_intnbpreps_illegal_atom.dpf", saving results in "./test_1pgp_intnbpreps_illegal_atom.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_intnbcoeffs.dpf", saving results in "./test_1pgp_intnbcoeffs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ga_select_tournament.dpf", saving results in "./test_1pgp_ga_select_tournament.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_ga_select_linear_ranking.dpf", saving results in "./test_1pgp_ga_select_linear_ranking.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_rmsmode_heavy_atoms_only_noH.dpf", saving results in "./test_1pgp_rmsmode_heavy_atoms_only_noH.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_rmsmode_all_heavy_atom_pairs_only.dpf", saving results in "./test_1pgp_rmsmode_all_heavy_atom_pairs_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_rmsmode_unique_heavy_atom_pairs_only.dpf", saving results in "./test_1pgp_rmsmode_unique_heavy_atom_pairs_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_simanneal_small.dpf", saving results in "./test_1pgp_simanneal_small.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_simanneal_small_geometric_schedule.dpf", saving results in "./test_1pgp_simanneal_small_geometric_schedule.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ligrand_ga_only.dpf", saving results in "./test_1pgp_ligrand_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ga_only.dpf", saving results in "./test_1pgp_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_outpopfil.dpf", saving results in "./test_1pgp_outpopfil.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_flexres.dpf", saving results in "./test_1pgp_flexres.dlg": Testing that DLG exists and AutoDock successfully completed. /build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_no_parameter_file.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ..../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_gals_use_defaults.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ..../build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_default.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_set0.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_set10.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_compact.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_bound.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_extended.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_compute_unbound_extended.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_unbound_model_value.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_ligrand_ga_only.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_ga_only.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_smooth0.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres_1_4_50.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_flexres_1_4_100.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_1_4_50.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ./build/reproducible-path/autodocksuite-4.2.6/autodock/Testruns/./test_autodock4.py:91: ResourceWarning: unclosed file <_io.TextIOWrapper name='./test_1pgp_1_4_100.dlg' mode='r' encoding='utf-8'> parser.parse( dlg ) ResourceWarning: Enable tracemalloc to get the object allocation traceback ......... Running ../autodock4.omp using DPF "./1pgp.dpf", saving results in "./test_1pgp.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. Testing that internal energy = -3.23 kcal/mol. Running ../autodock4.omp using DPF "./1pgp_smaller.dpf", saving results in "./test_1pgp_smaller.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_no_parameter_file.dpf", saving results in "./test_1pgp_no_parameter_file.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. Testing that internal energy = -3.23 kcal/mol. Running ../autodock4.omp using DPF "./1pgp_gals_set_sw1.dpf", saving results in "./test_1pgp_gals_set_sw1.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_no_set_psw1.dpf", saving results in "./test_1pgp_no_set_psw1.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_no_set_ga.dpf", saving results in "./test_1pgp_no_set_ga.dlg": Testing that DLG exists and AutoDock did not complete. Running ../autodock4.omp using DPF "./1pgp_gals_use_defaults.dpf", saving results in "./test_1pgp_gals_use_defaults.dlg": Testing that DLG exists and AutoDock successfully completed. intermol_energy is now -6.17 total_internal is now -3.23 Testing that intermolecular energy = -6.17 kcal/mol. Testing that internal energy = -3.23 kcal/mol. Running ../autodock4.omp using DPF "./1pgp_simanneal_10runs.dpf", saving results in "./test_1pgp_simanneal_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_lsonly_10runs.dpf", saving results in "./test_1pgp_lsonly_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_gals_10runs.dpf", saving results in "./test_1pgp_gals_10runs.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_unbound_default.dpf", saving results in "./test_1pgp_unbound_default.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.23 Testing that unbound energy = -3.23 kcal/mol. unbound_energy= -3.23 Running ../autodock4.omp using DPF "./1pgp_unbound_set0.dpf", saving results in "./test_1pgp_unbound_set0.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 0.0 Testing that unbound energy = 0.00 kcal/mol. unbound_energy= 0.0 Running ../autodock4.omp using DPF "./1pgp_unbound_set10.dpf", saving results in "./test_1pgp_unbound_set10.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 10.0 Testing that unbound energy = 10.00 kcal/mol. unbound_energy= 10.0 Running ../autodock4.omp using DPF "./1pgp_unbound_model_compact.dpf", saving results in "./test_1pgp_unbound_model_compact.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now 0.0 Testing that unbound energy = 0.00 kcal/mol. unbound_energy= 0.0 Running ../autodock4.omp using DPF "./1pgp_unbound_model_bound.dpf", saving results in "./test_1pgp_unbound_model_bound.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.23 Testing that unbound energy = -3.23 kcal/mol. unbound_energy= -3.23 Running ../autodock4.omp using DPF "./1pgp_unbound_model_extended.dpf", saving results in "./test_1pgp_unbound_model_extended.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -0.75 Testing that unbound energy = -0.75 kcal/mol. unbound_energy= -0.75 Running ../autodock4.omp using DPF "./1pgp_unbound_compute_unbound_extended.dpf", saving results in "./test_1pgp_unbound_compute_unbound_extended.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -0.75 Testing that unbound energy = -0.75 kcal/mol. unbound_energy= -0.75 Running ../autodock4.omp using DPF "./1pgp_unbound_model_value.dpf", saving results in "./test_1pgp_unbound_model_value.dlg": Testing that DLG exists and AutoDock successfully completed. unbound_energy is now -3.12 Testing that unbound energy = -3.12 kcal/mol. unbound_energy= -3.12 Running ../autodock4.omp using DPF "./1pgp_ligrand_ga_only.dpf", saving results in "./test_1pgp_ligrand_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now 1.39 Testing that binding energy = 1.39 kcal/mol. binding_energy= 1.39 Running ../autodock4.omp using DPF "./1pgp_ga_only.dpf", saving results in "./test_1pgp_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -4.08 Testing that binding energy = -4.08 kcal/mol. binding_energy= -4.08 Running ../autodock4.omp using DPF "./1pgp_smooth0.dpf", saving results in "./test_1pgp_smooth0.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -5.87 Testing that binding energy = -5.87 kcal/mol. binding_energy= -5.87 Running ../autodock4.omp using DPF "./1pgp_flexres.dpf", saving results in "./test_1pgp_flexres.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4.omp using DPF "./1pgp_flexres_1_4_50.dpf", saving results in "./test_1pgp_flexres_1_4_50.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4.omp using DPF "./1pgp_flexres_1_4_100.dpf", saving results in "./test_1pgp_flexres_1_4_100.dlg": Testing that DLG exists and AutoDock successfully completed. not version 4.0! RETURNING!! binding_energy is now -4.33 Testing that binding energy = -4.33 kcal/mol. binding_energy= -4.33 Running ../autodock4.omp using DPF "./1pgp_1_4_50.dpf", saving results in "./test_1pgp_1_4_50.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -4.08 Testing that binding energy = -4.08 kcal/mol. binding_energy= -4.08 Running ../autodock4.omp using DPF "./1pgp_1_4_100.dpf", saving results in "./test_1pgp_1_4_100.dlg": Testing that DLG exists and AutoDock successfully completed. binding_energy is now -3.49 Testing that binding energy = -3.49 kcal/mol. binding_energy= -3.49 Running ../autodock4.omp using DPF "./1pgp_about_only.dpf", saving results in "./test_1pgp_about_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_multipleabouts.dpf", saving results in "./test_1pgp_multipleabouts.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_about_auto_simanneal.dpf", saving results in "./test_1pgp_about_auto_simanneal.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_about_auto_ga_only.dpf", saving results in "./test_1pgp_about_auto_ga_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_about_auto_local_only.dpf", saving results in "./test_1pgp_about_auto_local_only.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_about_auto_gals.dpf", saving results in "./test_1pgp_about_auto_gals.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ga_run_maxruns.dpf", saving results in "./test_1pgp_ga_run_maxruns.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_ga_run_maxruns_analysis.dpf", saving results in "./test_1pgp_ga_run_maxruns_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. ..... ---------------------------------------------------------------------- Ran 84 tests in 26.177s OK Running ../autodock4.omp using DPF "./1pgp_mixed_maxruns.dpf", saving results in "./test_1pgp_mixed_maxruns.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_mixed_maxruns_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_mixed_maxruns_basic_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_basic_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_mixed_maxruns_adt_analysis.dpf", saving results in "./test_1pgp_mixed_maxruns_adt_analysis.dlg": Testing that DLG exists and AutoDock successfully completed. Running ../autodock4.omp using DPF "./1pgp_overmaxruns.dpf", saving results in "./test_1pgp_overmaxruns.dlg": Testing that DLG exists and AutoDock did not complete. sys:1: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='utf-8'> make[2]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' dh_auto_test --sourcedirectory=autogrid cd autogrid && make -j42 test "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' Running the Python3 test_autogrid4.py unit-tests on autogrid4 outputdir=`pwd` ;\ umask 0 ;\ test -d $outputdir/Testruns && chmod -fR a+w $outputdir/Testruns;\ test -d $outputdir/Testruns || mkdir $outputdir/Testruns ;\ cp ./Tests/AD4.1_bound.dat $outputdir/Testruns;\ cp ./Tests/*.py $outputdir/Testruns;\ cp ./Tests/*.gpf $outputdir/Testruns;\ cp ./Tests/*.pdbqt $outputdir/Testruns;\ cp ./Tests/*.map* $outputdir/Testruns;\ chmod -fR a+w $outputdir/Testruns;\ cd $outputdir/Testruns;\ python3 ./test_autogrid4.py -d . -e ../autogrid4 -o . ................................ ../autogrid4: ERROR: Not enough map keywords found. . ../autogrid4: ERROR: No electrostatic map file defined. . ../autogrid4: ERROR: No desolvation map file defined. .... ../autogrid4: ERROR: syntax error, not 6 values in NBP_R_EPS line .. ---------------------------------------------------------------------- Ran 40 tests in 0.218s OK Running ../autogrid4 using GPF "./hsg1_sm.gpf", saving results in "./hsg1_sm.glg": Running ../autogrid4 using GPF "./hsg1_sm_no_parameter_file.gpf", saving results in "./hsg1_sm.glg": Running ../autogrid4 using GPF "./hsg1_no_receptor_types.gpf", saving results in "./hsg1_sm.glg": Running ../autogrid4 using GPF "./hsg1_no_receptor_types.gpf", saving results in "./hsg1_sm.glg": Running ../autogrid4 using GPF "./x1hpv_CASE1.gpf", saving results in "./test_x1hpv_CASE1.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid did not complete. Running ../autogrid4 using GPF "./x1hpv_CASE2.gpf", saving results in "./test_x1hpv_CASE2.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid did not complete. Running ../autogrid4 using GPF "./x1hpv_CASE3.gpf", saving results in "./test_x1hpv_CASE3.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid did not complete. Running ../autogrid4 using GPF "./x1hpv_CASE0.gpf", saving results in "./test_x1hpv_CASE0.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid successfully completed. Running ../autogrid4 using GPF "./hsg1_sm_nbpreps.gpf", saving results in "./test_hsg1_sm_nbpreps.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid successfully completed. Running ../autogrid4 using GPF "./hsg1_sm_nbpreps_illegal_atom.gpf", saving results in "./test_hsg1_sm_nbpreps_illegal_atom.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid successfully completed. Running ../autogrid4 using GPF "./hsg1_sm_nbpreps_toofew.gpf", saving results in "./test_hsg1_sm_nbpreps_toofew.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid did not complete. Running ../autogrid4 using GPF "./hsg1_sm_nbpcoeffs.gpf", saving results in "./test_hsg1_sm_nbpcoeffs.glg": after call to run_AutoGrid Testing that GLG exists and AutoGrid successfully completed. make[2]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_auto_install --sourcedirectory=autodock cd autodock && make -j42 install DESTDIR=/build/reproducible-path/autodocksuite-4.2.6/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' make install-am make[3]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' make[4]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/autodocksuite-4.2.6/debian/tmp/usr/bin' /usr/bin/install -c autodock4 autodock4.omp '/build/reproducible-path/autodocksuite-4.2.6/debian/tmp/usr/bin' make[4]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' make[3]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' make[2]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autodock' dh_auto_install --sourcedirectory=autogrid cd autogrid && make -j42 install DESTDIR=/build/reproducible-path/autodocksuite-4.2.6/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make install-am make[3]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[4]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/autodocksuite-4.2.6/debian/tmp/usr/bin' /usr/bin/install -c autogrid4 '/build/reproducible-path/autodocksuite-4.2.6/debian/tmp/usr/bin' make[4]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[3]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[2]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6/autogrid' make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_install -i rm -rf /build/reproducible-path/autodocksuite-4.2.6/debian/autodock-test/usr/share/autodock/Tests/AutoDockTools rm -rf /build/reproducible-path/autodocksuite-4.2.6/debian/autogrid-test/usr/share/autogrid/Tests/CVS/ rm -rf /build/reproducible-path/autodocksuite-4.2.6/debian/autodock-test/usr/share/autodock/Tests/CVS/ make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' dh_install -Nautodock-test -Nautogrid-test -Nautodock-getdata dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_installchangelogs autodock/RELEASENOTES make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' dh_fixperms chmod 644 /build/reproducible-path/autodocksuite-4.2.6/debian/autodock-test/usr/share/autodock/Tests/* chmod 644 /build/reproducible-path/autodocksuite-4.2.6/debian/autogrid-test/usr/share/autogrid/Tests/* make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' dh_fixperms -Nautodock-test -Nautogrid-test -Nautodock-getdata debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/autodocksuite-4.2.6' find debian -name autodock4.omp -delete dh_missing make[1]: Leaving directory '/build/reproducible-path/autodocksuite-4.2.6' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'autodock' in '../autodock_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autodock-dbgsym' in '../autodock-dbgsym_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autogrid' in '../autogrid_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autogrid-dbgsym' in '../autogrid-dbgsym_4.2.6-9_amd64.deb'. dpkg-deb: building package 'autodock-test' in '../autodock-test_4.2.6-9_all.deb'. dpkg-deb: building package 'autodock-getdata' in '../autodock-getdata_4.2.6-9_all.deb'. dpkg-deb: building package 'autogrid-test' in '../autogrid-test_4.2.6-9_all.deb'. dpkg-genbuildinfo --build=binary -O../autodocksuite_4.2.6-9_amd64.buildinfo dpkg-genchanges --build=binary -O../autodocksuite_4.2.6-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/333012/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/333012/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/333012 and its subdirectories I: Current time: Thu Jun 12 14:11:39 +14 2025 I: pbuilder-time-stamp: 1749687099